Rmu_sc0002684.1_g000001

3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002684.1
OG0031222
Physical Location & Seq
Reverse (-)
2 .. 1118
1117 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002684.1_g000001.1.cds

Sequence Viewer

Length: 559 bp
atgaaagccgcggttgtagaagccgtcgttgacagggttgaagatggtgataaggagaagaagaagcggcgcccccgcaatcggcgacctaagcaaaacccctccacatcagtatcgtgtagttcagttaatgagttgcatggtgaagcgtcacctgagtgcttaggaaatggaacaatggcaaatcatgtaaccacatccttgaagcaacaccacttggacatgaatcctccatatgagcagggattgactaaagcatctaacttggctttcagttctttgccaacaatgcgcattgttgaatcccttgatgtgcaaagtcccgaaaatcaacgtttgctcccatataatttgggtggaaagatgtctgcaaaatcttgttctgaaccagctgcctgtggagggtcacctggaatccttacaaacaagggttcccctcctcagcattttgagggctattctcaaagaaagtattttcctccacactggtccatggaggatgttaatgacgctctagagaaaggtgatgcttttaaagctctgtttcgcgtcaacgcac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000070 GO:0000175 GO:0000178 GO:0000278 GO:0000280 GO:0000287 GO:0000291 GO:0000819 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0008285 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0019827 GO:0022402 GO:0022613 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035770 GO:0036464 GO:0042127 GO:0042254 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043632 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0046872 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051276 GO:0051304 GO:0051306 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098727 GO:0098813 GO:0140014 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903047 GO:1905354 GO:1990074 GO:1990904
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RNB

Protein Analysis

186

Amino Acids

20.39

Weight (kDa)

8.66

Isoelectric Point (pI)

60.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031222)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co7965048.1_g000001 Rmu_sc0002684.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 293
AccB1I GGYRCC 1 cut(s) 69
AccII CGCG 2 cut(s) 11, 549
AciI CCGC 4 cut(s) 9, 11, 67, 76
AclI AACGTT 1 cut(s) 334
AcyI GRCGYC 1 cut(s) 70
AfiI CCNNNNNNNGG 2 cut(s) 81, 402
AgsI TTSAA 3 cut(s) 41, 205, 302
AjnI CCWGG 1 cut(s) 409
AleI CACNNNNGTG 1 cut(s) 157
AluBI AGCT 2 cut(s) 392, 539
AluI AGCT 2 cut(s) 392, 539
ApeKI GCWGC 1 cut(s) 392
AspLEI GCGC 2 cut(s) 72, 294
AspS9I GGNCC 1 cut(s) 489
AsuHPI GGTGA 5 cut(s) 59, 144, 155, 399, 536
AvaII GGWCC 1 cut(s) 489
BaeI ACNNNNGTAYC 2 cut(s) 96, 129
BanI GGYRCC 1 cut(s) 69
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 1 cut(s) 379
BccI CCATC 1 cut(s) 38
BceAI ACGGC 1 cut(s) 8
BciT130I CCWGG 1 cut(s) 411
BfaI CTAG 1 cut(s) 515
BfoI RGCGCY 1 cut(s) 73
BisI GCNGC 3 cut(s) 9, 68, 393
BlsI GCNGC 3 cut(s) 10, 69, 394
Bme1390I CCNGG 1 cut(s) 411
Bme18I GGWCC 1 cut(s) 489
BmgT120I GGNCC 1 cut(s) 489
BmiI GGNNCC 2 cut(s) 71, 433
BmrFI CCNGG 1 cut(s) 411
BmsI GCATC 2 cut(s) 266, 517
Bpu10I CCTNAGC 3 cut(s) 90, 163, 441
BsaHI GRCGYC 1 cut(s) 70
BsaJI CCNNGG 2 cut(s) 9, 492
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 402
Bse1I ACTGG 1 cut(s) 491
BseBI CCWGG 1 cut(s) 411
BseDI CCNNGG 2 cut(s) 9, 492
BseGI GGATG 2 cut(s) 197, 505
BseLI CCNNNNNNNGG 2 cut(s) 81, 402
BseMII CTCAG 2 cut(s) 147, 455
BseNI ACTGG 1 cut(s) 491
BseRI GAGGAG 1 cut(s) 429
BseXI GCAGC 1 cut(s) 379
Bsh1236I CGCG 2 cut(s) 11, 549
BshNI GGYRCC 1 cut(s) 69
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 2 cut(s) 81, 402
BsmFI GGGAC 1 cut(s) 306
Bsp19I CCATGG 1 cut(s) 492
BspACI CCGC 4 cut(s) 9, 11, 67, 76
BspCNI CTCAG 2 cut(s) 148, 454
BspFNI CGCG 2 cut(s) 11, 549
BspLI GGNNCC 2 cut(s) 71, 433
BspT107I GGYRCC 1 cut(s) 69
BsrI ACTGG 1 cut(s) 491
BssECI CCNNGG 2 cut(s) 9, 492
BssNI GRCGYC 1 cut(s) 70
BssT1I CCWWGG 1 cut(s) 492
Bst2UI CCWGG 1 cut(s) 411
BstACI GRCGYC 1 cut(s) 70
BstDEI CTNAG 4 cut(s) 90, 156, 163, 441
BstDSI CCRYGG 2 cut(s) 9, 492
BstEII GGTNACC 1 cut(s) 405
BstF5I GGATG 2 cut(s) 197, 505
BstFNI CGCG 2 cut(s) 11, 549
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 2 cut(s) 72, 294
BstMWI GCNNNNNNNGC 3 cut(s) 91, 289, 536
BstNI CCWGG 1 cut(s) 411
BstPI GGTNACC 1 cut(s) 405
BstSCI CCNGG 1 cut(s) 409
BstUI CGCG 2 cut(s) 11, 549
BstV1I GCAGC 1 cut(s) 379
BtgI CCRYGG 2 cut(s) 9, 492
BtsCI GGATG 2 cut(s) 197, 505
BtsIMutI CAGTG 1 cut(s) 484
CfoI GCGC 2 cut(s) 72, 294
Cfr13I GGNCC 1 cut(s) 489
Cfr42I CCGCGG 1 cut(s) 12
CseI GACGC 3 cut(s) 138, 518, 538
CviAII CATG 4 cut(s) 140, 188, 223, 493
CviJI RGCY 6 cut(s) 8, 23, 269, 392, 456, 539
CviKI_1 RGCY 6 cut(s) 8, 23, 269, 392, 456, 539
DdeI CTNAG 4 cut(s) 90, 156, 163, 441
DinI GGCGCC 1 cut(s) 71
DraI TTTAAA 1 cut(s) 535
Eco130I CCWWGG 1 cut(s) 492
Eco47I GGWCC 1 cut(s) 489
Eco91I GGTNACC 1 cut(s) 405
EcoO65I GGTNACC 1 cut(s) 405
EcoRII CCWGG 1 cut(s) 409
EcoT14I CCWWGG 1 cut(s) 492
EgeI GGCGCC 1 cut(s) 71
EheI GGCGCC 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 492
FaeI CATG 4 cut(s) 143, 191, 226, 496
FaiI YATR 8 cut(s) 141, 189, 224, 235, 237, 346, 348, 494
FaqI GGGAC 1 cut(s) 306
FatI CATG 4 cut(s) 139, 187, 222, 492
FauI CCCGC 1 cut(s) 83
FauNDI CATATG 1 cut(s) 235
Fnu4HI GCNGC 3 cut(s) 9, 68, 393
FokI GGATG 2 cut(s) 184, 512
Fsp4HI GCNGC 3 cut(s) 9, 68, 393
FspAI RTGCGCAY 1 cut(s) 293
FspBI CTAG 1 cut(s) 515
FspI TGCGCA 1 cut(s) 293
GlaI GCGC 2 cut(s) 71, 293
GluI GCNGC 3 cut(s) 9, 68, 393
HaeII RGCGCY 1 cut(s) 73
HgaI GACGC 3 cut(s) 138, 518, 538
HhaI GCGC 2 cut(s) 72, 294
Hin1I GRCGYC 1 cut(s) 70
Hin1II CATG 4 cut(s) 143, 191, 226, 496
Hin6I GCGC 2 cut(s) 70, 292
HinP1I GCGC 2 cut(s) 70, 292
HincII GTYRAC 2 cut(s) 31, 553
HindII GTYRAC 2 cut(s) 31, 553
HinfI GANTC 3 cut(s) 226, 302, 414
HphI GGTGA 5 cut(s) 59, 144, 155, 399, 536
Hpy166II GTNNAC 2 cut(s) 31, 553
Hpy188I TCNGA 1 cut(s) 385
Hpy188III TCNNGA 2 cut(s) 323, 515
Hpy8I GTNNAC 2 cut(s) 31, 553
Hpy99I CGWCG 1 cut(s) 29
HpyCH4IV ACGT 1 cut(s) 334
HpyCH4V TGCA 3 cut(s) 139, 316, 371
HpyF10VI GCNNNNNNNGC 3 cut(s) 91, 289, 536
HpyF3I CTNAG 4 cut(s) 90, 156, 163, 441
HpySE526I ACGT 1 cut(s) 334
Hsp92I GRCGYC 1 cut(s) 70
Hsp92II CATG 4 cut(s) 143, 191, 226, 496
HspAI GCGC 2 cut(s) 70, 292
KasI GGCGCC 1 cut(s) 69
KspI CCGCGG 1 cut(s) 12
LmnI GCTCC 1 cut(s) 345
LpnPI CCDG 8 cut(s) 19, 168, 227, 396, 402, 409, 423, 472
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 2 cut(s) 266, 517
MaeI CTAG 1 cut(s) 515
MaeII ACGT 1 cut(s) 334
MaeIII GTNAC 3 cut(s) 150, 190, 405
MboII GAAGA 3 cut(s) 53, 70, 73
MluCI AATT 1 cut(s) 349
Mly113I GGCGCC 1 cut(s) 70
MnlI CCTC 8 cut(s) 112, 240, 395, 445, 447, 450, 489, 490
MseI TTAA 3 cut(s) 129, 504, 534
MslI CAYNNNNRTG 1 cut(s) 157
MspA1I CMGCKG 2 cut(s) 11, 392
MspR9I CCNGG 1 cut(s) 411
MvaI CCWGG 1 cut(s) 411
MvnI CGCG 2 cut(s) 11, 549
MwoI GCNNNNNNNGC 3 cut(s) 91, 289, 536
NarI GGCGCC 1 cut(s) 70
NcoI CCATGG 1 cut(s) 492
NdeI CATATG 1 cut(s) 235
NlaIII CATG 4 cut(s) 143, 191, 226, 496
NlaIV GGNNCC 2 cut(s) 71, 433
NmuCI GTSAC 2 cut(s) 150, 405
NsbI TGCGCA 1 cut(s) 293
OliI CACNNNNGTG 1 cut(s) 157
PfeI GAWTC 3 cut(s) 226, 302, 414
PkrI GCNGC 3 cut(s) 10, 69, 394
PluTI GGCGCC 1 cut(s) 73
Psp1406I AACGTT 1 cut(s) 334
Psp6I CCWGG 1 cut(s) 409
PspEI GGTNACC 1 cut(s) 405
PspGI CCWGG 1 cut(s) 409
PspN4I GGNNCC 2 cut(s) 71, 433
PspPI GGNCC 1 cut(s) 489
PvuII CAGCTG 1 cut(s) 392
RseI CAYNNNNRTG 1 cut(s) 157
SacII CCGCGG 1 cut(s) 12
SaqAI TTAA 3 cut(s) 129, 504, 534
SatI GCNGC 3 cut(s) 9, 68, 393
Sau96I GGNCC 1 cut(s) 489
ScrFI CCNGG 1 cut(s) 411
SetI ASST 7 cut(s) 91, 157, 337, 394, 412, 526, 541
SfaNI GCATC 2 cut(s) 266, 517
SfoI GGCGCC 1 cut(s) 71
Sfr303I CCGCGG 1 cut(s) 12
SgrBI CCGCGG 1 cut(s) 12
SinI GGWCC 1 cut(s) 489
SmiMI CAYNNNNRTG 1 cut(s) 157
Sse9I AATT 1 cut(s) 349
SsiI CCGC 4 cut(s) 9, 11, 67, 76
SspDI GGCGCC 1 cut(s) 69
SspMI CTAG 1 cut(s) 515
StyD4I CCNGG 1 cut(s) 409
StyI CCWWGG 1 cut(s) 492
TaiI ACGT 1 cut(s) 337
TasI AATT 1 cut(s) 349
TauI GCSGC 2 cut(s) 11, 70
TfiI GAWTC 3 cut(s) 226, 302, 414
Tru1I TTAA 3 cut(s) 129, 504, 534
Tru9I TTAA 3 cut(s) 129, 504, 534
TscAI CASTG 1 cut(s) 491
TseFI GTSAC 2 cut(s) 150, 405
TseI GCWGC 1 cut(s) 392
Tsp45I GTSAC 2 cut(s) 150, 405
TspDTI ATGAA 2 cut(s) 17, 239
TspRI CASTG 1 cut(s) 491
VpaK11BI GGWCC 1 cut(s) 489
XbaI TCTAGA 1 cut(s) 514
XspI CTAG 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.