Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005928.1

Orthogroup ID

OG0025601

Physical Location & Seq

Genomic Coordinates Reverse (-)

42778 .. 43922

Gene Structure 1145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005928.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atgtcgttttatgagaatgagggcttatgcggcgtcgttttggagaagccgtgtgcggcgaatactgtaacggctggagctattgaggttgacggtcacgagcagctgaagaagacagctagtgcgattttgtggatcatagcggcgacgttcaggatagggctatttgtcctcgtcgtcaggacgagacttactctctctcccccctcctcctcctcctcctcgtcgttggagcatcgaacctttaatctcttcaccggtccgattctgtcttcctgcccgatcttcctgaaccttcatccgatgtcgttttatgagaatgagggcttatgcggcgtcgttttggagaagccgtgtgcggcgaatactgtaacggctggagctattgaggttgacggtcacgagcagctgaagaagacagctagtgcgattttgtggatcatagcggcgacgttcaggatagggctatttgtcctcgtcgtcaggacgaggtgcttccacacgagctacagccgtcgaatagaggatagcccccaaatcagaccgtggaaattgaccaccttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010016 GO:0010065 GO:0010067 GO:0010087 GO:0010089 GO:0010154 GO:0010223 GO:0010346 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071944 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

188

Amino Acids

20.65

Weight (kDa)

8.25

Isoelectric Point (pI)

50.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025601)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8010412.1_g000001 Rmu_sc0005928.1_g000006
rosa_samantha	Rh7CG310100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	30, 56, 143, 333, 359, 446
AclWI	GGATC	2 cut(s)	143, 446
AcuI	CTGAAG	2 cut(s)	128, 431
AcyI	GRCGYC	2 cut(s)	33, 336
AgeI	ACCGGT	1 cut(s)	257
AluBI	AGCT	7 cut(s)	80, 106, 119, 383, 409, 422, 507
AluI	AGCT	7 cut(s)	80, 106, 119, 383, 409, 422, 507
Alw26I	GTCTC	1 cut(s)	181
AlwI	GGATC	2 cut(s)	143, 446
ApeKI	GCWGC	2 cut(s)	103, 406
AsiGI	ACCGGT	1 cut(s)	257
AspS9I	GGNCC	1 cut(s)	260
AsuHPI	GGTGA	1 cut(s)	247
AvaII	GGWCC	1 cut(s)	260
BauI	CACGAG	3 cut(s)	98, 401, 502
BbsI	GAAGAC	3 cut(s)	119, 264, 422
BbvI	GCAGC	2 cut(s)	115, 418
BceAI	ACGGC	5 cut(s)	34, 87, 337, 390, 498
BcoDI	GTCTC	1 cut(s)	181
BfaI	CTAG	3 cut(s)	120, 423, 565
BfmI	CTRYAG	1 cut(s)	508
BisI	GCNGC	8 cut(s)	31, 57, 104, 144, 334, 360, 407, 447
BlsI	GCNGC	8 cut(s)	32, 58, 105, 145, 335, 361, 408, 448
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	260
BmsI	GCATC	1 cut(s)	244
BpiI	GAAGAC	3 cut(s)	119, 264, 422
BplI	GAGNNNNNCTC	2 cut(s)	178, 210
BpmI	CTGGAG	2 cut(s)	96, 399
BsaHI	GRCGYC	2 cut(s)	33, 336
BsaJI	CCNNGG	1 cut(s)	545
BsaWI	WCCGGW	1 cut(s)	257
BsaXI	ACNNNNNCTCC	6 cut(s)	35, 65, 184, 214, 338, 368
Bse118I	RCCGGY	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	545
BseGI	GGATG	1 cut(s)	298
BseRI	GAGGAG	5 cut(s)	199, 202, 205, 208, 211
BseXI	GCAGC	2 cut(s)	115, 418
BshTI	ACCGGT	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	258
BsmAI	GTCTC	1 cut(s)	181
Bsp143I	GATC	3 cut(s)	135, 282, 438
BspACI	CCGC	6 cut(s)	30, 56, 143, 333, 359, 446
BspPI	GGATC	2 cut(s)	143, 446
BsrFI	RCCGGY	1 cut(s)	257
BssAI	RCCGGY	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	545
BssMI	GATC	3 cut(s)	135, 282, 438
BssNI	GRCGYC	2 cut(s)	33, 336
BssSI	CACGAG	3 cut(s)	98, 401, 502
Bst2BI	CACGAG	3 cut(s)	98, 401, 502
Bst4CI	ACNGT	5 cut(s)	67, 95, 370, 398, 546
Bst6I	CTCTTC	1 cut(s)	257
BstACI	GRCGYC	2 cut(s)	33, 336
BstDSI	CCRYGG	1 cut(s)	545
BstF5I	GGATG	1 cut(s)	298
BstKTI	GATC	3 cut(s)	138, 285, 441
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	3 cut(s)	135, 282, 438
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 333
BstSFI	CTRYAG	1 cut(s)	508
BstV1I	GCAGC	2 cut(s)	115, 418
BstV2I	GAAGAC	3 cut(s)	119, 264, 422
BtgI	CCRYGG	1 cut(s)	545
BtsCI	GGATG	1 cut(s)	298
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	260
CpoI	CGGWCCG	1 cut(s)	260
CseI	GACGC	2 cut(s)	22, 325
CspAI	ACCGGT	1 cut(s)	257
CspI	CGGWCCG	1 cut(s)	260
DpnI	GATC	3 cut(s)	137, 284, 440
DpnII	GATC	3 cut(s)	135, 282, 438
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	260
Eco57I	CTGAAG	2 cut(s)	128, 431
FaiI	YATR	6 cut(s)	12, 28, 140, 315, 331, 443
Fnu4HI	GCNGC	8 cut(s)	31, 57, 104, 144, 334, 360, 407, 447
FokI	GGATG	1 cut(s)	285
Fsp4HI	GCNGC	8 cut(s)	31, 57, 104, 144, 334, 360, 407, 447
FspBI	CTAG	3 cut(s)	120, 423, 565
GluI	GCNGC	8 cut(s)	31, 57, 104, 144, 334, 360, 407, 447
GsuI	CTGGAG	2 cut(s)	96, 399
HapII	CCGG	1 cut(s)	258
HgaI	GACGC	2 cut(s)	22, 325
Hin1I	GRCGYC	2 cut(s)	33, 336
HincII	GTYRAC	2 cut(s)	91, 394
HindII	GTYRAC	2 cut(s)	91, 394
HinfI	GANTC	1 cut(s)	265
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	2 cut(s)	91, 394
Hpy188I	TCNGA	3 cut(s)	264, 303, 542
Hpy188III	TCNNGA	7 cut(s)	98, 154, 181, 289, 401, 457, 484
Hpy8I	GTNNAC	2 cut(s)	91, 394
Hpy99I	CGWCG	8 cut(s)	38, 151, 179, 229, 341, 454, 482, 519
HpyAV	CCTTC	1 cut(s)	305
HpyCH4III	ACNGT	5 cut(s)	67, 95, 370, 398, 546
HpyCH4IV	ACGT	2 cut(s)	149, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 333
HpySE526I	ACGT	2 cut(s)	149, 452
Hsp92I	GRCGYC	2 cut(s)	33, 336
Kzo9I	GATC	3 cut(s)	135, 282, 438
LmnI	GCTCC	3 cut(s)	77, 232, 380
LpnPI	CCDG	9 cut(s)	60, 139, 166, 271, 289, 302, 363, 442, 469
Lsp1109I	GCAGC	2 cut(s)	115, 418
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	3 cut(s)	120, 423, 565
MaeII	ACGT	2 cut(s)	149, 452
MaeIII	GTNAC	4 cut(s)	67, 95, 370, 398
MalI	GATC	3 cut(s)	137, 284, 440
MboI	GATC	3 cut(s)	135, 282, 438
MboII	GAAGA	7 cut(s)	121, 124, 244, 264, 277, 424, 427
MluCI	AATT	1 cut(s)	551
MmeI	TCCRAC	1 cut(s)	210
MseI	TTAA	1 cut(s)	246
MspA1I	CMGCKG	2 cut(s)	106, 409
MspI	CCGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	2 cut(s)	30, 333
NdeII	GATC	3 cut(s)	135, 282, 438
NmuCI	GTSAC	2 cut(s)	95, 398
PfeI	GAWTC	1 cut(s)	265
PinAI	ACCGGT	1 cut(s)	257
PkrI	GCNGC	8 cut(s)	32, 58, 105, 145, 335, 361, 408, 448
PspPI	GGNCC	1 cut(s)	260
PvuII	CAGCTG	2 cut(s)	106, 409
Rsr2I	CGGWCCG	1 cut(s)	260
RsrII	CGGWCCG	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	8 cut(s)	31, 57, 104, 144, 334, 360, 407, 447
Sau3AI	GATC	3 cut(s)	135, 282, 438
Sau96I	GGNCC	1 cut(s)	260
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	1 cut(s)	508
SinI	GGWCC	1 cut(s)	260
Sse9I	AATT	1 cut(s)	551
SsiI	CCGC	6 cut(s)	30, 56, 143, 333, 359, 446
SspMI	CTAG	3 cut(s)	120, 423, 565
TaaI	ACNGT	5 cut(s)	67, 95, 370, 398, 546
TaiI	ACGT	2 cut(s)	152, 455
TaqI	TCGA	2 cut(s)	238, 517
TasI	AATT	1 cut(s)	551
TauI	GCSGC	6 cut(s)	33, 59, 146, 336, 362, 449
TfiI	GAWTC	1 cut(s)	265
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TseFI	GTSAC	2 cut(s)	95, 398
TseI	GCWGC	2 cut(s)	103, 406
Tsp45I	GTSAC	2 cut(s)	95, 398
TspDTI	ATGAA	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	260
XspI	CTAG	3 cut(s)	120, 423, 565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.