Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8157436.1

Orthogroup ID

OG0025563

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 640

Gene Structure 640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8157436.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atgatattttctaatgattttgctaagttcaacaaaggatatgtgaaatcaatggcagattgtattggagataaaagcttgctctgtgtaccacatgagaaccataaaagaataaggcgcttattatcagatcctttctccatgaattctttatcttcgttcattgagaaattcgatagaatgctgtgtcagaagctgaagaaactagaacaaggtgggaaaagcttttcggtgcttgacttcagtatgaggatgacatttgatgcgatgtgctgcatgctaatgagtgtcatggatgagcccttgctaaggcagcttgagaaagactgcactgcagtctcggatggaatcttatctgttcctgtcatgattccaggcactagatattacaaaggcatcaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

134

Amino Acids

15.33

Weight (kDa)

8.93

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025563)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8157436.1_g000001 Rmu_sc0003465.1_g000044
rosa_samantha	Rh2AG332900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	125
AcsI	RAATTY	2 cut(s)	145, 170
AcuI	CTGAAG	2 cut(s)	218, 226
AfaI	GTAC	1 cut(s)	90
AfiI	CCNNNNNNNGG	1 cut(s)	309
AgsI	TTSAA	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	373
AluBI	AGCT	4 cut(s)	78, 196, 225, 316
AluI	AGCT	4 cut(s)	78, 196, 225, 316
Alw26I	GTCTC	1 cut(s)	343
AlwI	GGATC	1 cut(s)	125
AlwNI	CAGNNNCTG	1 cut(s)	196
ApeKI	GCWGC	2 cut(s)	273, 313
ApoI	RAATTY	2 cut(s)	145, 170
AspLEI	GCGC	1 cut(s)	120
BanII	GRGCYC	1 cut(s)	303
BbvI	GCAGC	2 cut(s)	260, 325
BccI	CCATC	1 cut(s)	338
BciT130I	CCWGG	1 cut(s)	375
BcoDI	GTCTC	1 cut(s)	343
BfaI	CTAG	2 cut(s)	206, 381
BfmI	CTRYAG	1 cut(s)	333
BfoI	RGCGCY	1 cut(s)	121
BisI	GCNGC	2 cut(s)	274, 314
BlsI	GCNGC	2 cut(s)	275, 315
Bme1390I	CCNGG	1 cut(s)	375
BmrFI	CCNGG	1 cut(s)	375
BmsI	GCATC	1 cut(s)	253
Bpu10I	CCTNAGC	1 cut(s)	308
BpuEI	CTTGAG	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	375
BseGI	GGATG	3 cut(s)	258, 301, 349
BseLI	CCNNNNNNNGG	1 cut(s)	309
BseXI	GCAGC	2 cut(s)	260, 325
BsgI	GTGCAG	1 cut(s)	313
BslI	CCNNNNNNNGG	1 cut(s)	309
BsmAI	GTCTC	1 cut(s)	343
BsmI	GAATGC	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	1 cut(s)	130
BspHI	TCATGA	1 cut(s)	366
BspMAI	CTGCAG	1 cut(s)	337
BspPI	GGATC	1 cut(s)	125
BssMI	GATC	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	375
BstC8I	GCNNGC	2 cut(s)	80, 278
BstDEI	CTNAG	2 cut(s)	24, 308
BstENI	CCTNNNNNAGG	1 cut(s)	307
BstF5I	GGATG	3 cut(s)	258, 301, 349
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	1 cut(s)	133
BstMAI	GTCTC	1 cut(s)	343
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstNI	CCWGG	1 cut(s)	375
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	373
BstSFI	CTRYAG	1 cut(s)	333
BstV1I	GCAGC	2 cut(s)	260, 325
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BtgZI	GCGATG	1 cut(s)	281
BtsCI	GGATG	3 cut(s)	258, 301, 349
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	2 cut(s)	80, 278
CaiI	CAGNNNCTG	1 cut(s)	196
CciI	TCATGA	1 cut(s)	366
CfoI	GCGC	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	5 cut(s)	95, 142, 277, 292, 367
CviJI	RGCY	5 cut(s)	78, 196, 225, 301, 316
CviKI_1	RGCY	5 cut(s)	78, 196, 225, 301, 316
CviQI	GTAC	1 cut(s)	89
DdeI	CTNAG	2 cut(s)	24, 308
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	303
Eco57I	CTGAAG	2 cut(s)	218, 226
EcoNI	CCTNNNNNAGG	1 cut(s)	307
EcoRI	GAATTC	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	303
FaeI	CATG	5 cut(s)	98, 145, 280, 295, 370
FaiI	YATR	8 cut(s)	42, 96, 105, 143, 248, 278, 293, 368
FatI	CATG	5 cut(s)	94, 141, 276, 291, 366
Fnu4HI	GCNGC	2 cut(s)	274, 314
FokI	GGATG	3 cut(s)	265, 308, 356
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	2 cut(s)	274, 314
FspBI	CTAG	2 cut(s)	206, 381
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	2 cut(s)	274, 314
HaeII	RGCGCY	1 cut(s)	121
HhaI	GCGC	1 cut(s)	120
Hin1II	CATG	5 cut(s)	98, 145, 280, 295, 370
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HindIII	AAGCTT	2 cut(s)	76, 223
HinfI	GANTC	2 cut(s)	348, 370
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	3 cut(s)	130, 192, 343
Hpy188III	TCNNGA	1 cut(s)	367
Hpy8I	GTNNAC	1 cut(s)	89
HpyCH4V	TGCA	3 cut(s)	276, 330, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	2 cut(s)	24, 308
Hsp92II	CATG	5 cut(s)	98, 145, 280, 295, 370
HspAI	GCGC	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	130
LpnPI	CCDG	3 cut(s)	360, 375, 387
Lsp1109I	GCAGC	2 cut(s)	260, 325
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	2 cut(s)	206, 381
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	2 cut(s)	147, 211
MflI	RGATCY	1 cut(s)	130
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	2 cut(s)	145, 170
MnlI	CCTC	1 cut(s)	243
MslI	CAYNNNNRTG	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	375
Mva1269I	GAATGC	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	375
MwoI	GCNNNNNNNGC	1 cut(s)	313
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	5 cut(s)	98, 145, 280, 295, 370
NspI	RCATGY	1 cut(s)	280
PaeI	GCATGC	1 cut(s)	280
PagI	TCATGA	1 cut(s)	366
PctI	GAATGC	1 cut(s)	186
PfeI	GAWTC	2 cut(s)	348, 370
PkrI	GCNGC	2 cut(s)	275, 315
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PstI	CTGCAG	1 cut(s)	337
PstNI	CAGNNNCTG	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	130
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	281
SatI	GCNGC	2 cut(s)	274, 314
Sau3AI	GATC	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	375
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	5 cut(s)	80, 198, 217, 227, 318
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	1 cut(s)	333
SmiMI	CAYNNNNRTG	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
SphI	GCATGC	1 cut(s)	280
Sse9I	AATT	2 cut(s)	145, 170
SspMI	CTAG	2 cut(s)	206, 381
StyD4I	CCNGG	1 cut(s)	373
TaqI	TCGA	1 cut(s)	174
TasI	AATT	2 cut(s)	145, 170
TfiI	GAWTC	2 cut(s)	348, 370
TscAI	CASTG	1 cut(s)	337
TseI	GCWGC	2 cut(s)	273, 313
TspDTI	ATGAA	2 cut(s)	151, 158
TspRI	CASTG	1 cut(s)	337
XagI	CCTNNNNNAGG	1 cut(s)	307
XapI	RAATTY	2 cut(s)	145, 170
XceI	RCATGY	1 cut(s)	280
XspI	CTAG	2 cut(s)	206, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.