Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8010412.1

Orthogroup ID

OG0025601

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 532

Gene Structure 532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8010412.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

acttactctctctcccccctcctcctcctcctcgtcgtcgttggagcatcgaacctttaatctcttcaccggtccgattctgtcttcctgcccgatcttcctgaaccttcatccgatgtcgttttatgagaatgagggcttatgcggcgtcgttttggagaagccgtgtgcggcgaatactgtaacggctggagctattgaggttgacggtcacgagcagctgaagaagacagctagtgcgattttgtggatcatagcggcgacgttcaggatagggctatttgtcctcgtcgtcaggacgaggtgcttccacac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010016 GO:0010065 GO:0010067 GO:0010087 GO:0010089 GO:0010154 GO:0010223 GO:0010346 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071944 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

105

Amino Acids

11.38

Weight (kDa)

7.07

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025601)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8010412.1_g000001 Rmu_sc0005928.1_g000006
rosa_samantha	Rh7CG310100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	145, 171, 258
AclWI	GGATC	1 cut(s)	258
AcuI	CTGAAG	1 cut(s)	243
AcyI	GRCGYC	1 cut(s)	148
AgeI	ACCGGT	1 cut(s)	69
AluBI	AGCT	3 cut(s)	195, 221, 234
AluI	AGCT	3 cut(s)	195, 221, 234
AlwI	GGATC	1 cut(s)	258
ApeKI	GCWGC	1 cut(s)	218
AsiGI	ACCGGT	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	72
AsuHPI	GGTGA	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	72
BauI	CACGAG	1 cut(s)	213
BbsI	GAAGAC	2 cut(s)	76, 234
BbvI	GCAGC	1 cut(s)	230
BceAI	ACGGC	2 cut(s)	149, 202
BfaI	CTAG	1 cut(s)	235
BisI	GCNGC	4 cut(s)	146, 172, 219, 259
BlsI	GCNGC	4 cut(s)	147, 173, 220, 260
Bme18I	GGWCC	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	72
BmsI	GCATC	1 cut(s)	56
BpiI	GAAGAC	2 cut(s)	76, 234
BpmI	CTGGAG	1 cut(s)	211
BsaHI	GRCGYC	1 cut(s)	148
BsaWI	WCCGGW	1 cut(s)	69
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 150, 180
Bse118I	RCCGGY	1 cut(s)	69
BseGI	GGATG	1 cut(s)	110
BseRI	GAGGAG	4 cut(s)	11, 14, 17, 20
BseXI	GCAGC	1 cut(s)	230
BshTI	ACCGGT	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	94, 250
BspACI	CCGC	3 cut(s)	145, 171, 258
BspPI	GGATC	1 cut(s)	258
BsrFI	RCCGGY	1 cut(s)	69
BssAI	RCCGGY	1 cut(s)	69
BssMI	GATC	2 cut(s)	94, 250
BssNI	GRCGYC	1 cut(s)	148
BssSI	CACGAG	1 cut(s)	213
Bst2BI	CACGAG	1 cut(s)	213
Bst4CI	ACNGT	2 cut(s)	182, 210
Bst6I	CTCTTC	1 cut(s)	69
BstACI	GRCGYC	1 cut(s)	148
BstF5I	GGATG	1 cut(s)	110
BstKTI	GATC	2 cut(s)	97, 253
BstMBI	GATC	2 cut(s)	94, 250
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstV1I	GCAGC	1 cut(s)	230
BstV2I	GAAGAC	2 cut(s)	76, 234
BtsCI	GGATG	1 cut(s)	110
Cfr10I	RCCGGY	1 cut(s)	69
Cfr13I	GGNCC	1 cut(s)	72
CpoI	CGGWCCG	1 cut(s)	72
CseI	GACGC	1 cut(s)	137
CspAI	ACCGGT	1 cut(s)	69
CspI	CGGWCCG	1 cut(s)	72
CviJI	RGCY	7 cut(s)	139, 164, 189, 195, 221, 234, 278
CviKI_1	RGCY	7 cut(s)	139, 164, 189, 195, 221, 234, 278
DpnI	GATC	2 cut(s)	96, 252
DpnII	GATC	2 cut(s)	94, 250
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	243
FaiI	YATR	3 cut(s)	127, 143, 255
Fnu4HI	GCNGC	4 cut(s)	146, 172, 219, 259
FokI	GGATG	1 cut(s)	97
Fsp4HI	GCNGC	4 cut(s)	146, 172, 219, 259
FspBI	CTAG	1 cut(s)	235
GluI	GCNGC	4 cut(s)	146, 172, 219, 259
GsuI	CTGGAG	1 cut(s)	211
HapII	CCGG	1 cut(s)	70
HgaI	GACGC	1 cut(s)	137
Hin1I	GRCGYC	1 cut(s)	148
HincII	GTYRAC	1 cut(s)	206
HindII	GTYRAC	1 cut(s)	206
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	1 cut(s)	70
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	1 cut(s)	206
Hpy188I	TCNGA	2 cut(s)	76, 115
Hpy188III	TCNNGA	4 cut(s)	101, 213, 269, 296
Hpy8I	GTNNAC	1 cut(s)	206
Hpy99I	CGWCG	5 cut(s)	38, 41, 153, 266, 294
HpyAV	CCTTC	1 cut(s)	117
HpyCH4III	ACNGT	2 cut(s)	182, 210
HpyCH4IV	ACGT	1 cut(s)	264
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpySE526I	ACGT	1 cut(s)	264
Hsp92I	GRCGYC	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	94, 250
LmnI	GCTCC	2 cut(s)	44, 192
LpnPI	CCDG	6 cut(s)	83, 101, 114, 175, 254, 281
Lsp1109I	GCAGC	1 cut(s)	230
LweI	GCATC	1 cut(s)	56
MaeI	CTAG	1 cut(s)	235
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	2 cut(s)	182, 210
MalI	GATC	2 cut(s)	96, 252
MboI	GATC	2 cut(s)	94, 250
MboII	GAAGA	5 cut(s)	56, 76, 89, 236, 239
MmeI	TCCRAC	1 cut(s)	22
MnlI	CCTC	9 cut(s)	29, 32, 35, 38, 41, 128, 194, 295, 297
MseI	TTAA	1 cut(s)	58
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	1 cut(s)	145
NdeII	GATC	2 cut(s)	94, 250
NmuCI	GTSAC	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	77
PinAI	ACCGGT	1 cut(s)	69
PkrI	GCNGC	4 cut(s)	147, 173, 220, 260
PspPI	GGNCC	1 cut(s)	72
PvuII	CAGCTG	1 cut(s)	221
Rsr2I	CGGWCCG	1 cut(s)	72
RsrII	CGGWCCG	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	58
SatI	GCNGC	4 cut(s)	146, 172, 219, 259
Sau3AI	GATC	2 cut(s)	94, 250
Sau96I	GGNCC	1 cut(s)	72
SetI	ASST	8 cut(s)	57, 109, 197, 205, 223, 236, 267, 306
SfaNI	GCATC	1 cut(s)	56
SinI	GGWCC	1 cut(s)	72
SsiI	CCGC	3 cut(s)	145, 171, 258
SspMI	CTAG	1 cut(s)	235
TaaI	ACNGT	2 cut(s)	182, 210
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	1 cut(s)	50
TauI	GCSGC	3 cut(s)	148, 174, 261
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	58
Tru9I	TTAA	1 cut(s)	58
TseFI	GTSAC	1 cut(s)	210
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	210
TspDTI	ATGAA	1 cut(s)	99
VpaK11BI	GGWCC	1 cut(s)	72
XspI	CTAG	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.