Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0025563

Physical Location & Seq

Genomic Coordinates Reverse (-)

48115056 .. 48116420

Gene Structure 1365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG332900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCTGAGTGCAATATCAAAAGAAGAGTTCCTCTTCCTTGTTAAGAAGTATTATGATGTTCTCATTGTTGCACTACTGTTTTCTATCGGAGTTGCATTTTTCGTCTCTAAATTAGCATGGAGAAAGGTCACAGGTTCCAGAGGTCACATCCCTGGCCGGTTGGGGTTACCCTTTATAGGTGAAACCATTTCTTTTATGTCAGCAACCAATAGCACAAGAGGATGCTATGATTTTATCAGATTCCGGCGACTATGGTATGGGAAGTGGTTCAAGACGAGAATTTTTGGCAAGATCCATGTGTTTGTTCCAAGTACAGAGGGTGCAAAAATGATTTTTTCTAATGATTTTGCTAAGTTCAACAAAGGATATGTGAAATCAATGGCAGATTGTATTGGAGATAAAAGCTTGCTCTGTGTACCACATGAGAACCATAAAAGAATAAGGCGCTTATTATCAGATCCTTTCTCCATGAATTCTTTATCTTCGTTCATTGAGAAATTCGATCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

169

Amino Acids

19.49

Weight (kDa)

10.01

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0025563)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8157436.1_g000001 Rmu_sc0003465.1_g000044
rosa_samantha	Rh2AG332900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	286, 452
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	3 cut(s)	279, 472, 497
AfaI	GTAC	2 cut(s)	313, 417
AfiI	CCNNNNNNNGG	1 cut(s)	176
AgsI	TTSAA	2 cut(s)	271, 358
AjnI	CCWGG	1 cut(s)	151
AluBI	AGCT	1 cut(s)	405
AluI	AGCT	1 cut(s)	405
Alw26I	GTCTC	1 cut(s)	109
AlwI	GGATC	2 cut(s)	286, 452
AoxI	GGCC	1 cut(s)	154
ApoI	RAATTY	3 cut(s)	279, 472, 497
Asp700I	GAANNNNTTC	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	447
AsuHPI	GGTGA	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	109
BfoI	RGCGCY	1 cut(s)	448
Bme1390I	CCNGG	1 cut(s)	153
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	153
BmsI	GCATC	1 cut(s)	212
Bsa29I	ATCGAT	1 cut(s)	505
BsaJI	CCNNGG	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse118I	RCCGGY	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	153
BseCI	ATCGAT	1 cut(s)	505
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	2 cut(s)	147, 227
BseLI	CCNNNNNNNGG	1 cut(s)	176
Bsh1285I	CGRYCG	1 cut(s)	505
BshFI	GGCC	1 cut(s)	156
BshVI	ATCGAT	1 cut(s)	505
BsiEI	CGRYCG	1 cut(s)	505
BsiSI	CCGG	2 cut(s)	157, 244
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmAI	GTCTC	1 cut(s)	109
BsmBI	CGTCTC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	156
Bsp143I	GATC	3 cut(s)	291, 457, 502
BspANI	GGCC	1 cut(s)	156
BspDI	ATCGAT	1 cut(s)	505
BspLI	GGNNCC	1 cut(s)	136
BspPI	GGATC	2 cut(s)	286, 452
BsrFI	RCCGGY	1 cut(s)	156
BssAI	RCCGGY	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	3 cut(s)	291, 457, 502
Bst2UI	CCWGG	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	78
Bst6I	CTCTTC	2 cut(s)	18, 38
BstC8I	GCNNGC	1 cut(s)	407
BstDEI	CTNAG	2 cut(s)	5, 351
BstEII	GGTNACC	1 cut(s)	165
BstF5I	GGATG	2 cut(s)	147, 227
BstH2I	RGCGCY	1 cut(s)	448
BstHHI	GCGC	1 cut(s)	447
BstKTI	GATC	3 cut(s)	294, 460, 505
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	3 cut(s)	291, 457, 502
BstMCI	CGRYCG	1 cut(s)	505
BstNI	CCWGG	1 cut(s)	153
BstPI	GGTNACC	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	151
BstX2I	RGATCY	2 cut(s)	291, 457
BstYI	RGATCY	2 cut(s)	291, 457
Bsu15I	ATCGAT	1 cut(s)	505
BsuRI	GGCC	1 cut(s)	156
BsuTUI	ATCGAT	1 cut(s)	505
BtsCI	GGATG	2 cut(s)	147, 227
Cac8I	GCNNGC	1 cut(s)	407
CfoI	GCGC	1 cut(s)	447
Cfr10I	RCCGGY	1 cut(s)	156
ClaI	ATCGAT	1 cut(s)	505
Csp6I	GTAC	2 cut(s)	312, 416
CviAII	CATG	4 cut(s)	117, 296, 422, 469
CviJI	RGCY	2 cut(s)	156, 405
CviKI_1	RGCY	2 cut(s)	156, 405
CviQI	GTAC	2 cut(s)	312, 416
DdeI	CTNAG	2 cut(s)	5, 351
DpnI	GATC	3 cut(s)	293, 459, 504
DpnII	GATC	3 cut(s)	291, 457, 502
EaeI	YGGCCR	1 cut(s)	154
Eam1104I	CTCTTC	2 cut(s)	18, 38
EarI	CTCTTC	2 cut(s)	18, 38
Eco91I	GGTNACC	1 cut(s)	165
EcoO65I	GGTNACC	1 cut(s)	165
EcoRI	GAATTC	1 cut(s)	472
EcoRII	CCWGG	1 cut(s)	151
Esp3I	CGTCTC	1 cut(s)	109
FaeI	CATG	4 cut(s)	120, 299, 425, 472
FatI	CATG	4 cut(s)	116, 295, 421, 468
FokI	GGATG	2 cut(s)	134, 234
GlaI	GCGC	1 cut(s)	446
HaeII	RGCGCY	1 cut(s)	448
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	2 cut(s)	157, 244
HhaI	GCGC	1 cut(s)	447
Hin1II	CATG	4 cut(s)	120, 299, 425, 472
Hin6I	GCGC	1 cut(s)	445
HinP1I	GCGC	1 cut(s)	445
HindIII	AAGCTT	1 cut(s)	403
HinfI	GANTC	1 cut(s)	240
HpaII	CCGG	2 cut(s)	157, 244
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	1 cut(s)	416
Hpy188I	TCNGA	3 cut(s)	89, 239, 457
Hpy188III	TCNNGA	2 cut(s)	138, 271
Hpy8I	GTNNAC	1 cut(s)	416
HpyCH4III	ACNGT	1 cut(s)	78
HpyCH4V	TGCA	4 cut(s)	11, 71, 95, 323
HpyF3I	CTNAG	2 cut(s)	5, 351
Hsp92II	CATG	4 cut(s)	120, 299, 425, 472
HspAI	GCGC	1 cut(s)	445
Kzo9I	GATC	3 cut(s)	291, 457, 502
LpnPI	CCDG	6 cut(s)	117, 138, 151, 165, 170, 257
LweI	GCATC	1 cut(s)	212
MaeIII	GTNAC	3 cut(s)	127, 143, 165
MalI	GATC	3 cut(s)	293, 459, 504
MboI	GATC	3 cut(s)	291, 457, 502
MboII	GAAGA	3 cut(s)	25, 35, 474
MflI	RGATCY	2 cut(s)	291, 457
MluCI	AATT	4 cut(s)	110, 279, 472, 497
MnlI	CCTC	4 cut(s)	41, 134, 212, 310
MroXI	GAANNNNTTC	1 cut(s)	266
MseI	TTAA	1 cut(s)	42
MspI	CCGG	2 cut(s)	157, 244
MspR9I	CCNGG	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	153
NdeII	GATC	3 cut(s)	291, 457, 502
NlaIII	CATG	4 cut(s)	120, 299, 425, 472
NlaIV	GGNNCC	1 cut(s)	136
NmuCI	GTSAC	2 cut(s)	127, 143
PdmI	GAANNNNTTC	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	240
Ple19I	CGATCG	1 cut(s)	505
Psp6I	CCWGG	1 cut(s)	151
PspEI	GGTNACC	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	136
PsuI	RGATCY	2 cut(s)	291, 457
PvuI	CGATCG	1 cut(s)	505
RsaI	GTAC	2 cut(s)	313, 417
RsaNI	GTAC	2 cut(s)	312, 416
SaqAI	TTAA	1 cut(s)	42
Sau3AI	GATC	3 cut(s)	291, 457, 502
ScrFI	CCNGG	1 cut(s)	153
SetI	ASST	5 cut(s)	129, 136, 145, 181, 407
SfaNI	GCATC	1 cut(s)	212
Sse9I	AATT	4 cut(s)	110, 279, 472, 497
StyD4I	CCNGG	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	78
TaqI	TCGA	2 cut(s)	501, 505
TasI	AATT	4 cut(s)	110, 279, 472, 497
TatI	WGTACW	1 cut(s)	311
TfiI	GAWTC	1 cut(s)	240
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TseFI	GTSAC	2 cut(s)	127, 143
Tsp45I	GTSAC	2 cut(s)	127, 143
TspDTI	ATGAA	2 cut(s)	478, 485
XapI	RAATTY	3 cut(s)	279, 472, 497
XmnI	GAANNNNTTC	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.