Rmu_sc0004935.1_g000004

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004935.1
OG0031327
Physical Location & Seq
Forward (+)
17471 .. 20830
3360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004935.1_g000004.1.cds

Sequence Viewer

Length: 447 bp
atgtttttcgatggggatgaccctgaaatgggggtcgaaatttggaactttatggttgaaaaccatgttgagcctcttgaagttgctgccaatgccttgcttttgggtctttgtaagttggataggttgtcggagttgaagaggagtgctgacgatatgcgagagaatcgaggattcaggattccaagtttgctagcggagctggttaccgcctgttggtgcaagcagatctgtttcccgttggtggtgcctagcggaggctgcccagcggagtgcgaaggcttaggtgctaggcgcggtccgatagccgctgacagttggcggaggaggccggttccgctggctgcagctagcggtggtgttgttagttgcagctactatgctttgtccggcggcacaccgccggggccgttggatttagctagcggaaggccgaggaagaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

148

Amino Acids

15.99

Weight (kDa)

5.86

Isoelectric Point (pI)

59.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031327)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8100954.1_g000001 Rmu_sc0004935.1_g000004

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 247
AccII CGCG 1 cut(s) 297
AcsI RAATTY 1 cut(s) 39
AfiI CCNNNNNNNGG 5 cut(s) 28, 29, 216, 244, 257
AgsI TTSAA 3 cut(s) 59, 80, 139
AluBI AGCT 4 cut(s) 202, 350, 375, 422
AluI AGCT 4 cut(s) 202, 350, 375, 422
AoxI GGCC 3 cut(s) 329, 407, 431
ApeKI GCWGC 5 cut(s) 86, 261, 344, 347, 372
ApoI RAATTY 1 cut(s) 39
AspLEI GCGC 1 cut(s) 297
AspS9I GGNCC 2 cut(s) 299, 407
AsuC2I CCSGG 1 cut(s) 405
AsuNHI GCTAGC 3 cut(s) 193, 350, 422
AvaII GGWCC 1 cut(s) 299
BanI GGYRCC 1 cut(s) 247
BbvI GCAGC 5 cut(s) 73, 248, 331, 359, 384
BccI CCATC 1 cut(s) 5
BceAI ACGGC 1 cut(s) 394
BcnI CCSGG 1 cut(s) 405
BfaI CTAG 5 cut(s) 194, 252, 291, 351, 423
BfmI CTRYAG 1 cut(s) 345
BglII AGATCT 1 cut(s) 228
BisI GCNGC 7 cut(s) 87, 262, 309, 345, 348, 373, 394
BlsI GCNGC 7 cut(s) 88, 263, 310, 346, 349, 374, 395
Bme1390I CCNGG 1 cut(s) 405
Bme18I GGWCC 1 cut(s) 299
BmgT120I GGNCC 2 cut(s) 299, 407
BmiI GGNNCC 3 cut(s) 249, 336, 408
BmrFI CCNGG 1 cut(s) 405
BmtI GCTAGC 3 cut(s) 197, 354, 426
Bpu10I CCTNAGC 1 cut(s) 283
BpuMI CCSGG 1 cut(s) 405
BsaJI CCNNGG 2 cut(s) 404, 434
Bsc4I CCNNNNNNNGG 5 cut(s) 28, 29, 216, 244, 257
Bse118I RCCGGY 1 cut(s) 331
BseDI CCNNGG 2 cut(s) 404, 434
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 5 cut(s) 28, 29, 216, 244, 257
BseRI GAGGAG 2 cut(s) 157, 340
BseXI GCAGC 5 cut(s) 73, 248, 331, 359, 384
BseYI CCCAGC 1 cut(s) 265
Bsh1236I CGCG 1 cut(s) 297
BshFI GGCC 3 cut(s) 331, 409, 433
BshNI GGYRCC 1 cut(s) 247
BsiSI CCGG 3 cut(s) 332, 390, 404
BslI CCNNNNNNNGG 5 cut(s) 28, 29, 216, 244, 257
BsnI GGCC 3 cut(s) 331, 409, 433
Bsp143I GATC 1 cut(s) 228
BspANI GGCC 3 cut(s) 331, 409, 433
BspFNI CGCG 1 cut(s) 297
BspLI GGNNCC 3 cut(s) 249, 336, 408
BspMAI CTGCAG 1 cut(s) 349
BspOI GCTAGC 3 cut(s) 197, 354, 426
BspT107I GGYRCC 1 cut(s) 247
BsrFI RCCGGY 1 cut(s) 331
BssAI RCCGGY 1 cut(s) 331
BssECI CCNNGG 2 cut(s) 404, 434
BssMI GATC 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 317
Bst6I CTCTTC 2 cut(s) 134, 434
BstC8I GCNNGC 5 cut(s) 195, 224, 342, 352, 424
BstDEI CTNAG 1 cut(s) 283
BstEII GGTNACC 1 cut(s) 205
BstENI CCTNNNNNAGG 1 cut(s) 255
BstF5I GGATG 1 cut(s) 22
BstFNI CGCG 1 cut(s) 297
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 1 cut(s) 231
BstMBI GATC 1 cut(s) 228
BstMWI GCNNNNNNNGC 5 cut(s) 92, 199, 261, 328, 337
BstPI GGTNACC 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 403
BstSFI CTRYAG 1 cut(s) 345
BstUI CGCG 1 cut(s) 297
BstV1I GCAGC 5 cut(s) 73, 248, 331, 359, 384
BstX2I RGATCY 1 cut(s) 228
BstYI RGATCY 1 cut(s) 228
BsuRI GGCC 3 cut(s) 331, 409, 433
BtsCI GGATG 1 cut(s) 22
Cac8I GCNNGC 5 cut(s) 195, 224, 342, 352, 424
CfoI GCGC 1 cut(s) 297
Cfr10I RCCGGY 1 cut(s) 331
Cfr13I GGNCC 2 cut(s) 299, 407
CpoI CGGWCCG 1 cut(s) 299
CspI CGGWCCG 1 cut(s) 299
CviAII CATG 1 cut(s) 65
DdeI CTNAG 1 cut(s) 283
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
Eam1104I CTCTTC 2 cut(s) 134, 434
EarI CTCTTC 2 cut(s) 134, 434
EciI GGCGGA 1 cut(s) 337
Eco47I GGWCC 1 cut(s) 299
Eco91I GGTNACC 1 cut(s) 205
EcoNI CCTNNNNNAGG 1 cut(s) 255
EcoO65I GGTNACC 1 cut(s) 205
FaeI CATG 1 cut(s) 68
FaiI YATR 4 cut(s) 53, 66, 158, 381
FatI CATG 1 cut(s) 64
Fnu4HI GCNGC 7 cut(s) 87, 262, 309, 345, 348, 373, 394
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 7 cut(s) 87, 262, 309, 345, 348, 373, 394
FspBI CTAG 5 cut(s) 194, 252, 291, 351, 423
GlaI GCGC 1 cut(s) 296
GluI GCNGC 7 cut(s) 87, 262, 309, 345, 348, 373, 394
GsaI CCCAGC 1 cut(s) 269
HaeIII GGCC 3 cut(s) 331, 409, 433
HapII CCGG 3 cut(s) 332, 390, 404
HhaI GCGC 1 cut(s) 297
Hin1II CATG 1 cut(s) 68
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HinfI GANTC 3 cut(s) 166, 174, 181
HpaII CCGG 3 cut(s) 332, 390, 404
Hpy188I TCNGA 2 cut(s) 133, 303
Hpy188III TCNNGA 2 cut(s) 77, 178
HpyAV CCTTC 2 cut(s) 272, 423
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4V TGCA 3 cut(s) 222, 347, 372
HpyF10VI GCNNNNNNNGC 5 cut(s) 92, 199, 261, 328, 337
HpyF3I CTNAG 1 cut(s) 283
Hsp92II CATG 1 cut(s) 68
HspAI GCGC 1 cut(s) 295
Kzo9I GATC 1 cut(s) 228
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 9 cut(s) 36, 163, 188, 226, 279, 326, 345, 403, 417
Lsp1109I GCAGC 5 cut(s) 73, 248, 331, 359, 384
MaeI CTAG 5 cut(s) 194, 252, 291, 351, 423
MaeIII GTNAC 1 cut(s) 205
MalI GATC 1 cut(s) 230
MboI GATC 1 cut(s) 228
MboII GAAGA 1 cut(s) 151
MflI RGATCY 1 cut(s) 228
MluCI AATT 1 cut(s) 39
MmeI TCCRAC 3 cut(s) 99, 111, 393
MnlI CCTC 8 cut(s) 84, 135, 164, 251, 318, 321, 429, 435
MspA1I CMGCKG 3 cut(s) 269, 311, 340
MspI CCGG 3 cut(s) 332, 390, 404
MspR9I CCNGG 1 cut(s) 405
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 5 cut(s) 92, 199, 261, 328, 337
NciI CCSGG 1 cut(s) 405
NdeII GATC 1 cut(s) 228
NheI GCTAGC 3 cut(s) 193, 350, 422
NlaIII CATG 1 cut(s) 68
NlaIV GGNNCC 3 cut(s) 249, 336, 408
PfeI GAWTC 3 cut(s) 166, 174, 181
PkrI GCNGC 7 cut(s) 88, 263, 310, 346, 349, 374, 395
PspEI GGTNACC 1 cut(s) 205
PspFI CCCAGC 1 cut(s) 265
PspN4I GGNNCC 3 cut(s) 249, 336, 408
PspPI GGNCC 2 cut(s) 299, 407
PstI CTGCAG 1 cut(s) 349
PsuI RGATCY 1 cut(s) 228
Rsr2I CGGWCCG 1 cut(s) 299
RsrII CGGWCCG 1 cut(s) 299
SatI GCNGC 7 cut(s) 87, 262, 309, 345, 348, 373, 394
Sau3AI GATC 1 cut(s) 228
Sau96I GGNCC 2 cut(s) 299, 407
ScrFI CCNGG 1 cut(s) 405
SetI ASST 7 cut(s) 128, 204, 289, 352, 377, 424, 446
SfcI CTRYAG 1 cut(s) 345
SinI GGWCC 1 cut(s) 299
Sse9I AATT 1 cut(s) 39
SspMI CTAG 5 cut(s) 194, 252, 291, 351, 423
StyD4I CCNGG 1 cut(s) 403
TaaI ACNGT 1 cut(s) 317
TaqI TCGA 3 cut(s) 9, 36, 169
TasI AATT 1 cut(s) 39
TauI GCSGC 2 cut(s) 311, 396
TfiI GAWTC 3 cut(s) 166, 174, 181
TseI GCWGC 5 cut(s) 86, 261, 344, 347, 372
VpaK11BI GGWCC 1 cut(s) 299
XagI CCTNNNNNAGG 1 cut(s) 255
XapI RAATTY 1 cut(s) 39
XspI CTAG 5 cut(s) 194, 252, 291, 351, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.