Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011796.1

Orthogroup ID

OG0022566

Physical Location & Seq

Genomic Coordinates Reverse (-)

33525 .. 34115

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011796.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atgttcgcactgtttctagctaacttgggttggctggtcctgtggatgagtttgcttcatgtcttcgggttcggtttaaaagtggggcatctactctggatgctatgttgctggattgtatctgtgatttgcatgaattggtaccttaatggtggaattatggacaccaagagtagtagtttgcttggtgatggtgccaatatcaaattgtgggagaagatcccattgaacattattaagatccgccatcattacaatgactataatgggtccaagagagttcggaagacttggttgaagaggctcttggtttcgtgggtggttggttggactattgcttgcttttggatcttctgggacatgagctcagtggctagtgagaagaggaaggagactcttacgaatatgtgtgatgagagagcaaggatgttgcaggatcagtttattgtgagcatgaaccatattcaggccatgtcgattctgatctccacattccacaatagcaagtatccatctgcaattgaccaggtagctatatcattcataccaaatctgaaggaagttggttttgattcaccagccagtagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009266 GO:0009267 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009743 GO:0009744 GO:0009755 GO:0009884 GO:0009888 GO:0009894 GO:0009909 GO:0009987 GO:0009991 GO:0010029 GO:0010033 GO:0010035 GO:0010087 GO:0010150 GO:0010271 GO:0010959 GO:0012505 GO:0016020 GO:0016036 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031329 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0033554 GO:0033993 GO:0034285 GO:0034756 GO:0034757 GO:0036211 GO:0038023 GO:0040007 GO:0042175 GO:0042221 GO:0042594 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048509 GO:0048519 GO:0048580 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051171 GO:0051193 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070417 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071368 GO:0071396 GO:0071495 GO:0071496 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0090056 GO:0090693 GO:0097305 GO:0097306 GO:0098542 GO:0098827 GO:0099402 GO:0140096 GO:1900140 GO:1901401 GO:1901404 GO:1901564 GO:1901700 GO:1901701 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CHASE HATPase_c HisKA Response_reg

Protein Analysis

196

Amino Acids

22.61

Weight (kDa)

9.16

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022566)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g05980 pycom16g10330
rosa_multiflora	Rmu_co8003014.1_g000001 Rmu_sc0011796.1_g000009

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	141
AccB1I	GGYRCC	2 cut(s)	141, 194
AciI	CCGC	1 cut(s)	244
AclWI	GGATC	4 cut(s)	214, 235, 356, 444
AcuI	CTGAAG	1 cut(s)	575
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	466
AgsI	TTSAA	2 cut(s)	229, 298
AjnI	CCWGG	1 cut(s)	525
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AluBI	AGCT	3 cut(s)	20, 366, 533
AluI	AGCT	3 cut(s)	20, 366, 533
Alw21I	GWGCWC	1 cut(s)	368
Alw26I	GTCTC	1 cut(s)	386
AlwI	GGATC	4 cut(s)	214, 235, 356, 444
AoxI	GGCC	1 cut(s)	468
Asp718I	GGTACC	1 cut(s)	141
AspS9I	GGNCC	2 cut(s)	37, 270
AsuHPI	GGTGA	2 cut(s)	200, 567
AvaII	GGWCC	2 cut(s)	37, 270
BanI	GGYRCC	2 cut(s)	141, 194
BanII	GRGCYC	1 cut(s)	368
BbsI	GAAGAC	2 cut(s)	55, 293
Bbv12I	GWGCWC	1 cut(s)	368
BccI	CCATC	3 cut(s)	185, 255, 520
BciT130I	CCWGG	1 cut(s)	527
BciVI	GTATCC	1 cut(s)	519
BcoDI	GTCTC	1 cut(s)	386
BfaI	CTAG	2 cut(s)	17, 375
BfuI	GTATCC	1 cut(s)	519
Bme1390I	CCNGG	1 cut(s)	527
Bme18I	GGWCC	2 cut(s)	37, 270
BmgT120I	GGNCC	2 cut(s)	37, 270
BmiI	GGNNCC	3 cut(s)	143, 196, 271
BmrFI	CCNGG	1 cut(s)	527
BmsI	GCATC	2 cut(s)	90, 97
BpiI	GAAGAC	2 cut(s)	55, 293
BsaBI	GATNNNNATC	1 cut(s)	482
Bsc4I	CCNNNNNNNGG	1 cut(s)	466
Bse1I	ACTGG	1 cut(s)	582
Bse8I	GATNNNNATC	1 cut(s)	482
BseBI	CCWGG	1 cut(s)	527
BseGI	GGATG	3 cut(s)	51, 105, 432
BseJI	GATNNNNATC	1 cut(s)	482
BseLI	CCNNNNNNNGG	1 cut(s)	466
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	1 cut(s)	582
BshFI	GGCC	1 cut(s)	470
BshNI	GGYRCC	2 cut(s)	141, 194
BsiHKAI	GWGCWC	1 cut(s)	368
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	466
BsmAI	GTCTC	1 cut(s)	386
BsmFI	GGGAC	1 cut(s)	371
BsnI	GGCC	1 cut(s)	470
Bsp1286I	GDGCHC	1 cut(s)	368
Bsp143I	GATC	5 cut(s)	219, 240, 348, 436, 483
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	1 cut(s)	470
BspCNI	CTCAG	1 cut(s)	380
BspLI	GGNNCC	3 cut(s)	143, 196, 271
BspPI	GGATC	4 cut(s)	214, 235, 356, 444
BspT107I	GGYRCC	2 cut(s)	141, 194
BsrI	ACTGG	1 cut(s)	582
BssMI	GATC	5 cut(s)	219, 240, 348, 436, 483
Bst2UI	CCWGG	1 cut(s)	527
Bst4CI	ACNGT	1 cut(s)	12
Bst6I	CTCTTC	2 cut(s)	293, 377
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	1 cut(s)	367
BstF5I	GGATG	3 cut(s)	51, 105, 432
BstKTI	GATC	5 cut(s)	222, 243, 351, 439, 486
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	5 cut(s)	219, 240, 348, 436, 483
BstNI	CCWGG	1 cut(s)	527
BstSCI	CCNGG	1 cut(s)	525
BstV2I	GAAGAC	2 cut(s)	55, 293
BstX2I	RGATCY	3 cut(s)	219, 240, 348
BstYI	RGATCY	3 cut(s)	219, 240, 348
BsuI	GTATCC	1 cut(s)	519
BsuRI	GGCC	1 cut(s)	470
BtsCI	GGATG	3 cut(s)	51, 105, 432
BtsIMutI	CAGTG	2 cut(s)	8, 375
Cac8I	GCNNGC	1 cut(s)	340
Cfr13I	GGNCC	2 cut(s)	37, 270
CsiI	ACCWGGT	1 cut(s)	525
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	5 cut(s)	59, 133, 361, 454, 472
CviJI	RGCY	8 cut(s)	20, 34, 304, 366, 374, 470, 533, 581
CviKI_1	RGCY	8 cut(s)	20, 34, 304, 366, 374, 470, 533, 581
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	1 cut(s)	367
DpnI	GATC	5 cut(s)	221, 242, 350, 438, 485
DpnII	GATC	5 cut(s)	219, 240, 348, 436, 483
DraI	TTTAAA	1 cut(s)	78
Eam1104I	CTCTTC	2 cut(s)	293, 377
EarI	CTCTTC	2 cut(s)	293, 377
EciI	GGCGGA	1 cut(s)	233
Ecl136II	GAGCTC	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	368
Eco47I	GGWCC	2 cut(s)	37, 270
Eco53kI	GAGCTC	1 cut(s)	366
Eco57I	CTGAAG	1 cut(s)	575
EcoICRI	GAGCTC	1 cut(s)	366
EcoRII	CCWGG	1 cut(s)	525
EcoT38I	GRGCYC	1 cut(s)	368
FaeI	CATG	5 cut(s)	62, 136, 364, 457, 475
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	5 cut(s)	58, 132, 360, 453, 471
FokI	GGATG	3 cut(s)	58, 112, 439
FriOI	GRGCYC	1 cut(s)	368
FspBI	CTAG	2 cut(s)	17, 375
HaeIII	GGCC	1 cut(s)	470
Hin1II	CATG	5 cut(s)	62, 136, 364, 457, 475
HinfI	GANTC	3 cut(s)	394, 478, 572
HphI	GGTGA	2 cut(s)	200, 567
Hpy188I	TCNGA	3 cut(s)	285, 483, 555
Hpy188III	TCNNGA	1 cut(s)	97
HpyAV	CCTTC	2 cut(s)	382, 550
HpyCH4III	ACNGT	1 cut(s)	12
HpyCH4V	TGCA	3 cut(s)	132, 433, 518
HpyF3I	CTNAG	1 cut(s)	367
Hsp92II	CATG	5 cut(s)	62, 136, 364, 457, 475
KpnI	GGTACC	1 cut(s)	145
Kzo9I	GATC	5 cut(s)	219, 240, 348, 436, 483
LpnPI	CCDG	9 cut(s)	20, 53, 82, 97, 340, 419, 452, 512, 539
LweI	GCATC	2 cut(s)	90, 97
MabI	ACCWGGT	1 cut(s)	525
MaeI	CTAG	2 cut(s)	17, 375
MalI	GATC	5 cut(s)	221, 242, 350, 438, 485
MboI	GATC	5 cut(s)	219, 240, 348, 436, 483
MboII	GAAGA	6 cut(s)	55, 229, 298, 310, 343, 394
MfeI	CAATTG	1 cut(s)	519
MflI	RGATCY	3 cut(s)	219, 240, 348
MhlI	GDGCHC	1 cut(s)	368
MluCI	AATT	4 cut(s)	136, 156, 206, 519
MlyI	GAGTC	1 cut(s)	388
MmeI	TCCRAC	1 cut(s)	308
MnlI	CCTC	2 cut(s)	294, 378
MseI	TTAA	4 cut(s)	77, 147, 237, 589
MslI	CAYNNNNRTG	1 cut(s)	255
MspR9I	CCNGG	1 cut(s)	527
MunI	CAATTG	1 cut(s)	519
MvaI	CCWGG	1 cut(s)	527
NdeII	GATC	5 cut(s)	219, 240, 348, 436, 483
NlaIII	CATG	5 cut(s)	62, 136, 364, 457, 475
NlaIV	GGNNCC	3 cut(s)	143, 196, 271
PfeI	GAWTC	2 cut(s)	478, 572
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
Psp124BI	GAGCTC	1 cut(s)	368
Psp6I	CCWGG	1 cut(s)	525
PspGI	CCWGG	1 cut(s)	525
PspN4I	GGNNCC	3 cut(s)	143, 196, 271
PspPI	GGNCC	2 cut(s)	37, 270
PsuI	RGATCY	3 cut(s)	219, 240, 348
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
RseI	CAYNNNNRTG	1 cut(s)	255
SacI	GAGCTC	1 cut(s)	368
SaqAI	TTAA	4 cut(s)	77, 147, 237, 589
Sau3AI	GATC	5 cut(s)	219, 240, 348, 436, 483
Sau96I	GGNCC	2 cut(s)	37, 270
SchI	GAGTC	1 cut(s)	388
ScrFI	CCNGG	1 cut(s)	527
SduI	GDGCHC	1 cut(s)	368
SetI	ASST	5 cut(s)	22, 147, 368, 531, 535
SexAI	ACCWGGT	1 cut(s)	525
SfaNI	GCATC	2 cut(s)	90, 97
SinI	GGWCC	2 cut(s)	37, 270
SmiMI	CAYNNNNRTG	1 cut(s)	255
Sse9I	AATT	4 cut(s)	136, 156, 206, 519
SsiI	CCGC	1 cut(s)	244
SspMI	CTAG	2 cut(s)	17, 375
SstI	GAGCTC	1 cut(s)	368
StyD4I	CCNGG	1 cut(s)	525
TaaI	ACNGT	1 cut(s)	12
TaqI	TCGA	1 cut(s)	476
TasI	AATT	4 cut(s)	136, 156, 206, 519
TfiI	GAWTC	2 cut(s)	478, 572
Tru1I	TTAA	4 cut(s)	77, 147, 237, 589
Tru9I	TTAA	4 cut(s)	77, 147, 237, 589
TscAI	CASTG	2 cut(s)	15, 375
TspDTI	ATGAA	4 cut(s)	47, 149, 470, 532
TspRI	CASTG	2 cut(s)	15, 375
VpaK11BI	GGWCC	2 cut(s)	37, 270
XspI	CTAG	2 cut(s)	17, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.