Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8166598.1

Orthogroup ID

OG0025610

Physical Location & Seq

Genomic Coordinates Forward (+)

64 .. 668

Gene Structure 605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8166598.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 436 bp

atggcgtcgaagttcgggttggccggcgggattccggagcggcgggtccggcccatttgggacgccatcgattctcgccaattcaaaaacgctctcaagctcgtcaccgctctcctctccaagtttcccaactccccttactgtctggcgcttaaagctctcatcctggaaaggatggggaaatcggaagaagcattgtcgctttgcctcaacgccaaggagcatttgcacaaaaacgactccgttttgatggacgatctcactctcagcaccttgcaaatcgtcttccaacgcctcgatcacttggaaatggcaaccagttgttacgaatatgcttgcggtaaatttccgagcaatttggagctgatgatggggctctttaactgctatgttcgcgaatactcgtttgtcaagcagcaacaggttgctttgcctc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0005911 GO:0006464 GO:0006473 GO:0006474 GO:0006807 GO:0006810 GO:0006897 GO:0006909 GO:0006911 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010324 GO:0010467 GO:0016043 GO:0016192 GO:0017196 GO:0018193 GO:0018206 GO:0019538 GO:0030054 GO:0031248 GO:0031365 GO:0031414 GO:0031416 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051604 GO:0055044 GO:0061024 GO:0071704 GO:0071840 GO:0098657 GO:0099024 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NatB_MDM20

Protein Analysis

145

Amino Acids

16.45

Weight (kDa)

8.27

Isoelectric Point (pI)

46.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025610)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8166598.1_g000001 Rmu_sc0006567.1_g000001
rosa_samantha	Rh5DG499900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	40, 110
AccII	CGCG	1 cut(s)	396
AccIII	TCCGGA	1 cut(s)	34
AciI	CCGC	5 cut(s)	27, 40, 43, 108, 339
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	344
AcyI	GRCGYC	2 cut(s)	5, 63
AgsI	TTSAA	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	165
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AluBI	AGCT	3 cut(s)	100, 158, 364
AluI	AGCT	3 cut(s)	100, 158, 364
Aor13HI	TCCGGA	1 cut(s)	34
AoxI	GGCC	2 cut(s)	21, 50
ApeKI	GCWGC	1 cut(s)	415
ApoI	RAATTY	1 cut(s)	344
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	2 cut(s)	46, 51
AsuHPI	GGTGA	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	378
BbsI	GAAGAC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	4 cut(s)	74, 169, 244, 364
BciT130I	CCWGG	1 cut(s)	167
BfoI	RGCGCY	1 cut(s)	152
BisI	GCNGC	2 cut(s)	41, 416
BlsI	GCNGC	2 cut(s)	42, 417
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	2 cut(s)	46, 51
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	167
BpiI	GAAGAC	1 cut(s)	277
BpuEI	CTTGAG	1 cut(s)	80
Bsa29I	ATCGAT	1 cut(s)	69
BsaHI	GRCGYC	2 cut(s)	5, 63
BsaJI	CCNNGG	1 cut(s)	216
BsaWI	WCCGGW	1 cut(s)	34
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	318
BseAI	TCCGGA	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	167
BseCI	ATCGAT	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	2 cut(s)	162, 180
BseMII	CTCAG	1 cut(s)	280
BseNI	ACTGG	1 cut(s)	318
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	427
Bsh1236I	CGCG	1 cut(s)	396
BshFI	GGCC	2 cut(s)	23, 52
BshVI	ATCGAT	1 cut(s)	69
BsiSI	CCGG	3 cut(s)	24, 35, 49
BslFI	GGGAC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	2 cut(s)	23, 52
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp13I	TCCGGA	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	256, 298
Bsp68I	TCGCGA	1 cut(s)	396
BspACI	CCGC	5 cut(s)	27, 40, 43, 108, 339
BspANI	GGCC	2 cut(s)	23, 52
BspCNI	CTCAG	1 cut(s)	279
BspDI	ATCGAT	1 cut(s)	69
BspEI	TCCGGA	1 cut(s)	34
BspFNI	CGCG	1 cut(s)	396
BspLI	GGNNCC	1 cut(s)	47
BsrBI	CCGCTC	2 cut(s)	40, 110
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	318
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	2 cut(s)	256, 298
BssNI	GRCGYC	2 cut(s)	5, 63
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	143
BstACI	GRCGYC	2 cut(s)	5, 63
BstC8I	GCNNGC	2 cut(s)	25, 337
BstDEI	CTNAG	1 cut(s)	266
BstF5I	GGATG	2 cut(s)	162, 180
BstFNI	CGCG	1 cut(s)	396
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	2 cut(s)	259, 301
BstMBI	GATC	2 cut(s)	256, 298
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 155, 393
BstNI	CCWGG	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	396
BstV1I	GCAGC	1 cut(s)	427
BstV2I	GAAGAC	1 cut(s)	277
Bsu15I	ATCGAT	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	23, 52
BsuTUI	ATCGAT	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	162, 180
BtuMI	TCGCGA	1 cut(s)	396
Cac8I	GCNNGC	2 cut(s)	25, 337
CfoI	GCGC	1 cut(s)	151
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	2 cut(s)	46, 51
ClaI	ATCGAT	1 cut(s)	69
CseI	GACGC	1 cut(s)	71
CviJI	RGCY	6 cut(s)	23, 52, 100, 158, 364, 376
CviKI_1	RGCY	6 cut(s)	23, 52, 100, 158, 364, 376
DdeI	CTNAG	1 cut(s)	266
DpnI	GATC	2 cut(s)	258, 300
DpnII	GATC	2 cut(s)	256, 298
EaeI	YGGCCR	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	378
Eco47I	GGWCC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	216
FaiI	YATR	2 cut(s)	333, 390
FaqI	GGGAC	1 cut(s)	74
FauI	CCCGC	2 cut(s)	20, 36
Fnu4HI	GCNGC	2 cut(s)	41, 416
FokI	GGATG	2 cut(s)	149, 187
FriOI	GRGCYC	1 cut(s)	378
Fsp4HI	GCNGC	2 cut(s)	41, 416
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	2 cut(s)	41, 416
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	2 cut(s)	23, 52
HapII	CCGG	3 cut(s)	24, 35, 49
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	1 cut(s)	151
Hin1I	GRCGYC	2 cut(s)	5, 63
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	3 cut(s)	31, 71, 239
HpaII	CCGG	3 cut(s)	24, 35, 49
HphI	GGTGA	1 cut(s)	97
Hpy188I	TCNGA	2 cut(s)	187, 351
Hpy188III	TCNNGA	2 cut(s)	35, 395
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4V	TGCA	2 cut(s)	229, 277
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 155, 393
HpyF3I	CTNAG	1 cut(s)	266
Hsp92I	GRCGYC	2 cut(s)	5, 63
HspAI	GCGC	1 cut(s)	149
Kpn2I	TCCGGA	1 cut(s)	34
KroI	GCCGGC	1 cut(s)	23
KroNI	GCCGGC	1 cut(s)	25
Kzo9I	GATC	2 cut(s)	256, 298
LmnI	GCTCC	3 cut(s)	37, 220, 361
LpnPI	CCDG	8 cut(s)	37, 48, 62, 131, 152, 179, 331, 407
Lsp1109I	GCAGC	1 cut(s)	427
MaeIII	GTNAC	2 cut(s)	103, 323
MalI	GATC	2 cut(s)	258, 300
MbiI	CCGCTC	2 cut(s)	40, 110
MboI	GATC	2 cut(s)	256, 298
MboII	GAAGA	2 cut(s)	200, 277
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	3 cut(s)	80, 344, 355
MlyI	GAGTC	1 cut(s)	233
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	3 cut(s)	125, 218, 305
MroI	TCCGGA	1 cut(s)	34
MroNI	GCCGGC	1 cut(s)	23
MseI	TTAA	2 cut(s)	153, 381
MspI	CCGG	3 cut(s)	24, 35, 49
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
MvnI	CGCG	1 cut(s)	396
MwoI	GCNNNNNNNGC	3 cut(s)	49, 155, 393
NaeI	GCCGGC	1 cut(s)	25
NdeII	GATC	2 cut(s)	256, 298
NgoMIV	GCCGGC	1 cut(s)	23
NlaIV	GGNNCC	1 cut(s)	47
NmuCI	GTSAC	1 cut(s)	103
NruI	TCGCGA	1 cut(s)	396
PdiI	GCCGGC	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	31, 71
PfoI	TCCNGGA	1 cut(s)	165
PkrI	GCNGC	2 cut(s)	42, 417
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	2 cut(s)	46, 51
RruI	TCGCGA	1 cut(s)	396
SaqAI	TTAA	2 cut(s)	153, 381
SatI	GCNGC	2 cut(s)	41, 416
Sau3AI	GATC	2 cut(s)	256, 298
Sau96I	GGNCC	2 cut(s)	46, 51
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	378
SetI	ASST	5 cut(s)	102, 160, 275, 366, 426
SinI	GGWCC	1 cut(s)	46
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	3 cut(s)	80, 344, 355
SsiI	CCGC	5 cut(s)	27, 40, 43, 108, 339
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	143
TaqI	TCGA	3 cut(s)	8, 69, 297
TasI	AATT	3 cut(s)	80, 344, 355
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	2 cut(s)	31, 71
Tru1I	TTAA	2 cut(s)	153, 381
Tru9I	TTAA	2 cut(s)	153, 381
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	1 cut(s)	415
Tsp45I	GTSAC	1 cut(s)	103
TspGWI	ACGGA	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.