Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8065292.1

Orthogroup ID

OG0031228

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 404

Gene Structure 403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8065292.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 403 bp

atgccaaataattttccctacctacccaaaagtccgacggtaactgaaagcaagaataagagtctaattctaattcttgctatcagtctgggttccattgcattcttgtgttctgtctttgccatctcgagtttcgccatacacatgcaccgagttcataggtacaagaaactgttgaaacattcgagtttggcattagctgatcaagagtacttcactttgcaatcattttcttacgctgagctagaaagagcaacagatggcttcaaggaagagataggaaggggtactttcggagctgtttataaaggaaccctgtccgtgggcagctctaacaaaactgttgctgttaaaagactggagaaagtggttgatgaaggagtaagggaatttatagcagaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

134

Amino Acids

14.89

Weight (kDa)

9.24

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031228)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8065292.1_g000001 Rmu_sc0002831.1_g000013

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	389
AfaI	GTAC	3 cut(s)	164, 212, 289
AfiI	CCNNNNNNNGG	1 cut(s)	322
AgsI	TTSAA	2 cut(s)	178, 268
AluBI	AGCT	4 cut(s)	200, 244, 299, 330
AluI	AGCT	4 cut(s)	200, 244, 299, 330
Ama87I	CYCGRG	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	327
ApoI	RAATTY	1 cut(s)	389
AvaI	CYCGRG	1 cut(s)	127
BbvI	GCAGC	1 cut(s)	339
BccI	CCATC	2 cut(s)	131, 254
BclI	TGATCA	1 cut(s)	202
BfaI	CTAG	1 cut(s)	245
BisI	GCNGC	1 cut(s)	328
BlpI	GCTNAGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	329
BmcAI	AGTACT	1 cut(s)	212
BmeT110I	CYCGRG	1 cut(s)	127
BmiI	GGNNCC	2 cut(s)	94, 313
BpmI	CTGGAG	1 cut(s)	380
Bpu1102I	GCTNAGC	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse1I	ACTGG	1 cut(s)	363
Bse3DI	GCAATG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	321
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMI	GCAATG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	363
BseXI	GCAGC	1 cut(s)	339
BsiHKCI	CYCGRG	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmI	GAATGC	1 cut(s)	101
BsoBI	CYCGRG	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	202
Bsp1720I	GCTNAGC	1 cut(s)	240
BspCNI	CTCAG	1 cut(s)	232
BspLI	GGNNCC	2 cut(s)	94, 313
BsrDI	GCAATG	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	363
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	1 cut(s)	202
Bst4CI	ACNGT	3 cut(s)	40, 174, 343
Bst6I	CTCTTC	1 cut(s)	267
BstDEI	CTNAG	1 cut(s)	240
BstDSI	CCRYGG	1 cut(s)	321
BstKTI	GATC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	202
BstNSI	RCATGY	1 cut(s)	148
BstV1I	GCAGC	1 cut(s)	339
BtgI	CCRYGG	1 cut(s)	321
Csp6I	GTAC	3 cut(s)	163, 211, 288
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	5 cut(s)	200, 244, 264, 299, 330
CviKI_1	RGCY	5 cut(s)	200, 244, 264, 299, 330
CviQI	GTAC	3 cut(s)	163, 211, 288
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco88I	CYCGRG	1 cut(s)	127
FaeI	CATG	1 cut(s)	148
FaiI	YATR	5 cut(s)	140, 146, 159, 306, 395
FalI	AAGNNNNNCTT	2 cut(s)	274, 306
FatI	CATG	1 cut(s)	144
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	1 cut(s)	328
Fsp4HI	GCNGC	1 cut(s)	328
FspBI	CTAG	1 cut(s)	245
GluI	GCNGC	1 cut(s)	328
GsuI	CTGGAG	1 cut(s)	380
Hin1II	CATG	1 cut(s)	148
HinfI	GANTC	1 cut(s)	61
Hpy188I	TCNGA	2 cut(s)	36, 296
Hpy188III	TCNNGA	2 cut(s)	127, 206
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	276, 371
HpyCH4III	ACNGT	3 cut(s)	40, 174, 343
HpyCH4V	TGCA	3 cut(s)	101, 148, 223
HpyF3I	CTNAG	1 cut(s)	240
Hsp92II	CATG	1 cut(s)	148
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	202
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	3 cut(s)	74, 329, 344
Lsp1109I	GCAGC	1 cut(s)	339
MaeI	CTAG	1 cut(s)	245
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	1 cut(s)	284
MluCI	AATT	4 cut(s)	10, 66, 72, 389
MlyI	GAGTC	1 cut(s)	70
MmeI	TCCRAC	1 cut(s)	59
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	2 cut(s)	106, 143
Mva1269I	GAATGC	1 cut(s)	101
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	2 cut(s)	94, 313
NspI	RCATGY	1 cut(s)	148
PaeR7I	CTCGAG	1 cut(s)	127
PctI	GAATGC	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	329
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
PsiI	TTATAA	1 cut(s)	306
PspN4I	GGNNCC	2 cut(s)	94, 313
RsaI	GTAC	3 cut(s)	164, 212, 289
RsaNI	GTAC	3 cut(s)	163, 211, 288
RseI	CAYNNNNRTG	2 cut(s)	106, 143
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	1 cut(s)	328
Sau3AI	GATC	1 cut(s)	202
ScaI	AGTACT	1 cut(s)	212
SchI	GAGTC	1 cut(s)	70
SetI	ASST	6 cut(s)	24, 164, 202, 246, 301, 332
Sfr274I	CTCGAG	1 cut(s)	127
SlaI	CTCGAG	1 cut(s)	127
SmiMI	CAYNNNNRTG	2 cut(s)	106, 143
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	4 cut(s)	10, 66, 72, 389
SspMI	CTAG	1 cut(s)	245
TaaI	ACNGT	3 cut(s)	40, 174, 343
TaqI	TCGA	2 cut(s)	128, 185
TasI	AATT	4 cut(s)	10, 66, 72, 389
TatI	WGTACW	1 cut(s)	210
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TseI	GCWGC	1 cut(s)	327
TspDTI	ATGAA	2 cut(s)	146, 390
TspGWI	ACGGA	1 cut(s)	310
XapI	RAATTY	1 cut(s)	389
XceI	RCATGY	1 cut(s)	148
XhoI	CTCGAG	1 cut(s)	127
XspI	CTAG	1 cut(s)	245
ZrmI	AGTACT	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.