Rmu_co8100954.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8100954.1
OG0031327
Physical Location & Seq
Forward (+)
1 .. 601
601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8100954.1_g000001.1.cds

Sequence Viewer

Length: 601 bp
ggggcggggaaaccgaggaggctgtgaaattcttgggagtgatgaacaagaatggatgcttgccaggtttgaaattcttttccaatgctattgatattcttgttaaggaaaagggcgccgagaatgccgtattggtttgggatattatggttggtaatggcctgcttcctaaattgtcgatgtataattcgatgatcggattgatgtgcgattgtaatgaggtggatcatgcgtttcggctgcttgatgagatggtgttcaacggtgctttccctgattgttttacttataatgctatattcaagtgtttgattaagaacaacaacgttcgcgaggcggggaagttctttgtggagatggtgaagaatgagtgcctgccgacgcatttcaactttgctgcggccatcaccatgtttttcgatggggatgacccggaaatgggggttgagatttggaactttatggttgaaaaccgtgtggagcctcttgatgttgctgccaatgcgttgcttttgggtctttgtaagttggataggttgtcggagttgaggaggagtgctgatgatatgctcgatagaaggatcagcatttatgaatcgac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

200

Amino Acids

22.47

Weight (kDa)

4.65

Isoelectric Point (pI)

28.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031327)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8100954.1_g000001 Rmu_sc0004935.1_g000004

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 290
AccB1I GGYRCC 1 cut(s) 115
AccII CGCG 1 cut(s) 332
AciI CCGC 3 cut(s) 5, 337, 400
AclI AACGTT 1 cut(s) 326
AclWI GGATC 2 cut(s) 233, 589
AcoI YGGCCR 1 cut(s) 401
AcsI RAATTY 2 cut(s) 28, 73
AcyI GRCGYC 1 cut(s) 116
AfiI CCNNNNNNNGG 2 cut(s) 438, 439
AgsI TTSAA 5 cut(s) 72, 261, 303, 390, 469
AjnI CCWGG 1 cut(s) 63
AjuI GAANNNNNNNTTGG 2 cut(s) 115, 147
AlwI GGATC 2 cut(s) 233, 589
AoxI GGCC 2 cut(s) 159, 401
ApeKI GCWGC 3 cut(s) 240, 397, 496
ApoI RAATTY 2 cut(s) 28, 73
AspLEI GCGC 1 cut(s) 118
AsuC2I CCSGG 1 cut(s) 433
AsuHPI GGTGA 2 cut(s) 372, 399
BanI GGYRCC 1 cut(s) 115
BbvI GCAGC 3 cut(s) 227, 384, 483
BccI CCATC 4 cut(s) 246, 351, 412, 415
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 65
BcnI CCSGG 1 cut(s) 433
BfoI RGCGCY 1 cut(s) 119
BisI GCNGC 4 cut(s) 241, 398, 401, 497
BlsI GCNGC 4 cut(s) 242, 399, 402, 498
Bme1390I CCNGG 2 cut(s) 65, 433
BmiI GGNNCC 2 cut(s) 117, 482
BmrFI CCNGG 2 cut(s) 65, 433
BmsI GCATC 1 cut(s) 46
BpuMI CCSGG 1 cut(s) 433
BsaHI GRCGYC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 14
Bsc4I CCNNNNNNNGG 2 cut(s) 438, 439
BseBI CCWGG 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 14
BseGI GGATG 2 cut(s) 61, 432
BseLI CCNNNNNNNGG 2 cut(s) 438, 439
BseRI GAGGAG 3 cut(s) 31, 564, 567
BseXI GCAGC 3 cut(s) 227, 384, 483
Bsh1236I CGCG 1 cut(s) 332
BshFI GGCC 2 cut(s) 161, 403
BshNI GGYRCC 1 cut(s) 115
BsiSI CCGG 1 cut(s) 433
BslI CCNNNNNNNGG 2 cut(s) 438, 439
BsmI GAATGC 1 cut(s) 129
BsnI GGCC 2 cut(s) 161, 403
Bsp143I GATC 3 cut(s) 194, 225, 581
Bsp68I TCGCGA 1 cut(s) 332
BspACI CCGC 3 cut(s) 5, 337, 400
BspANI GGCC 2 cut(s) 161, 403
BspFNI CGCG 1 cut(s) 332
BspLI GGNNCC 2 cut(s) 117, 482
BspPI GGATC 2 cut(s) 233, 589
BspT107I GGYRCC 1 cut(s) 115
BssECI CCNNGG 1 cut(s) 14
BssMI GATC 3 cut(s) 194, 225, 581
BssNI GRCGYC 1 cut(s) 116
Bst2UI CCWGG 1 cut(s) 65
Bst4CI ACNGT 2 cut(s) 265, 475
BstACI GRCGYC 1 cut(s) 116
BstC8I GCNNGC 3 cut(s) 61, 163, 376
BstF5I GGATG 2 cut(s) 61, 432
BstFNI CGCG 1 cut(s) 332
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 3 cut(s) 197, 228, 584
BstMBI GATC 3 cut(s) 194, 225, 581
BstMWI GCNNNNNNNGC 2 cut(s) 124, 502
BstNI CCWGG 1 cut(s) 65
BstSCI CCNGG 2 cut(s) 63, 431
BstUI CGCG 1 cut(s) 332
BstV1I GCAGC 3 cut(s) 227, 384, 483
BsuRI GGCC 2 cut(s) 161, 403
BtsCI GGATG 2 cut(s) 61, 432
BtuMI TCGCGA 1 cut(s) 332
Cac8I GCNNGC 3 cut(s) 61, 163, 376
CfoI GCGC 1 cut(s) 118
CseI GACGC 1 cut(s) 390
CviAII CATG 2 cut(s) 229, 411
CviJI RGCY 5 cut(s) 22, 161, 240, 403, 483
CviKI_1 RGCY 5 cut(s) 22, 161, 240, 403, 483
DinI GGCGCC 1 cut(s) 117
DpnI GATC 3 cut(s) 196, 227, 583
DpnII GATC 3 cut(s) 194, 225, 581
EaeI YGGCCR 1 cut(s) 401
EcoRII CCWGG 1 cut(s) 63
EgeI GGCGCC 1 cut(s) 117
EheI GGCGCC 1 cut(s) 117
FaeI CATG 2 cut(s) 232, 414
FaiI YATR 9 cut(s) 148, 185, 230, 290, 298, 412, 463, 568, 593
FatI CATG 2 cut(s) 228, 410
FauI CCCGC 1 cut(s) 330
Fnu4HI GCNGC 4 cut(s) 241, 398, 401, 497
FokI GGATG 2 cut(s) 68, 439
Fsp4HI GCNGC 4 cut(s) 241, 398, 401, 497
GlaI GCGC 1 cut(s) 117
GluI GCNGC 4 cut(s) 241, 398, 401, 497
HaeII RGCGCY 1 cut(s) 119
HaeIII GGCC 2 cut(s) 161, 403
HapII CCGG 1 cut(s) 433
HgaI GACGC 1 cut(s) 390
HhaI GCGC 1 cut(s) 118
Hin1I GRCGYC 1 cut(s) 116
Hin1II CATG 2 cut(s) 232, 414
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HinfI GANTC 1 cut(s) 595
HpaII CCGG 1 cut(s) 433
HphI GGTGA 2 cut(s) 372, 399
Hpy188I TCNGA 2 cut(s) 199, 543
Hpy188III TCNNGA 2 cut(s) 331, 487
Hpy99I CGWCG 1 cut(s) 384
HpyAV CCTTC 1 cut(s) 572
HpyCH4III ACNGT 2 cut(s) 265, 475
HpyCH4IV ACGT 1 cut(s) 326
HpyF10VI GCNNNNNNNGC 2 cut(s) 124, 502
HpySE526I ACGT 1 cut(s) 326
Hsp92I GRCGYC 1 cut(s) 116
Hsp92II CATG 2 cut(s) 232, 414
HspAI GCGC 1 cut(s) 116
KasI GGCGCC 1 cut(s) 115
Kzo9I GATC 3 cut(s) 194, 225, 581
LmnI GCTCC 1 cut(s) 480
LpnPI CCDG 6 cut(s) 50, 77, 175, 287, 388, 446
Lsp1109I GCAGC 3 cut(s) 227, 384, 483
LweI GCATC 1 cut(s) 46
MaeII ACGT 1 cut(s) 326
MalI GATC 3 cut(s) 196, 227, 583
MboI GATC 3 cut(s) 194, 225, 581
MboII GAAGA 1 cut(s) 375
MluCI AATT 4 cut(s) 28, 73, 172, 186
Mly113I GGCGCC 1 cut(s) 116
MmeI TCCRAC 2 cut(s) 509, 521
MnlI CCTC 7 cut(s) 9, 12, 213, 327, 494, 542, 545
MseI TTAA 2 cut(s) 104, 314
MslI CAYNNNNRTG 1 cut(s) 409
MspI CCGG 1 cut(s) 433
MspR9I CCNGG 2 cut(s) 65, 433
Mva1269I GAATGC 1 cut(s) 129
MvaI CCWGG 1 cut(s) 65
MvnI CGCG 1 cut(s) 332
MwoI GCNNNNNNNGC 2 cut(s) 124, 502
NarI GGCGCC 1 cut(s) 116
NciI CCSGG 1 cut(s) 433
NdeII GATC 3 cut(s) 194, 225, 581
NlaIII CATG 2 cut(s) 232, 414
NlaIV GGNNCC 2 cut(s) 117, 482
NmeAIII GCCGAG 1 cut(s) 144
NruI TCGCGA 1 cut(s) 332
PctI GAATGC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 595
PkrI GCNGC 4 cut(s) 242, 399, 402, 498
PluTI GGCGCC 1 cut(s) 119
PsiI TTATAA 1 cut(s) 290
Psp1406I AACGTT 1 cut(s) 326
Psp6I CCWGG 1 cut(s) 63
PspGI CCWGG 1 cut(s) 63
PspN4I GGNNCC 2 cut(s) 117, 482
RruI TCGCGA 1 cut(s) 332
RseI CAYNNNNRTG 1 cut(s) 409
SaqAI TTAA 2 cut(s) 104, 314
SatI GCNGC 4 cut(s) 241, 398, 401, 497
Sau3AI GATC 3 cut(s) 194, 225, 581
ScrFI CCNGG 2 cut(s) 65, 433
SetI ASST 4 cut(s) 69, 224, 329, 538
SfaNI GCATC 1 cut(s) 46
SfoI GGCGCC 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 409
Sse9I AATT 4 cut(s) 28, 73, 172, 186
SsiI CCGC 3 cut(s) 5, 337, 400
SspDI GGCGCC 1 cut(s) 115
StyD4I CCNGG 2 cut(s) 63, 431
TaaI ACNGT 2 cut(s) 265, 475
TaiI ACGT 1 cut(s) 329
TaqI TCGA 5 cut(s) 178, 190, 419, 572, 598
TasI AATT 4 cut(s) 28, 73, 172, 186
TauI GCSGC 1 cut(s) 403
TfiI GAWTC 1 cut(s) 595
Tru1I TTAA 2 cut(s) 104, 314
Tru9I TTAA 2 cut(s) 104, 314
TseI GCWGC 3 cut(s) 240, 397, 496
TspDTI ATGAA 1 cut(s) 58
XapI RAATTY 2 cut(s) 28, 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.