Rmu_co7969448.1_g000001

ATP-dependent RNA helicase SUPV3L1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7969448.1
OG0025523
Physical Location & Seq
Forward (+)
1 .. 375
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7969448.1_g000001.1.cds

Sequence Viewer

Length: 291 bp
agtaagcctcgcaaggttatcttgcacatgggtcccacaaatagtggtaaaacgcacaatgctttaaagcgactcgaatcaagtccatctggcatatactgtggtcctctcagattgttggcctgggaggttgcaaaacggttgaacaaggcaaaagtgccatgtgatttacttacaggacaagagagagaggaagttgatggtgcaaaacacatggctgtgacagttgagatggctgatgtaacctccaactaccattgcgccgttattgatgaaattcaggcaggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000177 GO:0000178 GO:0000957 GO:0000958 GO:0000959 GO:0000960 GO:0000962 GO:0000963 GO:0000965 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007005 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009653 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0010941 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019439 GO:0023051 GO:0023056 GO:0030307 GO:0031123 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0032990 GO:0032991 GO:0034458 GO:0034641 GO:0034655 GO:0035945 GO:0035946 GO:0040008 GO:0042623 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043954 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045025 GO:0045927 GO:0045935 GO:0046483 GO:0046700 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070035 GO:0070584 GO:0070827 GO:0071025 GO:0071026 GO:0071103 GO:0071704 GO:0071840 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098798 GO:0140053 GO:0140097 GO:0140098 GO:1901000 GO:1901002 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1902584 GO:1905354 GO:2000070 GO:2000827
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SUV3_C

Protein Analysis

96

Amino Acids

10.48

Weight (kDa)

8.5

Isoelectric Point (pI)

37.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025523)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co7969448.1_g000001 Rmu_sc0001942.1_g000005
rosa_samantha Rh4BG009100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 275
AcsI RAATTY 1 cut(s) 276
AgsI TTSAA 1 cut(s) 145
AjnI CCWGG 1 cut(s) 122
AoxI GGCC 1 cut(s) 120
ApoI RAATTY 1 cut(s) 276
AspLEI GCGC 1 cut(s) 263
AspS9I GGNCC 2 cut(s) 32, 104
AvaII GGWCC 2 cut(s) 32, 104
BccI CCATC 3 cut(s) 94, 194, 226
BceAI ACGGC 1 cut(s) 248
BciT130I CCWGG 1 cut(s) 124
BfuAI ACCTGC 1 cut(s) 275
Bme1390I CCNGG 1 cut(s) 124
Bme18I GGWCC 2 cut(s) 32, 104
BmgT120I GGNCC 2 cut(s) 32, 104
BmiI GGNNCC 2 cut(s) 33, 34
BmrFI CCNGG 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 123
Bse3DI GCAATG 1 cut(s) 256
BseBI CCWGG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 123
BseMI GCAATG 1 cut(s) 256
BseMII CTCAG 1 cut(s) 124
BshFI GGCC 1 cut(s) 122
BslFI GGGAC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 122
BspANI GGCC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 123
BspLI GGNNCC 2 cut(s) 33, 34
BspMI ACCTGC 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 256
BssECI CCNNGG 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 124
Bst4CI ACNGT 3 cut(s) 101, 141, 226
BstDEI CTNAG 1 cut(s) 110
BstHHI GCGC 1 cut(s) 263
BstNI CCWGG 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 122
BsuRI GGCC 1 cut(s) 122
BveI ACCTGC 1 cut(s) 275
CfoI GCGC 1 cut(s) 263
Cfr13I GGNCC 2 cut(s) 32, 104
CviAII CATG 3 cut(s) 28, 162, 214
CviJI RGCY 4 cut(s) 7, 122, 218, 236
CviKI_1 RGCY 4 cut(s) 7, 122, 218, 236
DdeI CTNAG 1 cut(s) 110
DraI TTTAAA 1 cut(s) 66
Eco47I GGWCC 2 cut(s) 32, 104
EcoO109I RGGNCCY 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 122
FaeI CATG 3 cut(s) 31, 165, 217
FaiI YATR 5 cut(s) 29, 95, 97, 163, 215
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 1 cut(s) 18
FatI CATG 3 cut(s) 27, 161, 213
GlaI GCGC 1 cut(s) 262
HaeIII GGCC 1 cut(s) 122
HhaI GCGC 1 cut(s) 263
Hin1II CATG 3 cut(s) 31, 165, 217
Hin6I GCGC 1 cut(s) 261
HinP1I GCGC 1 cut(s) 261
HinfI GANTC 2 cut(s) 72, 77
Hpy188I TCNGA 1 cut(s) 113
HpyCH4III ACNGT 3 cut(s) 101, 141, 226
HpyCH4V TGCA 3 cut(s) 25, 134, 206
HpyF3I CTNAG 1 cut(s) 110
Hsp92II CATG 3 cut(s) 31, 165, 217
HspAI GCGC 1 cut(s) 261
KflI GGGWCCC 1 cut(s) 32
LpnPI CCDG 6 cut(s) 75, 109, 136, 162, 266, 270
MaeIII GTNAC 2 cut(s) 220, 241
MluCI AATT 1 cut(s) 276
MlyI GAGTC 1 cut(s) 66
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 5 cut(s) 18, 117, 121, 184, 256
MseI TTAA 2 cut(s) 65, 289
MslI CAYNNNNRTG 1 cut(s) 218
MspR9I CCNGG 1 cut(s) 124
MvaI CCWGG 1 cut(s) 124
NlaIII CATG 3 cut(s) 31, 165, 217
NlaIV GGNNCC 2 cut(s) 33, 34
NmuCI GTSAC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 77
PleI GAGTC 1 cut(s) 66
PpsI GAGTC 1 cut(s) 66
PpuMI RGGWCCY 1 cut(s) 32
Psp5II RGGWCCY 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 122
PspGI CCWGG 1 cut(s) 122
PspN4I GGNNCC 2 cut(s) 33, 34
PspPI GGNCC 2 cut(s) 32, 104
PspPPI RGGWCCY 1 cut(s) 32
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 2 cut(s) 65, 289
Sau96I GGNCC 2 cut(s) 32, 104
SchI GAGTC 1 cut(s) 66
ScrFI CCNGG 1 cut(s) 124
SetI ASST 4 cut(s) 18, 132, 248, 289
SinI GGWCC 2 cut(s) 32, 104
SmiMI CAYNNNNRTG 1 cut(s) 218
Sse9I AATT 1 cut(s) 276
StyD4I CCNGG 1 cut(s) 122
TaaI ACNGT 3 cut(s) 101, 141, 226
TaqI TCGA 1 cut(s) 75
TasI AATT 1 cut(s) 276
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 2 cut(s) 65, 289
Tru9I TTAA 2 cut(s) 65, 289
TseFI GTSAC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 1 cut(s) 288
VpaK11BI GGWCC 2 cut(s) 32, 104
XapI RAATTY 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.