Rmu_co8009648.1_g000001
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8009648.1
OG0023022
Physical Location & Seq
Reverse (-)
2 .. 532
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8009648.1_g000001.1.cds

Sequence Viewer

Length: 531 bp
tcaacctgtcgtacaaccagttttccggtcaggttccggcgagcttgggccagctccagcagctgcagttcctctggctggaccacaacctcctggaagggacgctgccgtcggcgatagccaattgcgcggcgctggtgcatttcagcgtcgaagggaatgcgctcggcggcgtgattccggcggctgtcggagctctgccgaagcttcaggtgctgtcgctttcacagaataatttctctggtatggtcccatcctcgttgttttgcaatgcctcattcaatacggcgtcgcttaggattgtccagctagggtttaattcgttcacggatatagttaagcctgagacagccacatgttttagtgctctggtggttttggatcttcagcacaatcagattggcggcgattttccctggtggataataacacaggtaccaaacttgacagtgttggatgtttctagtaactcattctccggcgtggtgccgccggggattggaaacctctcgaggttacaggagcttaaga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0016020 GO:0032501 GO:0032502 GO:0044464 GO:0048731 GO:0048856 GO:0071944 GO:0090696 GO:0099402
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

176

Amino Acids

18.75

Weight (kDa)

5.04

Isoelectric Point (pI)

35.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023022)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8009648.1_g000001 Rmu_sc0035143.1_g000001 Rmu_sc0035144.1_g000001 Rmu_ssc0000160.1_g000019

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 108
Acc65I GGTACC 1 cut(s) 435
AccB1I GGYRCC 2 cut(s) 435, 486
AccII CGCG 1 cut(s) 130
AciI CCGC 5 cut(s) 130, 170, 184, 404, 490
AclWI GGATC 1 cut(s) 389
AcuI CTGAAG 2 cut(s) 193, 370
AcyI GRCGYC 1 cut(s) 289
AfaI GTAC 2 cut(s) 13, 437
AfiI CCNNNNNNNGG 2 cut(s) 78, 499
AflII CTTAAG 1 cut(s) 526
AflIII ACRYGT 1 cut(s) 355
AgsI TTSAA 1 cut(s) 282
AjnI CCWGG 2 cut(s) 92, 415
AluBI AGCT 7 cut(s) 44, 54, 63, 196, 207, 309, 525
AluI AGCT 7 cut(s) 44, 54, 63, 196, 207, 309, 525
Alw21I GWGCWC 2 cut(s) 198, 369
Alw26I GTCTC 1 cut(s) 340
AlwI GGATC 1 cut(s) 389
AlwNI CAGNNNCTG 2 cut(s) 63, 216
Ama87I CYCGRG 1 cut(s) 510
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 3 cut(s) 60, 63, 105
Asp700I GAANNNNTTC 1 cut(s) 235
Asp718I GGTACC 1 cut(s) 435
AspLEI GCGC 3 cut(s) 130, 135, 165
AspS9I GGNCC 3 cut(s) 48, 81, 249
AsuC2I CCSGG 1 cut(s) 494
AvaI CYCGRG 1 cut(s) 510
AvaII GGWCC 2 cut(s) 81, 249
BaeI ACNNNNGTAYC 2 cut(s) 419, 452
BanI GGYRCC 2 cut(s) 435, 486
BanII GRGCYC 1 cut(s) 198
Bbv12I GWGCWC 2 cut(s) 198, 369
BbvI GCAGC 3 cut(s) 50, 72, 92
BccI CCATC 1 cut(s) 261
BceAI ACGGC 2 cut(s) 93, 302
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BciT130I CCWGG 2 cut(s) 94, 417
BcnI CCSGG 1 cut(s) 494
BcoDI GTCTC 1 cut(s) 340
BfaI CTAG 2 cut(s) 310, 464
BfmI CTRYAG 1 cut(s) 64
BfoI RGCGCY 1 cut(s) 136
BfrI CTTAAG 1 cut(s) 526
BisI GCNGC 8 cut(s) 61, 64, 106, 131, 171, 185, 405, 490
BlsI GCNGC 8 cut(s) 62, 65, 107, 132, 172, 186, 406, 491
Bme1390I CCNGG 3 cut(s) 94, 417, 494
Bme18I GGWCC 2 cut(s) 81, 249
BmeT110I CYCGRG 1 cut(s) 510
BmgT120I GGNCC 3 cut(s) 48, 81, 249
BmiI GGNNCC 4 cut(s) 35, 251, 437, 488
BmrFI CCNGG 3 cut(s) 94, 417, 494
BpmI CTGGAG 1 cut(s) 40
Bpu10I CCTNAGC 1 cut(s) 295
BpuMI CCSGG 1 cut(s) 494
BsaHI GRCGYC 1 cut(s) 289
BsaJI CCNNGG 2 cut(s) 415, 493
BsaWI WCCGGW 1 cut(s) 25
BsaXI ACNNNNNCTCC 2 cut(s) 460, 490
Bsc4I CCNNNNNNNGG 2 cut(s) 78, 499
Bse1I ACTGG 1 cut(s) 18
Bse3DI GCAATG 1 cut(s) 276
BseBI CCWGG 2 cut(s) 94, 417
BseDI CCNNGG 2 cut(s) 415, 493
BseGI GGATG 2 cut(s) 253, 462
BseLI CCNNNNNNNGG 2 cut(s) 78, 499
BseMI GCAATG 1 cut(s) 276
BseMII CTCAG 1 cut(s) 335
BseNI ACTGG 1 cut(s) 18
BseXI GCAGC 3 cut(s) 50, 72, 92
Bsh1236I CGCG 1 cut(s) 130
BshFI GGCC 1 cut(s) 50
BshNI GGYRCC 2 cut(s) 435, 486
BsiHKAI GWGCWC 2 cut(s) 198, 369
BsiHKCI CYCGRG 1 cut(s) 510
BsiSI CCGG 5 cut(s) 26, 37, 181, 479, 493
BslFI GGGAC 2 cut(s) 114, 235
BslI CCNNNNNNNGG 2 cut(s) 78, 499
BsmAI GTCTC 1 cut(s) 340
BsmFI GGGAC 2 cut(s) 114, 235
BsmI GAATGC 1 cut(s) 165
BsnI GGCC 1 cut(s) 50
BsoBI CYCGRG 1 cut(s) 510
Bsp1286I GDGCHC 2 cut(s) 198, 369
Bsp143I GATC 1 cut(s) 381
BspACI CCGC 5 cut(s) 130, 170, 184, 404, 490
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 336
BspFNI CGCG 1 cut(s) 130
BspLI GGNNCC 4 cut(s) 35, 251, 437, 488
BspMAI CTGCAG 1 cut(s) 68
BspPI GGATC 1 cut(s) 389
BspT107I GGYRCC 2 cut(s) 435, 486
BspTI CTTAAG 1 cut(s) 526
BsrDI GCAATG 1 cut(s) 276
BsrI ACTGG 1 cut(s) 18
BssECI CCNNGG 2 cut(s) 415, 493
BssMI GATC 1 cut(s) 381
BssNI GRCGYC 1 cut(s) 289
Bst2UI CCWGG 2 cut(s) 94, 417
Bst4CI ACNGT 1 cut(s) 450
BstACI GRCGYC 1 cut(s) 289
BstAFI CTTAAG 1 cut(s) 526
BstC8I GCNNGC 2 cut(s) 42, 52
BstDEI CTNAG 2 cut(s) 295, 344
BstF5I GGATG 2 cut(s) 253, 462
BstFNI CGCG 1 cut(s) 130
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 3 cut(s) 130, 135, 165
BstKTI GATC 1 cut(s) 384
BstMAI GTCTC 1 cut(s) 340
BstMBI GATC 1 cut(s) 381
BstMWI GCNNNNNNNGC 4 cut(s) 60, 127, 193, 213
BstNI CCWGG 2 cut(s) 94, 417
BstNSI RCATGY 1 cut(s) 359
BstSCI CCNGG 3 cut(s) 92, 415, 492
BstSFI CTRYAG 1 cut(s) 64
BstUI CGCG 1 cut(s) 130
BstV1I GCAGC 3 cut(s) 50, 72, 92
BstX2I RGATCY 1 cut(s) 381
BstYI RGATCY 1 cut(s) 381
BsuRI GGCC 1 cut(s) 50
BtsCI GGATG 2 cut(s) 253, 462
BtsIMutI CAGTG 1 cut(s) 455
Cac8I GCNNGC 2 cut(s) 42, 52
CaiI CAGNNNCTG 2 cut(s) 63, 216
CfoI GCGC 3 cut(s) 130, 135, 165
Cfr13I GGNCC 3 cut(s) 48, 81, 249
CseI GACGC 3 cut(s) 111, 138, 278
Csp6I GTAC 2 cut(s) 12, 436
CviAII CATG 1 cut(s) 356
CviQI GTAC 2 cut(s) 12, 436
DdeI CTNAG 2 cut(s) 295, 344
DpnI GATC 1 cut(s) 383
DpnII GATC 1 cut(s) 381
DrdI GACNNNNNNGTC 1 cut(s) 108
DseDI GACNNNNNNGTC 1 cut(s) 108
Ecl136II GAGCTC 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 198
Eco47I GGWCC 2 cut(s) 81, 249
Eco53kI GAGCTC 1 cut(s) 196
Eco57I CTGAAG 2 cut(s) 193, 370
Eco88I CYCGRG 1 cut(s) 510
EcoICRI GAGCTC 1 cut(s) 196
EcoRII CCWGG 2 cut(s) 92, 415
EcoT38I GRGCYC 1 cut(s) 198
FaeI CATG 1 cut(s) 359
FaiI YATR 3 cut(s) 247, 334, 357
FaqI GGGAC 2 cut(s) 114, 235
FatI CATG 1 cut(s) 355
Fnu4HI GCNGC 8 cut(s) 61, 64, 106, 131, 171, 185, 405, 490
FokI GGATG 2 cut(s) 240, 469
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 8 cut(s) 61, 64, 106, 131, 171, 185, 405, 490
FspBI CTAG 2 cut(s) 310, 464
GlaI GCGC 3 cut(s) 129, 134, 164
GluI GCNGC 8 cut(s) 61, 64, 106, 131, 171, 185, 405, 490
GsuI CTGGAG 1 cut(s) 40
HaeII RGCGCY 1 cut(s) 136
HaeIII GGCC 1 cut(s) 50
HapII CCGG 5 cut(s) 26, 37, 181, 479, 493
HgaI GACGC 3 cut(s) 111, 138, 278
HhaI GCGC 3 cut(s) 130, 135, 165
Hin1I GRCGYC 1 cut(s) 289
Hin1II CATG 1 cut(s) 359
Hin6I GCGC 3 cut(s) 128, 133, 163
HinP1I GCGC 3 cut(s) 128, 133, 163
HindIII AAGCTT 1 cut(s) 205
HinfI GANTC 1 cut(s) 177
HpaII CCGG 5 cut(s) 26, 37, 181, 479, 493
Hpy166II GTNNAC 1 cut(s) 326
Hpy188I TCNGA 2 cut(s) 193, 398
Hpy188III TCNNGA 1 cut(s) 510
Hpy8I GTNNAC 1 cut(s) 326
Hpy99I CGWCG 3 cut(s) 114, 154, 294
HpyAV CCTTC 2 cut(s) 91, 148
HpyCH4III ACNGT 1 cut(s) 450
HpyCH4V TGCA 3 cut(s) 66, 141, 269
HpyF10VI GCNNNNNNNGC 4 cut(s) 60, 127, 193, 213
HpyF3I CTNAG 2 cut(s) 295, 344
Hsp92I GRCGYC 1 cut(s) 289
Hsp92II CATG 1 cut(s) 359
HspAI GCGC 3 cut(s) 128, 133, 163
KpnI GGTACC 1 cut(s) 439
Kzo9I GATC 1 cut(s) 381
LmnI GCTCC 3 cut(s) 59, 193, 522
Lsp1109I GCAGC 3 cut(s) 50, 72, 92
MaeI CTAG 2 cut(s) 310, 464
MaeIII GTNAC 2 cut(s) 466, 515
MalI GATC 1 cut(s) 383
MboI GATC 1 cut(s) 381
MboII GAAGA 1 cut(s) 376
MfeI CAATTG 1 cut(s) 123
MflI RGATCY 1 cut(s) 381
MhlI GDGCHC 2 cut(s) 198, 369
MluCI AATT 3 cut(s) 123, 234, 318
MmeI TCCRAC 2 cut(s) 171, 434
MnlI CCTC 6 cut(s) 82, 100, 267, 285, 506, 517
MroXI GAANNNNTTC 1 cut(s) 235
MseI TTAA 3 cut(s) 317, 338, 527
MspA1I CMGCKG 1 cut(s) 63
MspCI CTTAAG 1 cut(s) 526
MspI CCGG 5 cut(s) 26, 37, 181, 479, 493
MspR9I CCNGG 3 cut(s) 94, 417, 494
MteI GCGCNGCGC 1 cut(s) 131
MunI CAATTG 1 cut(s) 123
Mva1269I GAATGC 1 cut(s) 165
MvaI CCWGG 2 cut(s) 94, 417
MvnI CGCG 1 cut(s) 130
MwoI GCNNNNNNNGC 4 cut(s) 60, 127, 193, 213
NciI CCSGG 1 cut(s) 494
NdeII GATC 1 cut(s) 381
NlaIII CATG 1 cut(s) 359
NlaIV GGNNCC 4 cut(s) 35, 251, 437, 488
NmeAIII GCCGAG 1 cut(s) 146
NspI RCATGY 1 cut(s) 359
PaeR7I CTCGAG 1 cut(s) 510
PciI ACATGT 1 cut(s) 355
PctI GAATGC 1 cut(s) 165
PdmI GAANNNNTTC 1 cut(s) 235
PfeI GAWTC 1 cut(s) 177
PfoI TCCNGGA 1 cut(s) 92
PkrI GCNGC 8 cut(s) 62, 65, 107, 132, 172, 186, 406, 491
PscI ACATGT 1 cut(s) 355
Psp124BI GAGCTC 1 cut(s) 198
Psp6I CCWGG 2 cut(s) 92, 415
PspGI CCWGG 2 cut(s) 92, 415
PspN4I GGNNCC 4 cut(s) 35, 251, 437, 488
PspPI GGNCC 3 cut(s) 48, 81, 249
PstI CTGCAG 1 cut(s) 68
PstNI CAGNNNCTG 2 cut(s) 63, 216
PsuI RGATCY 1 cut(s) 381
PvuII CAGCTG 1 cut(s) 63
RsaI GTAC 2 cut(s) 13, 437
RsaNI GTAC 2 cut(s) 12, 436
SacI GAGCTC 1 cut(s) 198
SaqAI TTAA 3 cut(s) 317, 338, 527
SatI GCNGC 8 cut(s) 61, 64, 106, 131, 171, 185, 405, 490
Sau3AI GATC 1 cut(s) 381
Sau96I GGNCC 3 cut(s) 48, 81, 249
ScrFI CCNGG 3 cut(s) 94, 417, 494
SduI GDGCHC 2 cut(s) 198, 369
SfcI CTRYAG 1 cut(s) 64
Sfr274I CTCGAG 1 cut(s) 510
SinI GGWCC 2 cut(s) 81, 249
SlaI CTCGAG 1 cut(s) 510
SmlI CTYRAG 2 cut(s) 510, 526
SmoI CTYRAG 2 cut(s) 510, 526
Sse9I AATT 3 cut(s) 123, 234, 318
SsiI CCGC 5 cut(s) 130, 170, 184, 404, 490
SspMI CTAG 2 cut(s) 310, 464
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 3 cut(s) 92, 415, 492
TaaI ACNGT 1 cut(s) 450
TaqI TCGA 2 cut(s) 152, 511
TasI AATT 3 cut(s) 123, 234, 318
TauI GCSGC 5 cut(s) 133, 173, 187, 407, 492
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 3 cut(s) 317, 338, 527
Tru9I TTAA 3 cut(s) 317, 338, 527
TscAI CASTG 1 cut(s) 455
TseI GCWGC 3 cut(s) 60, 63, 105
TspGWI ACGGA 1 cut(s) 343
TspRI CASTG 1 cut(s) 455
Vha464I CTTAAG 1 cut(s) 526
VpaK11BI GGWCC 2 cut(s) 81, 249
XceI RCATGY 1 cut(s) 359
XhoI CTCGAG 1 cut(s) 510
XmnI GAANNNNTTC 1 cut(s) 235
XspI CTAG 2 cut(s) 310, 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.