Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8085960.1

Orthogroup ID

OG0024554

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 588

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8085960.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

tgtacaagaagcatcatccaccaatgttggaagacgaagtttggcggctggagaagattgggaaagatggagcttttcacaggaagttagctgctgacaacattcatacagttcaagacttcttgaagatgttggtcgtcgaccgatcgaagcttaaacagatattagggattggaatgtcagaaaagatgtgggaagtaacagtgaagcatgcaagaacatgcgtgatgggtaacaaaatgtacattttccggggtcctcatttcgagctcctcttatctccaatatgtcaagtgataaaggctgtgatcaatgggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002237 GO:0002239 GO:0002682 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009889 GO:0009987 GO:0010033 GO:0010112 GO:0010224 GO:0010337 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032350 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0043902 GO:0044424 GO:0044464 GO:0045088 GO:0046885 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071216 GO:0071219 GO:0080090 GO:0080134 GO:0080142 GO:0097159 GO:0098542 GO:0140110 GO:1900424 GO:1900426 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Calmodulin_bind

Protein Analysis

105

Amino Acids

12.15

Weight (kDa)

9.52

Isoelectric Point (pI)

33.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024554)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G223700_v2.0.a1
rosa_multiflora	Rmu_co8085960.1_g000001 Rmu_sc0031403.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	140
AciI	CCGC	1 cut(s)	45
AfaI	GTAC	2 cut(s)	4, 244
AgsI	TTSAA	2 cut(s)	115, 126
AluBI	AGCT	4 cut(s)	73, 91, 153, 270
AluI	AGCT	4 cut(s)	73, 91, 153, 270
Alw21I	GWGCWC	1 cut(s)	272
ApeKI	GCWGC	1 cut(s)	91
AspS9I	GGNCC	1 cut(s)	256
AsuC2I	CCSGG	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	256
BanII	GRGCYC	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	78
BccI	CCATC	2 cut(s)	61, 222
BclI	TGATCA	1 cut(s)	308
BcnI	CCSGG	1 cut(s)	253
BisI	GCNGC	2 cut(s)	46, 92
BlsI	GCNGC	2 cut(s)	47, 93
Bme1390I	CCNGG	1 cut(s)	253
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	257
BmrFI	CCNGG	1 cut(s)	253
BmsI	GCATC	1 cut(s)	21
BpiI	GAAGAC	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	70
BpuMI	CCSGG	1 cut(s)	253
BsaJI	CCNNGG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	1 cut(s)	15
BseRI	GAGGAG	1 cut(s)	262
BseXI	GCAGC	1 cut(s)	78
Bsh1285I	CGRYCG	2 cut(s)	144, 148
BsiEI	CGRYCG	2 cut(s)	144, 148
BsiHKAI	GWGCWC	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp1407I	TGTACA	2 cut(s)	2, 242
Bsp143I	GATC	2 cut(s)	145, 308
BspACI	CCGC	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	257
BsrGI	TGTACA	2 cut(s)	2, 242
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	2 cut(s)	145, 308
Bst4CI	ACNGT	2 cut(s)	111, 204
BstAUI	TGTACA	2 cut(s)	2, 242
BstC8I	GCNNGC	1 cut(s)	212
BstF5I	GGATG	1 cut(s)	15
BstKTI	GATC	2 cut(s)	148, 311
BstMBI	GATC	2 cut(s)	145, 308
BstMCI	CGRYCG	2 cut(s)	144, 148
BstNSI	RCATGY	2 cut(s)	214, 224
BstSCI	CCNGG	1 cut(s)	251
BstV1I	GCAGC	1 cut(s)	78
BstV2I	GAAGAC	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	15
BtsIMutI	CAGTG	1 cut(s)	209
Cac8I	GCNNGC	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	256
Csp6I	GTAC	2 cut(s)	3, 243
CspCI	CAANNNNNGTGG	2 cut(s)	8, 43
CviAII	CATG	2 cut(s)	211, 221
CviJI	RGCY	6 cut(s)	48, 73, 91, 153, 270, 304
CviKI_1	RGCY	6 cut(s)	48, 73, 91, 153, 270, 304
CviQI	GTAC	2 cut(s)	3, 243
DpnI	GATC	2 cut(s)	147, 310
DpnII	GATC	2 cut(s)	145, 308
Ecl136II	GAGCTC	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	256
Eco53kI	GAGCTC	1 cut(s)	270
EcoICRI	GAGCTC	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	272
FaeI	CATG	2 cut(s)	214, 224
FaiI	YATR	4 cut(s)	107, 212, 222, 288
FatI	CATG	2 cut(s)	210, 220
FbaI	TGATCA	1 cut(s)	308
FblI	GTMKAC	1 cut(s)	140
Fnu4HI	GCNGC	2 cut(s)	46, 92
FokI	GGATG	1 cut(s)	2
FriOI	GRGCYC	1 cut(s)	272
Fsp4HI	GCNGC	2 cut(s)	46, 92
GluI	GCNGC	2 cut(s)	46, 92
GsuI	CTGGAG	1 cut(s)	70
HapII	CCGG	1 cut(s)	252
Hin1II	CATG	2 cut(s)	214, 224
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HindIII	AAGCTT	1 cut(s)	151
HpaII	CCGG	1 cut(s)	252
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	1 cut(s)	183
Hpy188III	TCNNGA	2 cut(s)	115, 123
Hpy8I	GTNNAC	1 cut(s)	141
Hpy99I	CGWCG	1 cut(s)	142
HpyCH4III	ACNGT	2 cut(s)	111, 204
HpyCH4V	TGCA	1 cut(s)	214
Hsp92II	CATG	2 cut(s)	214, 224
Ksp22I	TGATCA	1 cut(s)	308
Kzo9I	GATC	2 cut(s)	145, 308
LmnI	GCTCC	2 cut(s)	70, 275
LpnPI	CCDG	3 cut(s)	34, 66, 265
Lsp1109I	GCAGC	1 cut(s)	78
LweI	GCATC	1 cut(s)	21
MaeIII	GTNAC	2 cut(s)	198, 232
MalI	GATC	2 cut(s)	147, 310
MboI	GATC	2 cut(s)	145, 308
MboII	GAAGA	3 cut(s)	43, 66, 138
MhlI	GDGCHC	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	8
MnlI	CCTC	2 cut(s)	269, 283
MseI	TTAA	1 cut(s)	155
MspI	CCGG	1 cut(s)	252
MspR9I	CCNGG	1 cut(s)	253
NciI	CCSGG	1 cut(s)	253
NdeII	GATC	2 cut(s)	145, 308
NlaIII	CATG	2 cut(s)	214, 224
NlaIV	GGNNCC	1 cut(s)	257
NspI	RCATGY	2 cut(s)	214, 224
PaeI	GCATGC	1 cut(s)	214
PkrI	GCNGC	2 cut(s)	47, 93
Ple19I	CGATCG	1 cut(s)	148
PpuMI	RGGWCCY	1 cut(s)	256
Psp124BI	GAGCTC	1 cut(s)	272
Psp5II	RGGWCCY	1 cut(s)	256
PspN4I	GGNNCC	1 cut(s)	257
PspPI	GGNCC	1 cut(s)	256
PspPPI	RGGWCCY	1 cut(s)	256
PvuI	CGATCG	1 cut(s)	148
RsaI	GTAC	2 cut(s)	4, 244
RsaNI	GTAC	2 cut(s)	3, 243
SacI	GAGCTC	1 cut(s)	272
SalI	GTCGAC	1 cut(s)	139
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	2 cut(s)	46, 92
Sau3AI	GATC	2 cut(s)	145, 308
Sau96I	GGNCC	1 cut(s)	256
ScrFI	CCNGG	1 cut(s)	253
SduI	GDGCHC	1 cut(s)	272
SetI	ASST	4 cut(s)	75, 93, 155, 272
SfaNI	GCATC	1 cut(s)	21
SinI	GGWCC	1 cut(s)	256
SphI	GCATGC	1 cut(s)	214
SsiI	CCGC	1 cut(s)	45
SstI	GAGCTC	1 cut(s)	272
StyD4I	CCNGG	1 cut(s)	251
TaaI	ACNGT	2 cut(s)	111, 204
TaqI	TCGA	3 cut(s)	140, 148, 266
TaqII	GACCGA	1 cut(s)	158
TatI	WGTACW	2 cut(s)	2, 242
TauI	GCSGC	1 cut(s)	48
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TscAI	CASTG	1 cut(s)	209
TseI	GCWGC	1 cut(s)	91
TspDTI	ATGAA	1 cut(s)	94
TspRI	CASTG	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	256
XceI	RCATGY	2 cut(s)	214, 224
XmiI	GTMKAC	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.