Rh4BG009100

ATP-dependent RNA helicase SUPV3L1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0025523
Physical Location & Seq
Forward (+)
1259267 .. 1262719
3453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG009100.1

Sequence Viewer

Length: 882 bp
ATGGCGGCATCCTTATTACTTCGCCGCAGAGTTTCATCTGCCGGCGTTTCTCGCACTCTCCAAGGTCTAGCGGGTGGAATGGAGCCCTTTTGTCTACACTTAGAATTGAAGATTGGAGCTTTGGTGAGTTTCTCTGATAAATCAAGGCAGTACAGCAGCTTCAGTGGCACCACGAGCTTCGATTTTCTAGACTTGACTTCTCCTCATACATGGTATCCAAAAGCTCGTAGTAAGCCTCGCAAGGTTATCTTGCACATGGGTCCCACAAATAGTGGTAAAACGCACAATGCTTTAAAGCGACTCGAATCAAGTCCATCTGGCATATACTGTGGTCCTCTCAGATTGTTGGCCTGGGAGGTTGCAAAACGGTTGAACAAGGCAAAAGTGCCATGTGATTTACTTACAGGACAAGAGAGAGAGGAAGTTGATGGTGCAAAACACATGGCTGTGACAGTTGAGATGGCTGATGTAACCTCCAACTACCATTGCGCCGTTATTGATGAAATTCAGATGCTGGGCTGTAGGAACAGAGGTTTTTCTTTCACACGTGCTCTATTAGGAATTTCTGCTGATGAACTTCACCTTTGTGGAGATGCAGCTGCCGTCCCACTTATTCAGAAAATGTTAAAAGTGACCAGTGATCAAGTTGAGGTTCAATTCTATGATAGACTTTCACCTCTTGTTCCAATGAAGGTTCCTCTTGGTTCCTTTTCTAATATAAGGACAGGCGATTGCATTGTTACATTTTCACGGCGTGAAATATACAGACTAAAGAAACAAATTGAAAGTGATGGAAAGCATCTCTGTTCTGTTGTGTATGGTTCACTTCCACCAGAGACCCGAACAAGACAGCACCATATGTGGTTCCTGAGGATTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000177 GO:0000178 GO:0000957 GO:0000958 GO:0000959 GO:0000960 GO:0000962 GO:0000963 GO:0000965 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007005 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009653 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0010941 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019439 GO:0023051 GO:0023056 GO:0030307 GO:0031123 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0032990 GO:0032991 GO:0034458 GO:0034641 GO:0034655 GO:0035945 GO:0035946 GO:0040008 GO:0042623 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043954 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045025 GO:0045927 GO:0045935 GO:0046483 GO:0046700 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070035 GO:0070584 GO:0070827 GO:0071025 GO:0071026 GO:0071103 GO:0071704 GO:0071840 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098798 GO:0140053 GO:0140097 GO:0140098 GO:1901000 GO:1901002 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1902584 GO:1905354 GO:2000070 GO:2000827
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SUV3_C

Protein Analysis

293

Amino Acids

32.62

Weight (kDa)

9.43

Isoelectric Point (pI)

44.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEXQc_Suv3 PF22527 68 - 221 4.1e-66 DEXQ-box helicase domain of Suv3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0025523)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co7969448.1_g000001 Rmu_sc0001942.1_g000005
rosa_samantha Rh4BG009100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AccI GTMKAC 1 cut(s) 94
AciI CCGC 3 cut(s) 5, 25, 71
AcsI RAATTY 2 cut(s) 504, 561
AcuI CTGAAG 1 cut(s) 145
AcvI CACGTG 1 cut(s) 548
AdeI CACNNNGTG 1 cut(s) 755
AfaI GTAC 1 cut(s) 152
AflIII ACRYGT 1 cut(s) 545
AgsI TTSAA 4 cut(s) 109, 373, 656, 785
AjnI CCWGG 1 cut(s) 350
AjuI GAANNNNNNNTTGG 2 cut(s) 96, 128
AleI CACNNNNGTG 1 cut(s) 585
AluBI AGCT 5 cut(s) 119, 159, 177, 224, 599
AluI AGCT 5 cut(s) 119, 159, 177, 224, 599
Alw21I GWGCWC 1 cut(s) 553
Alw26I GTCTC 1 cut(s) 830
AlwNI CAGNNNCTG 1 cut(s) 514
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 3 cut(s) 156, 596, 599
ApoI RAATTY 2 cut(s) 504, 561
AspLEI GCGC 1 cut(s) 491
AspS9I GGNCC 2 cut(s) 260, 332
AsuHPI GGTGA 3 cut(s) 136, 572, 666
AvaII GGWCC 2 cut(s) 260, 332
AxyI CCTNAGG 1 cut(s) 869
BanI GGYRCC 1 cut(s) 167
BanII GRGCYC 1 cut(s) 87
BarI GAAGNNNNNNTAC 2 cut(s) 143, 175
BauI CACGAG 1 cut(s) 172
BbrPI CACGTG 1 cut(s) 548
Bbv12I GWGCWC 1 cut(s) 553
BbvI GCAGC 3 cut(s) 168, 586, 608
BccI CCATC 4 cut(s) 322, 422, 454, 785
BceAI ACGGC 3 cut(s) 476, 587, 767
BciT130I CCWGG 1 cut(s) 352
BciVI GTATCC 1 cut(s) 225
BclI TGATCA 1 cut(s) 640
BcoDI GTCTC 1 cut(s) 830
BfaI CTAG 2 cut(s) 68, 188
BfmI CTRYAG 1 cut(s) 520
BfuI GTATCC 1 cut(s) 225
BisI GCNGC 5 cut(s) 6, 25, 157, 597, 600
BlsI GCNGC 5 cut(s) 7, 26, 158, 598, 601
Bme1390I CCNGG 1 cut(s) 352
Bme18I GGWCC 2 cut(s) 260, 332
BmgT120I GGNCC 2 cut(s) 260, 332
BmiI GGNNCC 7 cut(s) 84, 169, 261, 262, 696, 706, 866
BmrFI CCNGG 1 cut(s) 352
BmsI GCATC 4 cut(s) 17, 501, 583, 808
BsaAI YACGTR 1 cut(s) 548
BsaI GGTCTC 1 cut(s) 830
BsaJI CCNNGG 2 cut(s) 61, 351
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
Bse118I RCCGGY 1 cut(s) 41
Bse1I ACTGG 1 cut(s) 636
Bse21I CCTNAGG 1 cut(s) 869
Bse3DI GCAATG 1 cut(s) 484
BseBI CCWGG 1 cut(s) 352
BseDI CCNNGG 2 cut(s) 61, 351
BseGI GGATG 1 cut(s) 8
BseMI GCAATG 1 cut(s) 484
BseMII CTCAG 2 cut(s) 352, 860
BseNI ACTGG 1 cut(s) 636
BseRI GAGGAG 1 cut(s) 192
BseXI GCAGC 3 cut(s) 168, 586, 608
BseYI CCCAGC 1 cut(s) 514
BshFI GGCC 1 cut(s) 350
BshNI GGYRCC 1 cut(s) 167
BsiHKAI GWGCWC 1 cut(s) 553
BsiSI CCGG 1 cut(s) 42
BslFI GGGAC 2 cut(s) 246, 590
BsmAI GTCTC 1 cut(s) 830
BsmFI GGGAC 2 cut(s) 246, 590
BsnI GGCC 1 cut(s) 350
Bso31I GGTCTC 1 cut(s) 830
Bsp1286I GDGCHC 2 cut(s) 87, 553
Bsp143I GATC 1 cut(s) 640
BspACI CCGC 3 cut(s) 5, 25, 71
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 2 cut(s) 351, 861
BspLI GGNNCC 7 cut(s) 84, 169, 261, 262, 696, 706, 866
BspT107I GGYRCC 1 cut(s) 167
BspTNI GGTCTC 1 cut(s) 830
BsrDI GCAATG 1 cut(s) 484
BsrFI RCCGGY 1 cut(s) 41
BsrI ACTGG 1 cut(s) 636
BssAI RCCGGY 1 cut(s) 41
BssECI CCNNGG 2 cut(s) 61, 351
BssMI GATC 1 cut(s) 640
BssSI CACGAG 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 61
Bst2BI CACGAG 1 cut(s) 172
Bst2UI CCWGG 1 cut(s) 352
Bst4CI ACNGT 3 cut(s) 329, 369, 454
BstBAI YACGTR 1 cut(s) 548
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 3 cut(s) 100, 338, 869
BstF5I GGATG 1 cut(s) 8
BstHHI GCGC 1 cut(s) 491
BstKTI GATC 1 cut(s) 643
BstMAI GTCTC 1 cut(s) 830
BstMBI GATC 1 cut(s) 640
BstMWI GCNNNNNNNGC 3 cut(s) 51, 165, 174
BstNI CCWGG 1 cut(s) 352
BstSCI CCNGG 1 cut(s) 350
BstSFI CTRYAG 1 cut(s) 520
BstV1I GCAGC 3 cut(s) 168, 586, 608
Bsu36I CCTNAGG 1 cut(s) 869
BsuI GTATCC 1 cut(s) 225
BsuRI GGCC 1 cut(s) 350
BtsCI GGATG 1 cut(s) 8
BtsIMutI CAGTG 2 cut(s) 169, 643
Cac8I GCNNGC 1 cut(s) 43
CaiI CAGNNNCTG 1 cut(s) 514
CfoI GCGC 1 cut(s) 491
Cfr10I RCCGGY 1 cut(s) 41
Cfr13I GGNCC 2 cut(s) 260, 332
Csp6I GTAC 1 cut(s) 151
CviAII CATG 4 cut(s) 210, 256, 390, 442
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 3 cut(s) 100, 338, 869
DpnI GATC 1 cut(s) 642
DpnII GATC 1 cut(s) 640
DraI TTTAAA 1 cut(s) 294
DraIII CACNNNGTG 1 cut(s) 755
Eco130I CCWWGG 1 cut(s) 61
Eco24I GRGCYC 1 cut(s) 87
Eco31I GGTCTC 1 cut(s) 830
Eco47I GGWCC 2 cut(s) 260, 332
Eco57I CTGAAG 1 cut(s) 145
Eco72I CACGTG 1 cut(s) 548
Eco81I CCTNAGG 1 cut(s) 869
EcoO109I RGGNCCY 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 350
EcoT14I CCWWGG 1 cut(s) 61
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 61
FaeI CATG 4 cut(s) 213, 259, 393, 445
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FaqI GGGAC 2 cut(s) 246, 590
FatI CATG 4 cut(s) 209, 255, 389, 441
FauI CCCGC 1 cut(s) 64
FauNDI CATATG 1 cut(s) 858
FbaI TGATCA 1 cut(s) 640
FblI GTMKAC 1 cut(s) 94
Fnu4HI GCNGC 5 cut(s) 6, 25, 157, 597, 600
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 5 cut(s) 6, 25, 157, 597, 600
FspBI CTAG 2 cut(s) 68, 188
GlaI GCGC 1 cut(s) 490
GluI GCNGC 5 cut(s) 6, 25, 157, 597, 600
GsaI CCCAGC 1 cut(s) 518
HaeIII GGCC 1 cut(s) 350
HapII CCGG 1 cut(s) 42
HhaI GCGC 1 cut(s) 491
Hin1II CATG 4 cut(s) 213, 259, 393, 445
Hin6I GCGC 1 cut(s) 489
HinP1I GCGC 1 cut(s) 489
HinfI GANTC 2 cut(s) 300, 305
HpaII CCGG 1 cut(s) 42
HphI GGTGA 3 cut(s) 136, 572, 666
Hpy166II GTNNAC 2 cut(s) 95, 824
Hpy188I TCNGA 4 cut(s) 136, 341, 510, 618
Hpy188III TCNNGA 2 cut(s) 188, 868
Hpy8I GTNNAC 2 cut(s) 95, 824
HpyAV CCTTC 1 cut(s) 685
HpyCH4III ACNGT 3 cut(s) 329, 369, 454
HpyCH4IV ACGT 1 cut(s) 547
HpyCH4V TGCA 5 cut(s) 253, 362, 434, 596, 735
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 165, 174
HpyF3I CTNAG 3 cut(s) 100, 338, 869
HpySE526I ACGT 1 cut(s) 547
Hsp92II CATG 4 cut(s) 213, 259, 393, 445
HspAI GCGC 1 cut(s) 489
KflI GGGWCCC 1 cut(s) 260
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
Ksp22I TGATCA 1 cut(s) 640
Kzo9I GATC 1 cut(s) 640
LmnI GCTCC 2 cut(s) 82, 116
LpnPI CCDG 9 cut(s) 55, 303, 337, 364, 390, 500, 649, 711, 846
Lsp1109I GCAGC 3 cut(s) 168, 586, 608
LweI GCATC 4 cut(s) 17, 501, 583, 808
MaeI CTAG 2 cut(s) 68, 188
MaeII ACGT 1 cut(s) 547
MaeIII GTNAC 4 cut(s) 448, 469, 631, 739
MalI GATC 1 cut(s) 642
MboI GATC 1 cut(s) 640
MboII GAAGA 1 cut(s) 121
MhlI GDGCHC 2 cut(s) 87, 553
MluCI AATT 5 cut(s) 104, 504, 561, 656, 780
MlyI GAGTC 1 cut(s) 294
MmeI TCCRAC 1 cut(s) 501
MroNI GCCGGC 1 cut(s) 41
MseI TTAA 2 cut(s) 293, 626
MslI CAYNNNNRTG 2 cut(s) 446, 585
MspA1I CMGCKG 1 cut(s) 599
MspI CCGG 1 cut(s) 42
MspR9I CCNGG 1 cut(s) 352
MvaI CCWGG 1 cut(s) 352
MwoI GCNNNNNNNGC 3 cut(s) 51, 165, 174
NaeI GCCGGC 1 cut(s) 43
NdeI CATATG 1 cut(s) 858
NdeII GATC 1 cut(s) 640
NgoMIV GCCGGC 1 cut(s) 41
NlaIII CATG 4 cut(s) 213, 259, 393, 445
NlaIV GGNNCC 7 cut(s) 84, 169, 261, 262, 696, 706, 866
NmuCI GTSAC 2 cut(s) 448, 631
OliI CACNNNNGTG 1 cut(s) 585
PdiI GCCGGC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 305
PkrI GCNGC 5 cut(s) 7, 26, 158, 598, 601
PleI GAGTC 1 cut(s) 294
PmaCI CACGTG 1 cut(s) 548
PmlI CACGTG 1 cut(s) 548
PpsI GAGTC 1 cut(s) 294
Ppu21I YACGTR 1 cut(s) 548
PpuMI RGGWCCY 1 cut(s) 260
Psp5II RGGWCCY 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 350
PspCI CACGTG 1 cut(s) 548
PspFI CCCAGC 1 cut(s) 514
PspGI CCWGG 1 cut(s) 350
PspN4I GGNNCC 7 cut(s) 84, 169, 261, 262, 696, 706, 866
PspPI GGNCC 2 cut(s) 260, 332
PspPPI RGGWCCY 1 cut(s) 260
PstNI CAGNNNCTG 1 cut(s) 514
PvuII CAGCTG 1 cut(s) 599
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
RseI CAYNNNNRTG 2 cut(s) 446, 585
SaqAI TTAA 2 cut(s) 293, 626
SatI GCNGC 5 cut(s) 6, 25, 157, 597, 600
Sau3AI GATC 1 cut(s) 640
Sau96I GGNCC 2 cut(s) 260, 332
SchI GAGTC 1 cut(s) 294
ScrFI CCNGG 1 cut(s) 352
SduI GDGCHC 2 cut(s) 87, 553
SfaNI GCATC 4 cut(s) 17, 501, 583, 808
SfcI CTRYAG 1 cut(s) 520
SinI GGWCC 2 cut(s) 260, 332
SmiMI CAYNNNNRTG 2 cut(s) 446, 585
Sse9I AATT 5 cut(s) 104, 504, 561, 656, 780
SsiI CCGC 3 cut(s) 5, 25, 71
SspMI CTAG 2 cut(s) 68, 188
StyD4I CCNGG 1 cut(s) 350
StyI CCWWGG 1 cut(s) 61
TaaI ACNGT 3 cut(s) 329, 369, 454
TaiI ACGT 1 cut(s) 550
TaqI TCGA 2 cut(s) 180, 303
TasI AATT 5 cut(s) 104, 504, 561, 656, 780
TatI WGTACW 1 cut(s) 150
TauI GCSGC 2 cut(s) 8, 27
TfiI GAWTC 1 cut(s) 305
Tru1I TTAA 2 cut(s) 293, 626
Tru9I TTAA 2 cut(s) 293, 626
TscAI CASTG 2 cut(s) 169, 643
TseFI GTSAC 2 cut(s) 448, 631
TseI GCWGC 3 cut(s) 156, 596, 599
Tsp45I GTSAC 2 cut(s) 448, 631
TspDTI ATGAA 4 cut(s) 24, 516, 588, 704
TspRI CASTG 2 cut(s) 169, 643
VpaK11BI GGWCC 2 cut(s) 260, 332
XapI RAATTY 2 cut(s) 504, 561
XbaI TCTAGA 1 cut(s) 187
XmiI GTMKAC 1 cut(s) 94
XspI CTAG 2 cut(s) 68, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.