Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000079.1

Orthogroup ID

OG0031035

Physical Location & Seq

Genomic Coordinates Reverse (-)

106574 .. 107498

Gene Structure 925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000079.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgaggttctattggttgccaagcttcaacatcgaaatcttgtcaggcttctgggattttgctcggaaggagaagagaccatacttgtctatgaatatgtacccaacaaaagtcttgatcattttctttttgcgttgcgggtgccggacgcactctctggacatcccagacagccttgatcaagcggcgaaggcgaagacgatcagaaactcgatggtgtgcagcgagctcgccggaaaccatggaagcccagaaatctgcaaccccgacctcgatttctgcccagaagagggctggggtgcctctggactccatccggccagcctcgcgccgccgacacctcctgaaagctcctgctacgttgacgtccgcactttttctgggttgcgaacgtccccttcagatccttccagagggatcgctggaggacttgtatatcttcatgaagattctaggcttagagtcattcatcgtgatttgaaagctagcaatatcctgctagatgccagtatgaatcctaaaatttcagattttgggacggcaagaatgtttggaattgatgatccaactcaaggaagcaccaaaagaattgtcggtacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

200

Amino Acids

22.17

Weight (kDa)

6.95

Isoelectric Point (pI)

50.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031035)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8028648.1_g000001 Rmu_sc0000079.1_g000027

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	369
AccB1I	GGYRCC	2 cut(s)	141, 299
AccII	CGCG	1 cut(s)	329
AciI	CCGC	4 cut(s)	138, 185, 332, 370
AclWI	GGATC	3 cut(s)	398, 425, 557
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	522
AcuI	CTGAAG	1 cut(s)	384
AcyI	GRCGYC	1 cut(s)	366
AfaI	GTAC	2 cut(s)	101, 598
AfiI	CCNNNNNNNGG	4 cut(s)	289, 290, 413, 572
AgsI	TTSAA	2 cut(s)	28, 481
AluBI	AGCT	4 cut(s)	24, 229, 351, 485
AluI	AGCT	4 cut(s)	24, 229, 351, 485
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	3 cut(s)	398, 425, 557
AoxI	GGCC	1 cut(s)	318
ApeKI	GCWGC	1 cut(s)	222
ApoI	RAATTY	1 cut(s)	522
ArsI	GACNNNNNNTTYG	1 cut(s)	576
AspLEI	GCGC	1 cut(s)	331
AsuNHI	GCTAGC	1 cut(s)	485
BanI	GGYRCC	2 cut(s)	141, 299
BanII	GRGCYC	1 cut(s)	231
BarI	GAAGNNNNNNTAC	2 cut(s)	65, 97
BbsI	GAAGAC	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	234
BccI	CCATC	2 cut(s)	208, 321
BceAI	ACGGC	1 cut(s)	555
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BclI	TGATCA	2 cut(s)	117, 178
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	3 cut(s)	453, 486, 500
BisI	GCNGC	3 cut(s)	186, 223, 332
BlsI	GCNGC	3 cut(s)	187, 224, 333
BmiI	GGNNCC	2 cut(s)	143, 301
BmsI	GCATC	1 cut(s)	493
BmtI	GCTAGC	1 cut(s)	489
BpiI	GAAGAC	1 cut(s)	203
BpmI	CTGGAG	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	555
BsaHI	GRCGYC	1 cut(s)	366
BsaI	GGTCTC	1 cut(s)	70
BsaJI	CCNNGG	1 cut(s)	241
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	4 cut(s)	289, 290, 413, 572
Bse1I	ACTGG	1 cut(s)	507
BseDI	CCNNGG	1 cut(s)	241
BseGI	GGATG	2 cut(s)	162, 313
BseLI	CCNNNNNNNGG	4 cut(s)	289, 290, 413, 572
BseNI	ACTGG	1 cut(s)	507
BseXI	GCAGC	1 cut(s)	234
BseYI	CCCAGC	1 cut(s)	294
BsgI	GTGCAG	1 cut(s)	241
Bsh1236I	CGCG	1 cut(s)	329
BshFI	GGCC	1 cut(s)	320
BshNI	GGYRCC	2 cut(s)	141, 299
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	3 cut(s)	145, 234, 317
BslFI	GGGAC	2 cut(s)	379, 550
BslI	CCNNNNNNNGG	4 cut(s)	289, 290, 413, 572
BsmAI	GTCTC	1 cut(s)	70
BsmFI	GGGAC	2 cut(s)	379, 550
BsnI	GGCC	1 cut(s)	320
Bso31I	GGTCTC	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	6 cut(s)	117, 178, 201, 403, 417, 562
Bsp19I	CCATGG	1 cut(s)	241
BspACI	CCGC	4 cut(s)	138, 185, 332, 370
BspANI	GGCC	1 cut(s)	320
BspFNI	CGCG	1 cut(s)	329
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	2 cut(s)	143, 301
BspOI	GCTAGC	1 cut(s)	489
BspPI	GGATC	3 cut(s)	398, 425, 557
BspT107I	GGYRCC	2 cut(s)	141, 299
BspTNI	GGTCTC	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	507
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	6 cut(s)	117, 178, 201, 403, 417, 562
BssNI	GRCGYC	1 cut(s)	366
BssT1I	CCWWGG	1 cut(s)	241
Bst6I	CTCTTC	2 cut(s)	68, 282
BstACI	GRCGYC	1 cut(s)	366
BstC8I	GCNNGC	4 cut(s)	227, 231, 322, 487
BstDEI	CTNAG	2 cut(s)	458, 600
BstDSI	CCRYGG	1 cut(s)	241
BstENI	CCTNNNNNAGG	1 cut(s)	411
BstF5I	GGATG	2 cut(s)	162, 313
BstFNI	CGCG	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	331
BstKTI	GATC	6 cut(s)	120, 181, 204, 406, 420, 565
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	6 cut(s)	117, 178, 201, 403, 417, 562
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 326
BstUI	CGCG	1 cut(s)	329
BstV1I	GCAGC	1 cut(s)	234
BstV2I	GAAGAC	1 cut(s)	203
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BsuRI	GGCC	1 cut(s)	320
BtgI	CCRYGG	1 cut(s)	241
BtsCI	GGATG	2 cut(s)	162, 313
Cac8I	GCNNGC	4 cut(s)	227, 231, 322, 487
CciI	TCATGA	1 cut(s)	442
CfoI	GCGC	1 cut(s)	331
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	2 cut(s)	100, 597
CviAII	CATG	2 cut(s)	242, 443
CviQI	GTAC	2 cut(s)	100, 597
DdeI	CTNAG	2 cut(s)	458, 600
DpnI	GATC	6 cut(s)	119, 180, 203, 405, 419, 564
DpnII	GATC	6 cut(s)	117, 178, 201, 403, 417, 562
EaeI	YGGCCR	1 cut(s)	318
Eam1104I	CTCTTC	2 cut(s)	68, 282
EarI	CTCTTC	2 cut(s)	68, 282
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	241
Eco24I	GRGCYC	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	70
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	384
EcoICRI	GAGCTC	1 cut(s)	229
EcoNI	CCTNNNNNAGG	1 cut(s)	411
EcoT14I	CCWWGG	1 cut(s)	241
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	2 cut(s)	245, 446
FaiI	YATR	7 cut(s)	82, 92, 98, 243, 436, 444, 512
FaqI	GGGAC	2 cut(s)	379, 550
FatI	CATG	2 cut(s)	241, 442
FauI	CCCGC	1 cut(s)	131
FbaI	TGATCA	2 cut(s)	117, 178
Fnu4HI	GCNGC	3 cut(s)	186, 223, 332
FokI	GGATG	2 cut(s)	149, 300
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	3 cut(s)	186, 223, 332
FspBI	CTAG	3 cut(s)	453, 486, 500
GlaI	GCGC	1 cut(s)	330
GluI	GCNGC	3 cut(s)	186, 223, 332
GsaI	CCCAGC	1 cut(s)	298
GsuI	CTGGAG	1 cut(s)	444
HaeIII	GGCC	1 cut(s)	320
HapII	CCGG	3 cut(s)	145, 234, 317
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	1 cut(s)	331
Hin1I	GRCGYC	1 cut(s)	366
Hin1II	CATG	2 cut(s)	245, 446
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HindIII	AAGCTT	1 cut(s)	22
HinfI	GANTC	4 cut(s)	309, 449, 462, 514
HpaII	CCGG	3 cut(s)	145, 234, 317
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	4 cut(s)	66, 206, 403, 529
Hpy188III	TCNNGA	7 cut(s)	115, 158, 306, 344, 411, 443, 473
Hpy8I	GTNNAC	1 cut(s)	364
HpyAV	CCTTC	4 cut(s)	61, 184, 408, 417
HpyCH4IV	ACGT	3 cut(s)	360, 366, 392
HpyCH4V	TGCA	2 cut(s)	222, 261
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 326
HpyF3I	CTNAG	2 cut(s)	458, 600
HpySE526I	ACGT	3 cut(s)	360, 366, 392
Hsp92I	GRCGYC	1 cut(s)	366
Hsp92II	CATG	2 cut(s)	245, 446
HspAI	GCGC	1 cut(s)	329
Ksp22I	TGATCA	2 cut(s)	117, 178
Kzo9I	GATC	6 cut(s)	117, 178, 201, 403, 417, 562
LmnI	GCTCC	1 cut(s)	356
Lsp1109I	GCAGC	1 cut(s)	234
LweI	GCATC	1 cut(s)	493
MaeI	CTAG	3 cut(s)	453, 486, 500
MaeII	ACGT	3 cut(s)	360, 366, 392
MalI	GATC	6 cut(s)	119, 180, 203, 405, 419, 564
MboI	GATC	6 cut(s)	117, 178, 201, 403, 417, 562
MboII	GAAGA	5 cut(s)	85, 208, 299, 431, 458
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	3 cut(s)	522, 555, 588
MlyI	GAGTC	2 cut(s)	303, 471
MmeI	TCCRAC	1 cut(s)	590
MnlI	CCTC	7 cut(s)	281, 283, 313, 335, 351, 407, 419
MspI	CCGG	3 cut(s)	145, 234, 317
MvnI	CGCG	1 cut(s)	329
MwoI	GCNNNNNNNGC	2 cut(s)	191, 326
NcoI	CCATGG	1 cut(s)	241
NdeII	GATC	6 cut(s)	117, 178, 201, 403, 417, 562
NheI	GCTAGC	1 cut(s)	485
NlaIII	CATG	2 cut(s)	245, 446
NlaIV	GGNNCC	2 cut(s)	143, 301
PagI	TCATGA	1 cut(s)	442
PfeI	GAWTC	2 cut(s)	449, 514
PkrI	GCNGC	3 cut(s)	187, 224, 333
PleI	GAGTC	2 cut(s)	303, 470
PpsI	GAGTC	2 cut(s)	303, 470
Psp124BI	GAGCTC	1 cut(s)	231
PspFI	CCCAGC	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	143, 301
PsuI	RGATCY	1 cut(s)	403
RsaI	GTAC	2 cut(s)	101, 598
RsaNI	GTAC	2 cut(s)	100, 597
SacI	GAGCTC	1 cut(s)	231
SatI	GCNGC	3 cut(s)	186, 223, 332
Sau3AI	GATC	6 cut(s)	117, 178, 201, 403, 417, 562
SchI	GAGTC	2 cut(s)	303, 471
SduI	GDGCHC	1 cut(s)	231
SfaNI	GCATC	1 cut(s)	493
SmlI	CTYRAG	1 cut(s)	570
SmoI	CTYRAG	1 cut(s)	570
Sse9I	AATT	3 cut(s)	522, 555, 588
SsiI	CCGC	4 cut(s)	138, 185, 332, 370
SspMI	CTAG	3 cut(s)	453, 486, 500
SstI	GAGCTC	1 cut(s)	231
StyI	CCWWGG	1 cut(s)	241
TaiI	ACGT	3 cut(s)	363, 369, 395
TaqI	TCGA	3 cut(s)	33, 212, 273
TasI	AATT	3 cut(s)	522, 555, 588
TauI	GCSGC	2 cut(s)	188, 334
TfiI	GAWTC	2 cut(s)	449, 514
TseI	GCWGC	1 cut(s)	222
TspDTI	ATGAA	5 cut(s)	107, 431, 458, 459, 527
XagI	CCTNNNNNAGG	1 cut(s)	411
XapI	RAATTY	1 cut(s)	522
XcmI	CCANNNNNNNNNTGG	1 cut(s)	291
XspI	CTAG	3 cut(s)	453, 486, 500
ZraI	GACGTC	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.