Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8028648.1

Orthogroup ID

OG0031035

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 395

Gene Structure 395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8028648.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 281 bp

atgaatacgtccccaacaaaagcctcgactatattctatttgaccctgagaaacaaggacaactggattggtcgagacgttacaaaattattgcggggattgcccgaggaattatgtatctacatgaagactcccggctaagaattatacatcgcgatcttaaagccagcaatatattgttagatggggaaatgcatccaaaaatatctgattttggcatggcgaggatattcggcgttgatcaaactcaagcaaacacaaatagaattgttggaacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

92

Amino Acids

10.63

Weight (kDa)

8.35

Isoelectric Point (pI)

41.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031035)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8028648.1_g000001 Rmu_sc0000079.1_g000027

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	155
AciI	CCGC	1 cut(s)	94
Alw26I	GTCTC	1 cut(s)	69
Ama87I	CYCGRG	1 cut(s)	104
AsuC2I	CCSGG	1 cut(s)	135
AvaI	CYCGRG	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	134
BccI	CCATC	1 cut(s)	178
BclI	TGATCA	1 cut(s)	240
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	69
Bme1390I	CCNGG	1 cut(s)	135
BmeT110I	CYCGRG	1 cut(s)	104
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	204
BpiI	GAAGAC	1 cut(s)	134
BpuEI	CTTGAG	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	1 cut(s)	195
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	68
Bsh1236I	CGCG	1 cut(s)	155
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	69
BsmBI	CGTCTC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	104
Bsp143I	GATC	2 cut(s)	156, 240
Bsp68I	TCGCGA	1 cut(s)	155
BspACI	CCGC	1 cut(s)	94
BspCNI	CTCAG	1 cut(s)	39
BspFNI	CGCG	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	2 cut(s)	156, 240
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	2 cut(s)	47, 139
BstF5I	GGATG	1 cut(s)	195
BstFNI	CGCG	1 cut(s)	155
BstKTI	GATC	2 cut(s)	159, 243
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	2 cut(s)	156, 240
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	133
BstUI	CGCG	1 cut(s)	155
BstV2I	GAAGAC	1 cut(s)	134
BtgZI	GCGATG	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	195
BtuMI	TCGCGA	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	168
CviAII	CATG	2 cut(s)	124, 219
CviJI	RGCY	3 cut(s)	23, 138, 166
CviKI_1	RGCY	3 cut(s)	23, 138, 166
DdeI	CTNAG	2 cut(s)	47, 139
DpnI	GATC	2 cut(s)	158, 242
DpnII	GATC	2 cut(s)	156, 240
Eco88I	CYCGRG	1 cut(s)	104
EcoT22I	ATGCAT	1 cut(s)	197
Esp3I	CGTCTC	1 cut(s)	69
FaeI	CATG	2 cut(s)	127, 222
FaiI	YATR	7 cut(s)	32, 115, 125, 148, 175, 220, 279
FatI	CATG	2 cut(s)	123, 218
FauI	CCCGC	1 cut(s)	87
FbaI	TGATCA	1 cut(s)	240
FokI	GGATG	1 cut(s)	182
HapII	CCGG	1 cut(s)	135
Hin1II	CATG	2 cut(s)	127, 222
HinfI	GANTC	1 cut(s)	130
HpaII	CCGG	1 cut(s)	135
Hpy188I	TCNGA	1 cut(s)	210
Hpy188III	TCNNGA	2 cut(s)	74, 154
HpyCH4IV	ACGT	2 cut(s)	8, 78
HpyCH4V	TGCA	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	2 cut(s)	47, 139
HpySE526I	ACGT	2 cut(s)	8, 78
Hsp92II	CATG	2 cut(s)	127, 222
Ksp22I	TGATCA	1 cut(s)	240
Kzo9I	GATC	2 cut(s)	156, 240
LpnPI	CCDG	4 cut(s)	49, 59, 148, 180
LweI	GCATC	1 cut(s)	204
MaeII	ACGT	2 cut(s)	8, 78
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	2 cut(s)	158, 242
MboI	GATC	2 cut(s)	156, 240
MboII	GAAGA	1 cut(s)	139
MluCI	AATT	4 cut(s)	86, 110, 143, 266
MlyI	GAGTC	1 cut(s)	124
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	3 cut(s)	34, 100, 218
Mph1103I	ATGCAT	1 cut(s)	197
MseI	TTAA	1 cut(s)	161
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	135
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	100
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	2 cut(s)	156, 240
NlaIII	CATG	2 cut(s)	127, 222
NruI	TCGCGA	1 cut(s)	155
NsiI	ATGCAT	1 cut(s)	197
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
RruI	TCGCGA	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	161
Sau3AI	GATC	2 cut(s)	156, 240
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	135
SetI	ASST	2 cut(s)	11, 81
SfaNI	GCATC	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	4 cut(s)	86, 110, 143, 266
SsiI	CCGC	1 cut(s)	94
StyD4I	CCNGG	1 cut(s)	133
TaiI	ACGT	2 cut(s)	11, 81
TaqI	TCGA	2 cut(s)	26, 73
TasI	AATT	4 cut(s)	86, 110, 143, 266
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TspDTI	ATGAA	2 cut(s)	17, 140
Zsp2I	ATGCAT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.