Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8131062.1

Orthogroup ID

OG0029092

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 563

Gene Structure 562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8131062.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 562 bp

atgtctgaactgataaaacaacctgaccacattaaaagggcgacggaagagctagacagagtaattggaagagacagatgggtggaagagaaagacattccacaacttccttatatagacgcaatcatgaaagagacaatgaggaaacacccagtggttgttttgcttccgccacatttggctcttgacgattgcaatgtgggtggtttcgatattcgtagagggacaagagtgttcataaacacatggagcataggaagagacccctcagtgtgggatgcaccggaagagttcaatccggagaggtttctgggaaacaaggcaatagatgtgaagggacaaagtttcgaattgttgccatttggttcaggaaggagaatgtgccctggttatagccttggactgaaaatgattggatcttccttggccaacatgttacatggattcaactggaaattacctgaaaacatgaaagtagaagatttggggatggaggaagcttgtggattggtaacacataggaagttcccacttgttgcagtcacagagcctcggcttccaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0044550 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071731 GO:0071732 GO:0097366 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

187

Amino Acids

21.28

Weight (kDa)

6.22

Isoelectric Point (pI)

54.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029092)

Species	Orthologous Gene IDs
prunus_persica	Prupe.7G197600_v2.0.a1
rosa_multiflora	Rmu_co8131062.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	298
AciI	CCGC	1 cut(s)	170
AclWI	GGATC	1 cut(s)	424
AcoI	YGGCCR	1 cut(s)	426
AdeI	CACNNNGTG	1 cut(s)	154
AfiI	CCNNNNNNNGG	1 cut(s)	273
AflIII	ACRYGT	1 cut(s)	432
AgsI	TTSAA	2 cut(s)	295, 448
AjnI	CCWGG	1 cut(s)	385
AluBI	AGCT	2 cut(s)	52, 500
AluI	AGCT	2 cut(s)	52, 500
Alw26I	GTCTC	3 cut(s)	66, 128, 255
AlwI	GGATC	1 cut(s)	424
Aor13HI	TCCGGA	1 cut(s)	298
AoxI	GGCC	1 cut(s)	426
AsuII	TTCGAA	1 cut(s)	348
BaeGI	GKGCMC	1 cut(s)	386
BalI	TGGCCA	1 cut(s)	428
BccI	CCATC	2 cut(s)	72, 484
BciT130I	CCWGG	1 cut(s)	387
BcoDI	GTCTC	3 cut(s)	66, 128, 255
BfaI	CTAG	1 cut(s)	53
Bme1390I	CCNGG	1 cut(s)	387
BmrFI	CCNGG	1 cut(s)	387
BmrI	ACTGGG	1 cut(s)	146
BmsI	GCATC	1 cut(s)	268
BmuI	ACTGGG	1 cut(s)	146
Bpu14I	TTCGAA	1 cut(s)	348
BsaI	GGTCTC	1 cut(s)	255
BsaJI	CCNNGG	4 cut(s)	385, 397, 423, 551
BsaWI	WCCGGW	2 cut(s)	283, 298
Bsc4I	CCNNNNNNNGG	1 cut(s)	273
Bse1I	ACTGG	2 cut(s)	152, 455
Bse3DI	GCAATG	1 cut(s)	202
BseAI	TCCGGA	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	387
BseDI	CCNNGG	4 cut(s)	385, 397, 423, 551
BseGI	GGATG	2 cut(s)	283, 495
BseLI	CCNNNNNNNGG	1 cut(s)	273
BseMI	GCAATG	1 cut(s)	202
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	152, 455
BseSI	GKGCMC	1 cut(s)	386
BshFI	GGCC	1 cut(s)	428
BsiSI	CCGG	2 cut(s)	284, 299
BslFI	GGGAC	2 cut(s)	238, 351
BslI	CCNNNNNNNGG	1 cut(s)	273
BsmAI	GTCTC	3 cut(s)	66, 128, 255
BsmFI	GGGAC	2 cut(s)	238, 351
BsnI	GGCC	1 cut(s)	428
Bso31I	GGTCTC	1 cut(s)	255
Bsp119I	TTCGAA	1 cut(s)	348
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp13I	TCCGGA	1 cut(s)	298
Bsp143I	GATC	1 cut(s)	416
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	1 cut(s)	428
BspCNI	CTCAG	1 cut(s)	281
BspEI	TCCGGA	1 cut(s)	298
BspHI	TCATGA	1 cut(s)	126
BspPI	GGATC	1 cut(s)	424
BspQI	GCTCTTC	1 cut(s)	42
BspT104I	TTCGAA	1 cut(s)	348
BspTNI	GGTCTC	1 cut(s)	255
BsrDI	GCAATG	1 cut(s)	202
BsrI	ACTGG	2 cut(s)	152, 455
BssECI	CCNNGG	4 cut(s)	385, 397, 423, 551
BssMI	GATC	1 cut(s)	416
BssT1I	CCWWGG	2 cut(s)	397, 423
Bst2UI	CCWGG	1 cut(s)	387
Bst6I	CTCTTC	5 cut(s)	42, 64, 81, 253, 282
BstBI	TTCGAA	1 cut(s)	348
BstDEI	CTNAG	1 cut(s)	268
BstF5I	GGATG	2 cut(s)	283, 495
BstKTI	GATC	1 cut(s)	419
BstMAI	GTCTC	3 cut(s)	66, 128, 255
BstMBI	GATC	1 cut(s)	416
BstNI	CCWGG	1 cut(s)	387
BstNSI	RCATGY	1 cut(s)	436
BstSCI	CCNGG	1 cut(s)	385
BstSLI	GKGCMC	1 cut(s)	386
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
BsuRI	GGCC	1 cut(s)	428
BtsCI	GGATG	2 cut(s)	283, 495
BtsIMutI	CAGTG	2 cut(s)	159, 276
CciI	TCATGA	1 cut(s)	126
CseI	GACGC	1 cut(s)	128
CspCI	CAANNNNNGTGG	2 cut(s)	184, 219
CviAII	CATG	5 cut(s)	127, 246, 433, 440, 469
CviJI	RGCY	7 cut(s)	52, 182, 396, 428, 500, 550, 556
CviKI_1	RGCY	7 cut(s)	52, 182, 396, 428, 500, 550, 556
DdeI	CTNAG	1 cut(s)	268
DpnI	GATC	1 cut(s)	418
DpnII	GATC	1 cut(s)	416
DraIII	CACNNNGTG	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	426
Eam1104I	CTCTTC	5 cut(s)	42, 64, 81, 253, 282
EarI	CTCTTC	5 cut(s)	42, 64, 81, 253, 282
EciI	GGCGGA	1 cut(s)	159
Eco130I	CCWWGG	2 cut(s)	397, 423
Eco31I	GGTCTC	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	385
EcoT14I	CCWWGG	2 cut(s)	397, 423
ErhI	CCWWGG	2 cut(s)	397, 423
FaeI	CATG	5 cut(s)	130, 249, 436, 443, 472
FaqI	GGGAC	2 cut(s)	238, 351
FatI	CATG	5 cut(s)	126, 245, 432, 439, 468
FokI	GGATG	2 cut(s)	290, 502
FspBI	CTAG	1 cut(s)	53
HaeIII	GGCC	1 cut(s)	428
HapII	CCGG	2 cut(s)	284, 299
HgaI	GACGC	1 cut(s)	128
Hin1II	CATG	5 cut(s)	130, 249, 436, 443, 472
HindIII	AAGCTT	1 cut(s)	498
HinfI	GANTC	1 cut(s)	444
HpaII	CCGG	2 cut(s)	284, 299
Hpy188I	TCNGA	1 cut(s)	7
Hpy188III	TCNNGA	4 cut(s)	127, 185, 299, 369
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	2 cut(s)	328, 366
HpyCH4V	TGCA	3 cut(s)	195, 281, 539
HpyF3I	CTNAG	1 cut(s)	268
Hsp92II	CATG	5 cut(s)	130, 249, 436, 443, 472
Kpn2I	TCCGGA	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	416
LguI	GCTCTTC	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	249
LweI	GCATC	1 cut(s)	268
MaeI	CTAG	1 cut(s)	53
MaeIII	GTNAC	3 cut(s)	435, 511, 541
MalI	GATC	1 cut(s)	418
MboI	GATC	1 cut(s)	416
MboII	GAAGA	7 cut(s)	59, 81, 98, 270, 299, 411, 491
MflI	RGATCY	1 cut(s)	416
MhlI	GDGCHC	1 cut(s)	386
MlsI	TGGCCA	1 cut(s)	428
MluCI	AATT	3 cut(s)	63, 350, 455
MluNI	TGGCCA	1 cut(s)	428
MnlI	CCTC	6 cut(s)	135, 215, 277, 297, 487, 561
Mox20I	TGGCCA	1 cut(s)	428
MroI	TCCGGA	1 cut(s)	298
MscI	TGGCCA	1 cut(s)	428
MseI	TTAA	1 cut(s)	33
Msp20I	TGGCCA	1 cut(s)	428
MspI	CCGG	2 cut(s)	284, 299
MspR9I	CCNGG	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	387
NdeII	GATC	1 cut(s)	416
NlaIII	CATG	5 cut(s)	130, 249, 436, 443, 472
NmeAIII	GCCGAG	1 cut(s)	532
NmuCI	GTSAC	1 cut(s)	541
NspI	RCATGY	1 cut(s)	436
NspV	TTCGAA	1 cut(s)	348
PagI	TCATGA	1 cut(s)	126
PciI	ACATGT	1 cut(s)	432
PciSI	GCTCTTC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	444
PscI	ACATGT	1 cut(s)	432
Psp6I	CCWGG	1 cut(s)	385
PspGI	CCWGG	1 cut(s)	385
PsuI	RGATCY	1 cut(s)	416
SapI	GCTCTTC	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	416
ScrFI	CCNGG	1 cut(s)	387
SduI	GDGCHC	1 cut(s)	386
SetI	ASST	5 cut(s)	25, 54, 308, 463, 502
SfaNI	GCATC	1 cut(s)	268
SfuI	TTCGAA	1 cut(s)	348
Sse9I	AATT	3 cut(s)	63, 350, 455
SsiI	CCGC	1 cut(s)	170
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	385
StyI	CCWWGG	2 cut(s)	397, 423
TaqI	TCGA	2 cut(s)	210, 348
TasI	AATT	3 cut(s)	63, 350, 455
TfiI	GAWTC	1 cut(s)	444
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	2 cut(s)	159, 276
TseFI	GTSAC	1 cut(s)	541
Tsp45I	GTSAC	1 cut(s)	541
TspDTI	ATGAA	3 cut(s)	143, 226, 485
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	2 cut(s)	159, 276
XceI	RCATGY	1 cut(s)	436
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.