Rmu_co8003014.1_g000001

Histidine kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8003014.1
OG0022566
Physical Location & Seq
Reverse (-)
1 .. 411
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8003014.1_g000001.1.cds

Sequence Viewer

Length: 369 bp
atggacaccaagagtagtagtttgcttggtgatggtgccaatatcaaattgtgggagaagatcccattgaacattattaagatccgccatcattacaatgactataatgggtccaagagagttcggaagacttggttgaagaggctcttggtttcgtgggtggttggttggactattgcttgcttttggatcttctgggacatgagctcagtggctagtgagaagaggaaggagactcttacgaatatgtgtgatgagagagcaaggatgttgcaggatcagtttattatgagcatgaaccatattcaggccatgtcgattctgatctccacattccacaatagcaagtatccatctgcaattgaccag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009266 GO:0009267 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009743 GO:0009744 GO:0009755 GO:0009884 GO:0009888 GO:0009894 GO:0009909 GO:0009987 GO:0009991 GO:0010029 GO:0010033 GO:0010035 GO:0010087 GO:0010150 GO:0010271 GO:0010959 GO:0012505 GO:0016020 GO:0016036 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031329 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0033554 GO:0033993 GO:0034285 GO:0034756 GO:0034757 GO:0036211 GO:0038023 GO:0040007 GO:0042175 GO:0042221 GO:0042594 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048509 GO:0048519 GO:0048580 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051171 GO:0051193 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070417 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071368 GO:0071396 GO:0071495 GO:0071496 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0090056 GO:0090693 GO:0097305 GO:0097306 GO:0098542 GO:0098827 GO:0099402 GO:0140096 GO:1900140 GO:1901401 GO:1901404 GO:1901564 GO:1901700 GO:1901701 GO:2000026 GO:2000241
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
CHASE HATPase_c HisKA Response_reg

Protein Analysis

123

Amino Acids

14.47

Weight (kDa)

9.55

Isoelectric Point (pI)

57.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022566)

Species Orthologous Gene IDs
pyrus_communis pycom16g05980 pycom16g10330
rosa_multiflora Rmu_co8003014.1_g000001 Rmu_sc0011796.1_g000009

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 35
AciI CCGC 1 cut(s) 85
AclWI GGATC 4 cut(s) 55, 76, 197, 285
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 2 cut(s) 70, 139
AjuI GAANNNNNNNTTGG 2 cut(s) 131, 163
AluBI AGCT 1 cut(s) 207
AluI AGCT 1 cut(s) 207
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 4 cut(s) 55, 76, 197, 285
AoxI GGCC 1 cut(s) 309
AspS9I GGNCC 1 cut(s) 111
AsuHPI GGTGA 1 cut(s) 41
AvaII GGWCC 1 cut(s) 111
BanI GGYRCC 1 cut(s) 35
BanII GRGCYC 1 cut(s) 209
BbsI GAAGAC 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 209
BccI CCATC 3 cut(s) 26, 96, 361
BciVI GTATCC 1 cut(s) 360
BcoDI GTCTC 1 cut(s) 227
BfaI CTAG 1 cut(s) 216
BfuI GTATCC 1 cut(s) 360
Bme18I GGWCC 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 111
BmiI GGNNCC 2 cut(s) 37, 112
BpiI GAAGAC 1 cut(s) 134
BsaBI GATNNNNATC 1 cut(s) 323
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse8I GATNNNNATC 1 cut(s) 323
BseGI GGATG 1 cut(s) 273
BseJI GATNNNNATC 1 cut(s) 323
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 222
BshFI GGCC 1 cut(s) 311
BshNI GGYRCC 1 cut(s) 35
BsiHKAI GWGCWC 1 cut(s) 209
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 307
BsmAI GTCTC 1 cut(s) 227
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 1 cut(s) 311
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 5 cut(s) 60, 81, 189, 277, 324
BspACI CCGC 1 cut(s) 85
BspANI GGCC 1 cut(s) 311
BspCNI CTCAG 1 cut(s) 221
BspLI GGNNCC 2 cut(s) 37, 112
BspPI GGATC 4 cut(s) 55, 76, 197, 285
BspT107I GGYRCC 1 cut(s) 35
BssMI GATC 5 cut(s) 60, 81, 189, 277, 324
Bst6I CTCTTC 2 cut(s) 134, 218
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 1 cut(s) 208
BstF5I GGATG 1 cut(s) 273
BstKTI GATC 5 cut(s) 63, 84, 192, 280, 327
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 5 cut(s) 60, 81, 189, 277, 324
BstV2I GAAGAC 1 cut(s) 134
BstX2I RGATCY 3 cut(s) 60, 81, 189
BstYI RGATCY 3 cut(s) 60, 81, 189
BsuI GTATCC 1 cut(s) 360
BsuRI GGCC 1 cut(s) 311
BtsCI GGATG 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 111
CviAII CATG 3 cut(s) 202, 295, 313
CviJI RGCY 4 cut(s) 145, 207, 215, 311
CviKI_1 RGCY 4 cut(s) 145, 207, 215, 311
DdeI CTNAG 1 cut(s) 208
DpnI GATC 5 cut(s) 62, 83, 191, 279, 326
DpnII GATC 5 cut(s) 60, 81, 189, 277, 324
Eam1104I CTCTTC 2 cut(s) 134, 218
EarI CTCTTC 2 cut(s) 134, 218
EciI GGCGGA 1 cut(s) 74
Ecl136II GAGCTC 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 209
Eco47I GGWCC 1 cut(s) 111
Eco53kI GAGCTC 1 cut(s) 207
EcoICRI GAGCTC 1 cut(s) 207
EcoT38I GRGCYC 1 cut(s) 209
FaeI CATG 3 cut(s) 205, 298, 316
FaiI YATR 7 cut(s) 105, 203, 248, 290, 296, 303, 314
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 1 cut(s) 212
FatI CATG 3 cut(s) 201, 294, 312
FokI GGATG 1 cut(s) 280
FriOI GRGCYC 1 cut(s) 209
FspBI CTAG 1 cut(s) 216
HaeIII GGCC 1 cut(s) 311
Hin1II CATG 3 cut(s) 205, 298, 316
HinfI GANTC 2 cut(s) 235, 319
HphI GGTGA 1 cut(s) 41
Hpy188I TCNGA 2 cut(s) 126, 324
HpyAV CCTTC 1 cut(s) 223
HpyCH4V TGCA 2 cut(s) 274, 359
HpyF3I CTNAG 1 cut(s) 208
Hsp92II CATG 3 cut(s) 205, 298, 316
Kzo9I GATC 5 cut(s) 60, 81, 189, 277, 324
LpnPI CCDG 3 cut(s) 181, 260, 293
MaeI CTAG 1 cut(s) 216
MalI GATC 5 cut(s) 62, 83, 191, 279, 326
MboI GATC 5 cut(s) 60, 81, 189, 277, 324
MboII GAAGA 5 cut(s) 70, 139, 151, 184, 235
MfeI CAATTG 1 cut(s) 360
MflI RGATCY 3 cut(s) 60, 81, 189
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 2 cut(s) 47, 360
MlyI GAGTC 1 cut(s) 229
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 2 cut(s) 135, 219
MseI TTAA 1 cut(s) 78
MslI CAYNNNNRTG 1 cut(s) 96
MunI CAATTG 1 cut(s) 360
NdeII GATC 5 cut(s) 60, 81, 189, 277, 324
NlaIII CATG 3 cut(s) 205, 298, 316
NlaIV GGNNCC 2 cut(s) 37, 112
PfeI GAWTC 1 cut(s) 319
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
Psp124BI GAGCTC 1 cut(s) 209
PspN4I GGNNCC 2 cut(s) 37, 112
PspPI GGNCC 1 cut(s) 111
PsuI RGATCY 3 cut(s) 60, 81, 189
RseI CAYNNNNRTG 1 cut(s) 96
SacI GAGCTC 1 cut(s) 209
SaqAI TTAA 1 cut(s) 78
Sau3AI GATC 5 cut(s) 60, 81, 189, 277, 324
Sau96I GGNCC 1 cut(s) 111
SchI GAGTC 1 cut(s) 229
SduI GDGCHC 1 cut(s) 209
SetI ASST 1 cut(s) 209
SinI GGWCC 1 cut(s) 111
SmiMI CAYNNNNRTG 1 cut(s) 96
Sse9I AATT 2 cut(s) 47, 360
SsiI CCGC 1 cut(s) 85
SspMI CTAG 1 cut(s) 216
SstI GAGCTC 1 cut(s) 209
TaqI TCGA 1 cut(s) 317
TasI AATT 2 cut(s) 47, 360
TfiI GAWTC 1 cut(s) 319
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 1 cut(s) 216
TspDTI ATGAA 1 cut(s) 311
TspRI CASTG 1 cut(s) 216
VpaK11BI GGWCC 1 cut(s) 111
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.