Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8157236.1

Orthogroup ID

OG0031415

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 643

Gene Structure 643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8157236.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 236 bp

aacccaccatcgaatatgcaggaagaaaaatgagggagagccacaacaacctccaccaccgcgcaatgacgtcgtcctccgctgcttctcgattgggtttggggataaggactgctttttcctccaccaccaacgaaaccgtggaggctcgaggccacattctaagggccaccggcaggaaggaccgccacagcaaggtctgtaccgccaaaggcctcagggaccatcgcgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

77

Amino Acids

8.55

Weight (kDa)

11.4

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031415)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8157236.1_g000001 Rmu_sc0008893.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	229
AatII	GACGTC	1 cut(s)	73
AccII	CGCG	2 cut(s)	62, 230
AciI	CCGC	4 cut(s)	60, 80, 186, 206
AcyI	GRCGYC	1 cut(s)	70
AfaI	GTAC	1 cut(s)	204
AfiI	CCNNNNNNNGG	2 cut(s)	176, 195
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	3 cut(s)	153, 167, 213
ApeKI	GCWGC	1 cut(s)	82
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	3 cut(s)	167, 183, 222
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	2 cut(s)	183, 222
AxyI	CCTNAGG	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	2 cut(s)	16, 233
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BfaI	CTAG	1 cut(s)	234
BisI	GCNGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	84
Bme18I	GGWCC	2 cut(s)	183, 222
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	3 cut(s)	167, 183, 222
BmiI	GGNNCC	1 cut(s)	223
BsaHI	GRCGYC	1 cut(s)	70
BsaJI	CCNNGG	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 195
Bse118I	RCCGGY	1 cut(s)	172
Bse21I	CCTNAGG	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	140
BseLI	CCNNNNNNNGG	2 cut(s)	176, 195
BseMI	GCAATG	1 cut(s)	71
BseMII	CTCAG	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	69
Bsh1236I	CGCG	2 cut(s)	62, 230
BshFI	GGCC	3 cut(s)	155, 169, 215
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	173
BslI	CCNNNNNNNGG	2 cut(s)	176, 195
BsnI	GGCC	3 cut(s)	155, 169, 215
BsoBI	CYCGRG	1 cut(s)	149
BspACI	CCGC	4 cut(s)	60, 80, 186, 206
BspANI	GGCC	3 cut(s)	155, 169, 215
BspCNI	CTCAG	1 cut(s)	230
BspFNI	CGCG	2 cut(s)	62, 230
BspLI	GGNNCC	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	172
BssAI	RCCGGY	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	140
BssNI	GRCGYC	1 cut(s)	70
Bst4CI	ACNGT	1 cut(s)	141
BstACI	GRCGYC	1 cut(s)	70
BstDEI	CTNAG	2 cut(s)	163, 217
BstDSI	CCRYGG	1 cut(s)	140
BstFNI	CGCG	2 cut(s)	62, 230
BstHHI	GCGC	1 cut(s)	64
BstUI	CGCG	2 cut(s)	62, 230
BstV1I	GCAGC	1 cut(s)	69
Bsu36I	CCTNAGG	1 cut(s)	217
BsuRI	GGCC	3 cut(s)	155, 169, 215
BtgI	CCRYGG	1 cut(s)	140
BtgZI	GCGATG	1 cut(s)	211
CfoI	GCGC	1 cut(s)	64
Cfr10I	RCCGGY	1 cut(s)	172
Cfr13I	GGNCC	3 cut(s)	167, 183, 222
CseI	GACGC	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	203
CviJI	RGCY	5 cut(s)	41, 148, 155, 169, 215
CviKI_1	RGCY	5 cut(s)	41, 148, 155, 169, 215
CviQI	GTAC	1 cut(s)	203
DdeI	CTNAG	2 cut(s)	163, 217
DrdI	GACNNNNNNGTC	1 cut(s)	229
DseDI	GACNNNNNNGTC	1 cut(s)	229
Eco147I	AGGCCT	1 cut(s)	215
Eco47I	GGWCC	2 cut(s)	183, 222
Eco81I	CCTNAGG	1 cut(s)	217
Eco88I	CYCGRG	1 cut(s)	149
FaiI	YATR	1 cut(s)	17
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
Fnu4HI	GCNGC	1 cut(s)	83
Fsp4HI	GCNGC	1 cut(s)	83
FspBI	CTAG	1 cut(s)	234
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	1 cut(s)	83
HaeIII	GGCC	3 cut(s)	155, 169, 215
HapII	CCGG	1 cut(s)	173
HgaI	GACGC	1 cut(s)	219
HhaI	GCGC	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	70
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HpaII	CCGG	1 cut(s)	173
Hpy188III	TCNNGA	1 cut(s)	89
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	1 cut(s)	174
HpyCH4III	ACNGT	1 cut(s)	141
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	1 cut(s)	19
HpyF3I	CTNAG	2 cut(s)	163, 217
HpySE526I	ACGT	1 cut(s)	70
Hsp92I	GRCGYC	1 cut(s)	70
HspAI	GCGC	1 cut(s)	62
LpnPI	CCDG	4 cut(s)	5, 162, 186, 204
Lsp1109I	GCAGC	1 cut(s)	69
MaeI	CTAG	1 cut(s)	234
MaeII	ACGT	1 cut(s)	70
MboII	GAAGA	1 cut(s)	35
MnlI	CCTC	7 cut(s)	26, 61, 87, 132, 138, 145, 226
MspA1I	CMGCKG	1 cut(s)	82
MspI	CCGG	1 cut(s)	173
MvnI	CGCG	2 cut(s)	62, 230
NlaIV	GGNNCC	1 cut(s)	223
PaeR7I	CTCGAG	1 cut(s)	149
PceI	AGGCCT	1 cut(s)	215
PflFI	GACNNNGTC	1 cut(s)	72
PkrI	GCNGC	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	3 cut(s)	167, 183, 222
PspXI	VCTCGAGB	1 cut(s)	149
PsyI	GACNNNGTC	1 cut(s)	72
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
SatI	GCNGC	1 cut(s)	83
Sau96I	GGNCC	3 cut(s)	167, 183, 222
SetI	ASST	3 cut(s)	53, 73, 200
Sfr274I	CTCGAG	1 cut(s)	149
SinI	GGWCC	2 cut(s)	183, 222
SlaI	CTCGAG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SseBI	AGGCCT	1 cut(s)	215
SsiI	CCGC	4 cut(s)	60, 80, 186, 206
SspMI	CTAG	1 cut(s)	234
StuI	AGGCCT	1 cut(s)	215
TaaI	ACNGT	1 cut(s)	141
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	3 cut(s)	11, 90, 150
TseI	GCWGC	1 cut(s)	82
Tth111I	GACNNNGTC	1 cut(s)	72
VpaK11BI	GGWCC	2 cut(s)	183, 222
XcmI	CCANNNNNNNNNTGG	1 cut(s)	138
XhoI	CTCGAG	1 cut(s)	149
XspI	CTAG	1 cut(s)	234
ZraI	GACGTC	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.