Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002831.1

Orthogroup ID

OG0031228

Physical Location & Seq

Genomic Coordinates Forward (+)

50662 .. 51171

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002831.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgcaccgagttcataggtacaagaagctgttgaaacattcgagtttggcattagctgatcaagagtacttcactttacaatcgttttcttatgctgagctcgaaagagcaacagatggcttcaaggaagagataggaaggggtactttcggagctgtttataaaggaactctatccgggggcagctctaacaaaactgttgctgttaaaagactggagaaagtggttgatgaaggagtaagggaatttatagcagaaatgaccaccattggacgaactcaccacagaaacttaattcagttgcttggtttctgtactgagggttctcggaagcttcttgtttatgaatacatgagcaacggctcacttgcggatcttatctttaaggctaaaagtgttcactcatcttggaaagaaagggtaagacttgtatttgatgtggctaaaggggtcctctatttacatgatgagtgcagtgtccatatcattcactccaatttgaaaccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

169

Amino Acids

19.18

Weight (kDa)

9.32

Isoelectric Point (pI)

35.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031228)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8065292.1_g000001 Rmu_sc0002831.1_g000013

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	162
AciI	CCGC	1 cut(s)	371
AclWI	GGATC	1 cut(s)	381
AcsI	RAATTY	1 cut(s)	245
AfaI	GTAC	4 cut(s)	20, 68, 145, 316
AgsI	TTSAA	3 cut(s)	34, 124, 502
AluBI	AGCT	6 cut(s)	28, 56, 100, 155, 186, 334
AluI	AGCT	6 cut(s)	28, 56, 100, 155, 186, 334
Alw21I	GWGCWC	1 cut(s)	102
AlwI	GGATC	1 cut(s)	381
ApeKI	GCWGC	1 cut(s)	183
ApoI	RAATTY	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	451
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	451
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	195
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	1 cut(s)	376
BclI	TGATCA	1 cut(s)	58
BcnI	CCSGG	1 cut(s)	178
BisI	GCNGC	1 cut(s)	184
BlpI	GCTNAGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	185
BmcAI	AGTACT	1 cut(s)	68
Bme1390I	CCNGG	1 cut(s)	178
Bme18I	GGWCC	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	1 cut(s)	452
BmrFI	CCNGG	1 cut(s)	178
BpmI	CTGGAG	1 cut(s)	236
Bpu1102I	GCTNAGC	1 cut(s)	96
BpuMI	CCSGG	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	177
Bse1I	ACTGG	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	177
BseMII	CTCAG	2 cut(s)	87, 309
BseNI	ACTGG	1 cut(s)	219
BseXI	GCAGC	1 cut(s)	195
BsgI	GTGCAG	1 cut(s)	493
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	2 cut(s)	58, 373
Bsp1720I	GCTNAGC	1 cut(s)	96
BspACI	CCGC	1 cut(s)	371
BspCNI	CTCAG	2 cut(s)	88, 310
BspLI	GGNNCC	1 cut(s)	452
BspPI	GGATC	1 cut(s)	381
BsrI	ACTGG	1 cut(s)	219
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	2 cut(s)	58, 373
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	123
BstDEI	CTNAG	2 cut(s)	96, 318
BstKTI	GATC	2 cut(s)	61, 376
BstMBI	GATC	2 cut(s)	58, 373
BstSCI	CCNGG	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BtsI	GCAGTG	1 cut(s)	481
BtsIMutI	CAGTG	1 cut(s)	481
Cfr13I	GGNCC	1 cut(s)	451
Csp6I	GTAC	4 cut(s)	19, 67, 144, 315
CviAII	CATG	2 cut(s)	352, 464
CviQI	GTAC	4 cut(s)	19, 67, 144, 315
DdeI	CTNAG	2 cut(s)	96, 318
DpnI	GATC	2 cut(s)	60, 375
DpnII	GATC	2 cut(s)	58, 373
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Ecl136II	GAGCTC	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	451
Eco53kI	GAGCTC	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	100
EcoO109I	RGGNCCY	1 cut(s)	451
EcoT38I	GRGCYC	1 cut(s)	102
FaeI	CATG	2 cut(s)	355, 467
FaiI	YATR	8 cut(s)	15, 93, 162, 251, 345, 353, 465, 483
FalI	AAGNNNNNCTT	2 cut(s)	130, 162
FatI	CATG	2 cut(s)	351, 463
FbaI	TGATCA	1 cut(s)	58
Fnu4HI	GCNGC	1 cut(s)	184
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	184
GluI	GCNGC	1 cut(s)	184
GsuI	CTGGAG	1 cut(s)	236
HapII	CCGG	1 cut(s)	177
Hin1II	CATG	2 cut(s)	355, 467
HindIII	AAGCTT	1 cut(s)	332
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	2 cut(s)	152, 330
Hpy188III	TCNNGA	1 cut(s)	62
Hpy8I	GTNNAC	1 cut(s)	400
HpyAV	CCTTC	2 cut(s)	132, 227
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	2 cut(s)	4, 474
HpyF3I	CTNAG	2 cut(s)	96, 318
Hsp92II	CATG	2 cut(s)	355, 467
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	2 cut(s)	58, 373
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	2 cut(s)	190, 200
Lsp1109I	GCAGC	1 cut(s)	195
MalI	GATC	2 cut(s)	60, 375
MboI	GATC	2 cut(s)	58, 373
MboII	GAAGA	1 cut(s)	140
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	3 cut(s)	245, 294, 496
MnlI	CCTC	2 cut(s)	313, 464
MseI	TTAA	3 cut(s)	207, 293, 384
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	178
NciI	CCSGG	1 cut(s)	178
NdeII	GATC	2 cut(s)	58, 373
NlaIII	CATG	2 cut(s)	355, 467
NlaIV	GGNNCC	1 cut(s)	452
PkrI	GCNGC	1 cut(s)	185
PpuMI	RGGWCCY	1 cut(s)	451
PsiI	TTATAA	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	451
PspN4I	GGNNCC	1 cut(s)	452
PspPI	GGNCC	1 cut(s)	451
PspPPI	RGGWCCY	1 cut(s)	451
PsrI	GAACNNNNNNTAC	2 cut(s)	307, 339
PsuI	RGATCY	1 cut(s)	373
RsaI	GTAC	4 cut(s)	20, 68, 145, 316
RsaNI	GTAC	4 cut(s)	19, 67, 144, 315
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	3 cut(s)	207, 293, 384
SatI	GCNGC	1 cut(s)	184
Sau3AI	GATC	2 cut(s)	58, 373
Sau96I	GGNCC	1 cut(s)	451
ScaI	AGTACT	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	178
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	7 cut(s)	20, 30, 58, 102, 157, 188, 336
SinI	GGWCC	1 cut(s)	451
Sse9I	AATT	3 cut(s)	245, 294, 496
SsiI	CCGC	1 cut(s)	371
SstI	GAGCTC	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	176
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	2 cut(s)	41, 102
TasI	AATT	3 cut(s)	245, 294, 496
TatI	WGTACW	2 cut(s)	66, 314
Tru1I	TTAA	3 cut(s)	207, 293, 384
Tru9I	TTAA	3 cut(s)	207, 293, 384
TscAI	CASTG	1 cut(s)	481
TseI	GCWGC	1 cut(s)	183
TspDTI	ATGAA	2 cut(s)	246, 360
TspRI	CASTG	1 cut(s)	481
VpaK11BI	GGWCC	1 cut(s)	451
XapI	RAATTY	1 cut(s)	245
ZrmI	AGTACT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.