Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008893.1

Orthogroup ID

OG0031415

Physical Location & Seq

Genomic Coordinates Reverse (-)

3358 .. 3861

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008893.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atgggggagagccacgacaacctccaccaccgcgcaatgacgtcgtcctccgctgcttctcgattgggtttgggtataaggactgcttcttcctccatcgccagcgaaatcgtggaggctcgaggccacattctaagggccaccgaccggaaggaccgccataacaaggtctacaccgccaaaggccccagggaccaccacgttcggctcgccgcccaaccgctattcaattctacgacttgcaagaccggctcggatacgaccagcccaacaaggttgtcgattgggtcatcaagaaagccaaggccgcaatcgacgagctgccgccgtggaacccgaactcaatttttgttcagacaacatcttctccaacggtgccgatatccgccgcgcaggacacgcagaacgcgagcctccatttctcgatggtggaggctccgagttctttgtctgctaatcggcgaggcgcaatggtgggtggcagcggagtggcggagttggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

167

Amino Acids

19.18

Weight (kDa)

11.78

Isoelectric Point (pI)

53.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031415)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8157236.1_g000001 Rmu_sc0008893.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	44
AccB1I	GGYRCC	1 cut(s)	375
AccI	GTMKAC	1 cut(s)	171
AccII	CGCG	3 cut(s)	33, 391, 409
AcyI	GRCGYC	1 cut(s)	41
AfiI	CCNNNNNNNGG	2 cut(s)	147, 166
AgsI	TTSAA	1 cut(s)	229
AjnI	CCWGG	1 cut(s)	188
AluBI	AGCT	1 cut(s)	321
AluI	AGCT	1 cut(s)	321
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	4 cut(s)	124, 138, 184, 305
ApeKI	GCWGC	3 cut(s)	53, 321, 482
AspLEI	GCGC	3 cut(s)	35, 393, 469
AspS9I	GGNCC	4 cut(s)	138, 154, 185, 193
AvaI	CYCGRG	1 cut(s)	120
AvaII	GGWCC	2 cut(s)	154, 193
BanI	GGYRCC	1 cut(s)	375
BbvI	GCAGC	3 cut(s)	40, 308, 494
BccI	CCATC	2 cut(s)	104, 420
BceAI	ACGGC	1 cut(s)	312
BcgI	CGANNNNNNTGC	2 cut(s)	24, 58
BciT130I	CCWGG	1 cut(s)	190
BciVI	GTATCC	1 cut(s)	250
BfuI	GTATCC	1 cut(s)	250
BisI	GCNGC	7 cut(s)	54, 213, 308, 322, 325, 389, 483
BlsI	GCNGC	7 cut(s)	55, 214, 309, 323, 326, 390, 484
Bme1390I	CCNGG	1 cut(s)	190
Bme18I	GGWCC	2 cut(s)	154, 193
BmeT110I	CYCGRG	1 cut(s)	120
BmgT120I	GGNCC	4 cut(s)	138, 154, 185, 193
BmiI	GGNNCC	5 cut(s)	187, 194, 334, 377, 437
BmrFI	CCNGG	1 cut(s)	190
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	4 cut(s)	188, 189, 302, 328
BsaWI	WCCGGW	1 cut(s)	147
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 166
Bse118I	RCCGGY	1 cut(s)	248
Bse3DI	GCAATG	2 cut(s)	42, 476
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	4 cut(s)	188, 189, 302, 328
BseLI	CCNNNNNNNGG	2 cut(s)	147, 166
BseMI	GCAATG	2 cut(s)	42, 476
BseXI	GCAGC	3 cut(s)	40, 308, 494
Bsh1236I	CGCG	3 cut(s)	33, 391, 409
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	4 cut(s)	126, 140, 186, 307
BshNI	GGYRCC	1 cut(s)	375
BsiEI	CGRYCG	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	2 cut(s)	148, 249
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	2 cut(s)	147, 166
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	4 cut(s)	126, 140, 186, 307
BsoBI	CYCGRG	1 cut(s)	120
BspANI	GGCC	4 cut(s)	126, 140, 186, 307
BspFNI	CGCG	3 cut(s)	33, 391, 409
BspLI	GGNNCC	5 cut(s)	187, 194, 334, 377, 437
BspT107I	GGYRCC	1 cut(s)	375
BsrDI	GCAATG	2 cut(s)	42, 476
BsrFI	RCCGGY	1 cut(s)	248
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	4 cut(s)	188, 189, 302, 328
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	302
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	1 cut(s)	375
BstACI	GRCGYC	1 cut(s)	41
BstC8I	GCNNGC	3 cut(s)	103, 210, 411
BstDEI	CTNAG	1 cut(s)	134
BstDSI	CCRYGG	1 cut(s)	328
BstFNI	CGCG	3 cut(s)	33, 391, 409
BstHHI	GCGC	3 cut(s)	35, 393, 469
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	3 cut(s)	249, 307, 399
BstNI	CCWGG	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	188
BstUI	CGCG	3 cut(s)	33, 391, 409
BstV1I	GCAGC	3 cut(s)	40, 308, 494
BsuI	GTATCC	1 cut(s)	250
BsuRI	GGCC	4 cut(s)	126, 140, 186, 307
BtgI	CCRYGG	1 cut(s)	328
BtgZI	GCGATG	1 cut(s)	82
Cac8I	GCNNGC	3 cut(s)	103, 210, 411
CfoI	GCGC	3 cut(s)	35, 393, 469
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	4 cut(s)	138, 154, 185, 193
DdeI	CTNAG	1 cut(s)	134
EciI	GGCGGA	1 cut(s)	375
Eco130I	CCWWGG	1 cut(s)	302
Eco32I	GATATC	1 cut(s)	383
Eco47I	GGWCC	2 cut(s)	154, 193
Eco88I	CYCGRG	1 cut(s)	120
EcoO109I	RGGNCCY	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	188
EcoRV	GATATC	1 cut(s)	383
EcoT14I	CCWWGG	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	302
FaiI	YATR	2 cut(s)	77, 162
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FaqI	GGGAC	1 cut(s)	206
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	7 cut(s)	54, 213, 308, 322, 325, 389, 483
Fsp4HI	GCNGC	7 cut(s)	54, 213, 308, 322, 325, 389, 483
GlaI	GCGC	3 cut(s)	34, 392, 468
GluI	GCNGC	7 cut(s)	54, 213, 308, 322, 325, 389, 483
HaeIII	GGCC	4 cut(s)	126, 140, 186, 307
HapII	CCGG	2 cut(s)	148, 249
HhaI	GCGC	3 cut(s)	35, 393, 469
Hin1I	GRCGYC	1 cut(s)	41
Hin6I	GCGC	3 cut(s)	33, 391, 467
HinP1I	GCGC	3 cut(s)	33, 391, 467
HpaII	CCGG	2 cut(s)	148, 249
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	3 cut(s)	256, 356, 440
Hpy188III	TCNNGA	3 cut(s)	60, 294, 423
Hpy8I	GTNNAC	1 cut(s)	172
Hpy99I	CGWCG	2 cut(s)	46, 319
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	375
HpyCH4IV	ACGT	2 cut(s)	41, 201
HpyCH4V	TGCA	1 cut(s)	243
HpyF10VI	GCNNNNNNNGC	3 cut(s)	249, 307, 399
HpyF3I	CTNAG	1 cut(s)	134
HpySE526I	ACGT	2 cut(s)	41, 201
Hsp92I	GRCGYC	1 cut(s)	41
HspAI	GCGC	3 cut(s)	33, 391, 467
LmnI	GCTCC	1 cut(s)	441
LpnPI	CCDG	7 cut(s)	115, 161, 175, 202, 262, 277, 379
Lsp1109I	GCAGC	3 cut(s)	40, 308, 494
MaeII	ACGT	2 cut(s)	41, 201
MboII	GAAGA	2 cut(s)	81, 356
MluCI	AATT	2 cut(s)	229, 344
MmeI	TCCRAC	1 cut(s)	394
MnlI	CCTC	8 cut(s)	32, 58, 103, 109, 116, 424, 426, 457
MspA1I	CMGCKG	2 cut(s)	53, 485
MspI	CCGG	2 cut(s)	148, 249
MspR9I	CCNGG	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	190
MvnI	CGCG	3 cut(s)	33, 391, 409
MwoI	GCNNNNNNNGC	3 cut(s)	249, 307, 399
NlaIV	GGNNCC	5 cut(s)	187, 194, 334, 377, 437
PaeR7I	CTCGAG	1 cut(s)	120
PasI	CCCWGGG	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	1 cut(s)	406
PflFI	GACNNNGTC	1 cut(s)	43
PkrI	GCNGC	7 cut(s)	55, 214, 309, 323, 326, 390, 484
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	5 cut(s)	187, 194, 334, 377, 437
PspPI	GGNCC	4 cut(s)	138, 154, 185, 193
PspXI	VCTCGAGB	1 cut(s)	120
PsyI	GACNNNGTC	1 cut(s)	43
SatI	GCNGC	7 cut(s)	54, 213, 308, 322, 325, 389, 483
Sau96I	GGNCC	4 cut(s)	138, 154, 185, 193
ScrFI	CCNGG	1 cut(s)	190
SetI	ASST	6 cut(s)	24, 44, 171, 204, 278, 323
Sfr274I	CTCGAG	1 cut(s)	120
SinI	GGWCC	2 cut(s)	154, 193
SlaI	CTCGAG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
Sse9I	AATT	2 cut(s)	229, 344
StyD4I	CCNGG	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	302
TaaI	ACNGT	1 cut(s)	375
TaiI	ACGT	2 cut(s)	44, 204
TaqI	TCGA	5 cut(s)	61, 121, 281, 314, 424
TasI	AATT	2 cut(s)	229, 344
TauI	GCSGC	4 cut(s)	215, 310, 327, 391
TseI	GCWGC	3 cut(s)	53, 321, 482
Tth111I	GACNNNGTC	1 cut(s)	43
VpaK11BI	GGWCC	2 cut(s)	154, 193
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XhoI	CTCGAG	1 cut(s)	120
XmiI	GTMKAC	1 cut(s)	171
ZraI	GACGTC	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.