Rmu_sc0035144.1_g000001

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035144.1
OG0023022
Physical Location & Seq
Forward (+)
1 .. 1557
1557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035144.1_g000001.1.cds

Sequence Viewer

Length: 1557 bp
gaggatagtagatctagggttcaatgcgctcacgggaattgtgcagccgcaaaatggaaggtgttcgagtattctggaggttttggttcttaaaagcaatcgcattggcggcgcgttcccaaattggttgagtaatgtgaccacgctgagggttttcgacgttgctggaaactcgttttcggggggattgccggccgaaatcggcaatcttttccggttggaagaactccgggtgggtaataattccctgagcggtgaaattcctactgagattgcaaaatgcagtttgttacaggatcttgatcttgaagggaaccgctttgagggccagtttccgttgtttctgggaggaatgaggagcttaaaggtgttgtccttgggtgggaatttaatctcgggtaccatcccgtcgagtttgggagcactgtcggggctagaatccttgaacctgagcggtaataatctgacaggggaagttccagttgagctcatgcagctaagcaacttgactagcttgaacctgagtaataacaagttttccggtgaggttcttgggaatgtaggagcattgaggagcttgcagggtttgaatttgagcaattgtgggctttcaggtagcgtccccgcgagtgttggaagtttgatgaggctcgctacactggatttgagtaaacaaaagctctctggtgagttgcctactgagatttttgggctgccaaatttacaagtggttgctttgcaagagaatcagttgtctggggctgtccctcaaggttttagtagcttgactggtttagtgtacctaaatctctcctccaatgcctttactggtgttattccagccacgtatgggtatctacggtcactaaccgttctatctttgtcaaagaatcgcatttccggtgtgatcccaccagagcttggagattgtttgaaccttcaagtacttgagcttagttctaatcaattgggggacaaaattccagttgatatctctcggctatctagtttggaagagctggatttaggtcataacaaattgacaggtgaaataccagaggaaatttccaaatgctctgctctgacttcattattgttagaggaaaatcaactttcagggccaataccaaactccttgcctttgttagtgaaccttgtggtgttagatctttcctcaaaccagttgagcggagcaatcccggcaaatatttcactcattcctcacttgaagtccttgaatttgtctaacaacaacctatctggtaagattccagagctactgggttctcaattcaatggttctgtctttgcaatgaacccgaaattatgtgggaaaccattggacagagaatgtggagatgcgaaaaggagaaggagaaacaggttgcttttattaattggggtggctgctggtggagctttgcttctgttaatgtgttgttgtggctatgtctacagcctcttccgctggcgtaagaagcttagagaaatggtaactggggagaagaagggtcccagtccaggtcgtgcaagctcaggcggagagagatctggtcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0016020 GO:0032501 GO:0032502 GO:0044464 GO:0048731 GO:0048856 GO:0071944 GO:0090696 GO:0099402
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

519

Amino Acids

54.99

Weight (kDa)

8.3

Isoelectric Point (pI)

37.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023022)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8009648.1_g000001 Rmu_sc0035143.1_g000001 Rmu_sc0035144.1_g000001 Rmu_ssc0000160.1_g000019

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 399
AccB1I GGYRCC 1 cut(s) 399
AccB7I CCANNNNNTGG 1 cut(s) 921
AccBSI CCGCTC 3 cut(s) 253, 454, 1189
AccI GTMKAC 1 cut(s) 1453
AccII CGCG 2 cut(s) 114, 627
AciI CCGC 9 cut(s) 48, 109, 253, 317, 454, 625, 1189, 1466, 1540
AclWI GGATC 2 cut(s) 304, 902
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 7 cut(s) 259, 386, 590, 719, 979, 1063, 1238
AfaI GTAC 3 cut(s) 401, 801, 946
AfiI CCNNNNNNNGG 7 cut(s) 54, 148, 323, 382, 850, 921, 1521
AjnI CCWGG 1 cut(s) 1520
Alw21I GWGCWC 2 cut(s) 425, 490
AlwI GGATC 2 cut(s) 304, 902
Ama87I CYCGRG 1 cut(s) 395
AoxI GGCC 3 cut(s) 193, 326, 1119
ApeKI GCWGC 4 cut(s) 44, 494, 713, 1407
ApoI RAATTY 7 cut(s) 259, 386, 590, 719, 979, 1063, 1238
AseI ATTAAT 1 cut(s) 1395
Asp700I GAANNNNTTC 1 cut(s) 62
Asp718I GGTACC 1 cut(s) 399
AspLEI GCGC 2 cut(s) 29, 114
AspS9I GGNCC 3 cut(s) 326, 1119, 1512
AsuC2I CCSGG 2 cut(s) 231, 1200
AsuHPI GGTGA 4 cut(s) 267, 555, 699, 1059
AvaI CYCGRG 1 cut(s) 395
AvaII GGWCC 1 cut(s) 1512
BanI GGYRCC 1 cut(s) 399
BanII GRGCYC 1 cut(s) 490
Bbv12I GWGCWC 2 cut(s) 425, 490
BbvCI CCTCAGC 1 cut(s) 147
BbvI GCAGC 4 cut(s) 56, 506, 700, 1394
BccI CCATC 1 cut(s) 411
BciT130I CCWGG 1 cut(s) 1522
BcnI CCSGG 2 cut(s) 231, 1200
BfaI CTAG 4 cut(s) 15, 435, 511, 1006
BfmI CTRYAG 1 cut(s) 1454
BglII AGATCT 3 cut(s) 11, 1166, 1548
BisI GCNGC 6 cut(s) 45, 48, 110, 495, 714, 1408
BlpI GCTNAGC 1 cut(s) 498
BlsI GCNGC 6 cut(s) 46, 49, 111, 496, 715, 1409
BmcAI AGTACT 1 cut(s) 946
Bme1390I CCNGG 3 cut(s) 231, 1200, 1522
Bme18I GGWCC 1 cut(s) 1512
BmeT110I CYCGRG 1 cut(s) 395
BmgT120I GGNCC 3 cut(s) 326, 1119, 1512
BmiI GGNNCC 4 cut(s) 315, 401, 1513, 1514
BmrFI CCNGG 3 cut(s) 231, 1200, 1522
BmrI ACTGGG 3 cut(s) 1290, 1507, 1510
BmsI GCATC 1 cut(s) 1349
BmuI ACTGGG 3 cut(s) 1290, 1507, 1510
BpmI CTGGAG 1 cut(s) 96
Bpu10I CCTNAGC 4 cut(s) 147, 249, 450, 1535
Bpu1102I GCTNAGC 1 cut(s) 498
BpuEI CTTGAG 2 cut(s) 754, 969
BpuMI CCSGG 2 cut(s) 231, 1200
BsaAI YACGTR 1 cut(s) 847
BsaBI GATNNNNATC 1 cut(s) 301
BsaJI CCNNGG 1 cut(s) 376
BsaWI WCCGGW 3 cut(s) 214, 540, 900
Bsc4I CCNNNNNNNGG 7 cut(s) 54, 148, 323, 382, 850, 921, 1521
Bse118I RCCGGY 1 cut(s) 191
Bse3DI GCAATG 1 cut(s) 1318
Bse8I GATNNNNATC 1 cut(s) 301
BseBI CCWGG 1 cut(s) 1522
BseDI CCNNGG 1 cut(s) 376
BseGI GGATG 1 cut(s) 403
BseJI GATNNNNATC 1 cut(s) 301
BseLI CCNNNNNNNGG 7 cut(s) 54, 148, 323, 382, 850, 921, 1521
BseMI GCAATG 1 cut(s) 1318
BseMII CTCAG 7 cut(s) 138, 240, 259, 441, 513, 691, 1549
BseRI GAGGAG 3 cut(s) 371, 587, 803
BseX3I CGGCCG 1 cut(s) 193
BseXI GCAGC 4 cut(s) 56, 506, 700, 1394
BsgI GTGCAG 1 cut(s) 63
Bsh1236I CGCG 2 cut(s) 114, 627
Bsh1285I CGRYCG 1 cut(s) 196
BshFI GGCC 3 cut(s) 195, 328, 1121
BshNI GGYRCC 1 cut(s) 399
BsiEI CGRYCG 1 cut(s) 196
BsiHKAI GWGCWC 2 cut(s) 425, 490
BsiHKCI CYCGRG 1 cut(s) 395
BsiSI CCGG 6 cut(s) 192, 215, 230, 541, 901, 1200
BslFI GGGAC 4 cut(s) 606, 750, 987, 1498
BslI CCNNNNNNNGG 7 cut(s) 54, 148, 323, 382, 850, 921, 1521
BsmFI GGGAC 4 cut(s) 606, 750, 987, 1498
BsnI GGCC 3 cut(s) 195, 328, 1121
BsoBI CYCGRG 1 cut(s) 395
Bsp1286I GDGCHC 2 cut(s) 425, 490
Bsp143I GATC 6 cut(s) 11, 296, 302, 907, 1166, 1548
Bsp1720I GCTNAGC 1 cut(s) 498
BspACI CCGC 9 cut(s) 48, 109, 253, 317, 454, 625, 1189, 1466, 1540
BspANI GGCC 3 cut(s) 195, 328, 1121
BspCNI CTCAG 7 cut(s) 139, 241, 260, 442, 514, 692, 1548
BspFNI CGCG 2 cut(s) 114, 627
BspLI GGNNCC 4 cut(s) 315, 401, 1513, 1514
BspPI GGATC 2 cut(s) 304, 902
BspQI GCTCTTC 1 cut(s) 1009
BspT107I GGYRCC 1 cut(s) 399
BsrBI CCGCTC 3 cut(s) 253, 454, 1189
BsrDI GCAATG 1 cut(s) 1318
BsrFI RCCGGY 1 cut(s) 191
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 376
BssMI GATC 6 cut(s) 11, 296, 302, 907, 1166, 1548
BssT1I CCWWGG 1 cut(s) 376
Bst2UI CCWGG 1 cut(s) 1522
Bst4CI ACNGT 3 cut(s) 427, 862, 872
Bst6I CTCTTC 2 cut(s) 1009, 1467
BstBAI YACGTR 1 cut(s) 847
BstC8I GCNNGC 5 cut(s) 193, 579, 652, 1470, 1532
BstF5I GGATG 1 cut(s) 403
BstFNI CGCG 2 cut(s) 114, 627
BstHHI GCGC 2 cut(s) 29, 114
BstKTI GATC 6 cut(s) 14, 299, 305, 910, 1169, 1551
BstMBI GATC 6 cut(s) 11, 296, 302, 907, 1166, 1548
BstMCI CGRYCG 1 cut(s) 196
BstMWI GCNNNNNNNGC 7 cut(s) 109, 325, 494, 1200, 1416, 1465, 1478
BstNI CCWGG 1 cut(s) 1522
BstSCI CCNGG 3 cut(s) 229, 1198, 1520
BstSFI CTRYAG 1 cut(s) 1454
BstUI CGCG 2 cut(s) 114, 627
BstV1I GCAGC 4 cut(s) 56, 506, 700, 1394
BstX2I RGATCY 4 cut(s) 11, 296, 1166, 1548
BstYI RGATCY 4 cut(s) 11, 296, 1166, 1548
BstZI CGGCCG 1 cut(s) 193
BsuRI GGCC 3 cut(s) 195, 328, 1121
BtsCI GGATG 1 cut(s) 403
BtsIMutI CAGTG 2 cut(s) 423, 657
Cac8I GCNNGC 5 cut(s) 193, 579, 652, 1470, 1532
CfoI GCGC 2 cut(s) 29, 114
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 3 cut(s) 326, 1119, 1512
CseI GACGC 1 cut(s) 608
Csp6I GTAC 3 cut(s) 400, 800, 945
CviAII CATG 1 cut(s) 491
CviQI GTAC 3 cut(s) 400, 800, 945
DpnI GATC 6 cut(s) 13, 298, 304, 909, 1168, 1550
DpnII GATC 6 cut(s) 11, 296, 302, 907, 1166, 1548
EaeI YGGCCR 1 cut(s) 193
EagI CGGCCG 1 cut(s) 193
Eam1104I CTCTTC 2 cut(s) 1009, 1467
EarI CTCTTC 2 cut(s) 1009, 1467
EciI GGCGGA 1 cut(s) 1555
Ecl136II GAGCTC 1 cut(s) 488
EclXI CGGCCG 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 376
Eco24I GRGCYC 1 cut(s) 490
Eco32I GATATC 1 cut(s) 992
Eco47I GGWCC 1 cut(s) 1512
Eco52I CGGCCG 1 cut(s) 193
Eco53kI GAGCTC 1 cut(s) 488
Eco88I CYCGRG 1 cut(s) 395
EcoICRI GAGCTC 1 cut(s) 488
EcoO109I RGGNCCY 1 cut(s) 1512
EcoRII CCWGG 1 cut(s) 1520
EcoRV GATATC 1 cut(s) 992
EcoT14I CCWWGG 1 cut(s) 376
EcoT38I GRGCYC 1 cut(s) 490
ErhI CCWWGG 1 cut(s) 376
FaeI CATG 1 cut(s) 494
FaiI YATR 5 cut(s) 492, 850, 1033, 1328, 1450
FaqI GGGAC 4 cut(s) 606, 750, 987, 1498
FatI CATG 1 cut(s) 490
FauI CCCGC 1 cut(s) 632
FblI GTMKAC 1 cut(s) 1453
Fnu4HI GCNGC 6 cut(s) 45, 48, 110, 495, 714, 1408
FokI GGATG 1 cut(s) 390
FriOI GRGCYC 1 cut(s) 490
Fsp4HI GCNGC 6 cut(s) 45, 48, 110, 495, 714, 1408
FspBI CTAG 4 cut(s) 15, 435, 511, 1006
GlaI GCGC 2 cut(s) 28, 113
GluI GCNGC 6 cut(s) 45, 48, 110, 495, 714, 1408
GsuI CTGGAG 1 cut(s) 96
HaeIII GGCC 3 cut(s) 195, 328, 1121
HapII CCGG 6 cut(s) 192, 215, 230, 541, 901, 1200
HgaI GACGC 1 cut(s) 608
HhaI GCGC 2 cut(s) 29, 114
Hin1II CATG 1 cut(s) 494
Hin6I GCGC 2 cut(s) 27, 112
HinP1I GCGC 2 cut(s) 27, 112
HindIII AAGCTT 1 cut(s) 1479
HinfI GANTC 4 cut(s) 438, 746, 890, 1268
HpaII CCGG 6 cut(s) 192, 215, 230, 541, 901, 1200
HphI GGTGA 4 cut(s) 267, 555, 699, 1059
Hpy166II GTNNAC 4 cut(s) 672, 800, 1151, 1454
Hpy188I TCNGA 2 cut(s) 466, 1084
Hpy188III TCNNGA 4 cut(s) 75, 300, 306, 1272
Hpy8I GTNNAC 4 cut(s) 672, 800, 1151, 1454
Hpy99I CGWCG 2 cut(s) 162, 413
HpyAV CCTTC 5 cut(s) 52, 303, 948, 1366, 1502
HpyCH4III ACNGT 3 cut(s) 427, 862, 872
HpyCH4IV ACGT 2 cut(s) 160, 846
HpyCH4V TGCA 8 cut(s) 44, 276, 283, 494, 581, 740, 1311, 1530
HpyF10VI GCNNNNNNNGC 7 cut(s) 109, 325, 494, 1200, 1416, 1465, 1478
HpySE526I ACGT 2 cut(s) 160, 846
Hsp92II CATG 1 cut(s) 494
HspAI GCGC 2 cut(s) 27, 112
KflI GGGWCCC 1 cut(s) 1512
KpnI GGTACC 1 cut(s) 403
KroI GCCGGC 1 cut(s) 191
KroNI GCCGGC 1 cut(s) 193
Kzo9I GATC 6 cut(s) 11, 296, 302, 907, 1166, 1548
LguI GCTCTTC 1 cut(s) 1009
LmnI GCTCC 6 cut(s) 358, 420, 564, 574, 1191, 1416
Lsp1109I GCAGC 4 cut(s) 56, 506, 700, 1394
LweI GCATC 1 cut(s) 1349
MaeI CTAG 4 cut(s) 15, 435, 511, 1006
MaeII ACGT 2 cut(s) 160, 846
MaeIII GTNAC 4 cut(s) 137, 289, 862, 1493
MalI GATC 6 cut(s) 13, 298, 304, 909, 1168, 1550
MbiI CCGCTC 3 cut(s) 253, 454, 1189
MboI GATC 6 cut(s) 11, 296, 302, 907, 1166, 1548
MboII GAAGA 4 cut(s) 234, 1026, 1454, 1517
MfeI CAATTG 2 cut(s) 599, 966
MflI RGATCY 4 cut(s) 11, 296, 1166, 1548
MhlI GDGCHC 2 cut(s) 425, 490
MmeI TCCRAC 2 cut(s) 199, 614
MroNI GCCGGC 1 cut(s) 191
MroXI GAANNNNTTC 1 cut(s) 62
MseI TTAA 5 cut(s) 91, 363, 390, 1395, 1431
MspA1I CMGCKG 1 cut(s) 1468
MspI CCGG 6 cut(s) 192, 215, 230, 541, 901, 1200
MspR9I CCNGG 3 cut(s) 231, 1200, 1522
MunI CAATTG 2 cut(s) 599, 966
MvaI CCWGG 1 cut(s) 1522
MvnI CGCG 2 cut(s) 114, 627
MwoI GCNNNNNNNGC 7 cut(s) 109, 325, 494, 1200, 1416, 1465, 1478
NaeI GCCGGC 1 cut(s) 193
NciI CCSGG 2 cut(s) 231, 1200
NdeII GATC 6 cut(s) 11, 296, 302, 907, 1166, 1548
NgoMIV GCCGGC 1 cut(s) 191
NlaIII CATG 1 cut(s) 494
NlaIV GGNNCC 4 cut(s) 315, 401, 1513, 1514
NmeAIII GCCGAG 1 cut(s) 977
NmuCI GTSAC 2 cut(s) 137, 862
PciSI GCTCTTC 1 cut(s) 1009
PdiI GCCGGC 1 cut(s) 193
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 4 cut(s) 438, 746, 890, 1268
PflMI CCANNNNNTGG 1 cut(s) 921
PkrI GCNGC 6 cut(s) 46, 49, 111, 496, 715, 1409
Ppu21I YACGTR 1 cut(s) 847
PpuMI RGGWCCY 1 cut(s) 1512
PshBI ATTAAT 1 cut(s) 1395
Psp124BI GAGCTC 1 cut(s) 490
Psp5II RGGWCCY 1 cut(s) 1512
Psp6I CCWGG 1 cut(s) 1520
PspGI CCWGG 1 cut(s) 1520
PspN4I GGNNCC 4 cut(s) 315, 401, 1513, 1514
PspPI GGNCC 3 cut(s) 326, 1119, 1512
PspPPI RGGWCCY 1 cut(s) 1512
PsuI RGATCY 4 cut(s) 11, 296, 1166, 1548
RsaI GTAC 3 cut(s) 401, 801, 946
RsaNI GTAC 3 cut(s) 400, 800, 945
SacI GAGCTC 1 cut(s) 490
SapI GCTCTTC 1 cut(s) 1009
SaqAI TTAA 5 cut(s) 91, 363, 390, 1395, 1431
SatI GCNGC 6 cut(s) 45, 48, 110, 495, 714, 1408
Sau3AI GATC 6 cut(s) 11, 296, 302, 907, 1166, 1548
Sau96I GGNCC 3 cut(s) 326, 1119, 1512
ScaI AGTACT 1 cut(s) 946
ScrFI CCNGG 3 cut(s) 231, 1200, 1522
SduI GDGCHC 2 cut(s) 425, 490
SfaNI GCATC 1 cut(s) 1349
SfcI CTRYAG 1 cut(s) 1454
SinI GGWCC 1 cut(s) 1512
SmlI CTYRAG 2 cut(s) 769, 948
SmoI CTYRAG 2 cut(s) 769, 948
SsiI CCGC 9 cut(s) 48, 109, 253, 317, 454, 625, 1189, 1466, 1540
SspI AATATT 1 cut(s) 1208
SspMI CTAG 4 cut(s) 15, 435, 511, 1006
SstI GAGCTC 1 cut(s) 490
StyD4I CCNGG 3 cut(s) 229, 1198, 1520
StyI CCWWGG 1 cut(s) 376
TaaI ACNGT 3 cut(s) 427, 862, 872
TaiI ACGT 2 cut(s) 163, 849
TaqI TCGA 3 cut(s) 66, 157, 411
TatI WGTACW 1 cut(s) 944
TauI GCSGC 2 cut(s) 50, 112
TfiI GAWTC 4 cut(s) 438, 746, 890, 1268
Tru1I TTAA 5 cut(s) 91, 363, 390, 1395, 1431
Tru9I TTAA 5 cut(s) 91, 363, 390, 1395, 1431
TscAI CASTG 2 cut(s) 430, 664
TseFI GTSAC 2 cut(s) 137, 862
TseI GCWGC 4 cut(s) 44, 494, 713, 1407
Tsp45I GTSAC 2 cut(s) 137, 862
TspDTI ATGAA 2 cut(s) 1078, 1329
TspGWI ACGGA 1 cut(s) 325
TspRI CASTG 2 cut(s) 430, 664
Van91I CCANNNNNTGG 1 cut(s) 921
VpaK11BI GGWCC 1 cut(s) 1512
VspI ATTAAT 1 cut(s) 1395
XapI RAATTY 7 cut(s) 259, 386, 590, 719, 979, 1063, 1238
XmiI GTMKAC 1 cut(s) 1453
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 4 cut(s) 15, 435, 511, 1006
ZrmI AGTACT 1 cut(s) 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.