Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0025610

Physical Location & Seq

Genomic Coordinates Reverse (-)

78381023 .. 78388188

Gene Structure 7166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG499900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCGTCGAAGTTCGGATTGGCCGGCGGGATACCGGAGCGGCGGGTCCGGCCCATTTGGGACGCCATCGATCCTCGCCAATTCAAAAACGCTCTCAAGCTCGTCACCGCTCTCCTCTCCAAGTTTCCCAATTCCCCTTACTGTCTGGCGCTTAAAGCTCTCATCCTGGAAAGGATGGGGAAATCGGAAGAAGCATTGTCGCTTTGCCTCAACGCCAAGGAGCAGTTGCACAAAAACGACTCCGTTTTGATGGACGATCTCACTCTCAGCACCTTGCAAATCGTCTTCCAACGCCTCGATCACCATGGGTACAACTGTACAAGTAGCACAGAATCATTTCATGATCAGATTTGTCCCGGAGACAATGTGGCAGCCGTTGGCCGATATTTTAAGGACTCCTATAGCCCTATGGCTGCTCCTGGTACATTCAGTTTCGAATTCTCGATTTCTGTGATTTTGATAGTAAAGAGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0005911 GO:0006464 GO:0006473 GO:0006474 GO:0006807 GO:0006810 GO:0006897 GO:0006909 GO:0006911 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010324 GO:0010467 GO:0016043 GO:0016192 GO:0017196 GO:0018193 GO:0018206 GO:0019538 GO:0030054 GO:0031248 GO:0031365 GO:0031414 GO:0031416 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051604 GO:0055044 GO:0061024 GO:0071704 GO:0071840 GO:0098657 GO:0099024 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NatB_MDM20

Protein Analysis

158

Amino Acids

17.59

Weight (kDa)

7.68

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025610)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8166598.1_g000001 Rmu_sc0006567.1_g000001
rosa_samantha	Rh5DG499900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	40, 110
AciI	CCGC	4 cut(s)	27, 40, 43, 108
AclWI	GGATC	1 cut(s)	65
AcoI	YGGCCR	2 cut(s)	21, 379
AcsI	RAATTY	1 cut(s)	437
AcyI	GRCGYC	2 cut(s)	5, 63
AfaI	GTAC	3 cut(s)	311, 319, 424
AgsI	TTSAA	1 cut(s)	85
AjnI	CCWGG	2 cut(s)	165, 418
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AluBI	AGCT	3 cut(s)	100, 158, 471
AluI	AGCT	3 cut(s)	100, 158, 471
Alw26I	GTCTC	1 cut(s)	354
AlwI	GGATC	1 cut(s)	65
AoxI	GGCC	3 cut(s)	21, 50, 379
ApeKI	GCWGC	2 cut(s)	371, 413
ApoI	RAATTY	1 cut(s)	437
Asp700I	GAANNNNTTC	1 cut(s)	336
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	2 cut(s)	46, 51
AsuC2I	CCSGG	1 cut(s)	357
AsuHPI	GGTGA	2 cut(s)	97, 293
AsuII	TTCGAA	1 cut(s)	435
AvaII	GGWCC	1 cut(s)	46
BaeI	ACNNNNGTAYC	2 cut(s)	301, 334
BbsI	GAAGAC	1 cut(s)	277
BbvI	GCAGC	2 cut(s)	383, 400
BccI	CCATC	3 cut(s)	74, 169, 244
BceAI	ACGGC	1 cut(s)	359
BciT130I	CCWGG	2 cut(s)	167, 420
BciVI	GTATCC	1 cut(s)	24
BclI	TGATCA	1 cut(s)	343
BcnI	CCSGG	1 cut(s)	357
BcoDI	GTCTC	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	400
BfoI	RGCGCY	1 cut(s)	152
BfuI	GTATCC	1 cut(s)	24
BisI	GCNGC	3 cut(s)	41, 372, 414
BlsI	GCNGC	3 cut(s)	42, 373, 415
Bme1390I	CCNGG	3 cut(s)	167, 357, 420
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	2 cut(s)	46, 51
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	3 cut(s)	167, 357, 420
BpiI	GAAGAC	1 cut(s)	277
Bpu14I	TTCGAA	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	357
Bsa29I	ATCGAT	1 cut(s)	69
BsaHI	GRCGYC	2 cut(s)	5, 63
BsaJI	CCNNGG	2 cut(s)	216, 304
BsaWI	WCCGGW	1 cut(s)	34
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bse118I	RCCGGY	1 cut(s)	23
BseBI	CCWGG	2 cut(s)	167, 420
BseCI	ATCGAT	1 cut(s)	69
BseDI	CCNNGG	2 cut(s)	216, 304
BseGI	GGATG	2 cut(s)	162, 180
BseMII	CTCAG	1 cut(s)	280
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	2 cut(s)	383, 400
BshFI	GGCC	3 cut(s)	23, 52, 381
BshVI	ATCGAT	1 cut(s)	69
BsiSI	CCGG	4 cut(s)	24, 35, 49, 357
BslFI	GGGAC	2 cut(s)	74, 339
BsmAI	GTCTC	1 cut(s)	354
BsmFI	GGGAC	2 cut(s)	74, 339
BsnI	GGCC	3 cut(s)	23, 52, 381
Bsp119I	TTCGAA	1 cut(s)	435
Bsp1407I	TGTACA	1 cut(s)	317
Bsp143I	GATC	4 cut(s)	70, 256, 298, 343
Bsp19I	CCATGG	1 cut(s)	304
BspACI	CCGC	4 cut(s)	27, 40, 43, 108
BspANI	GGCC	3 cut(s)	23, 52, 381
BspCNI	CTCAG	1 cut(s)	279
BspDI	ATCGAT	1 cut(s)	69
BspHI	TCATGA	1 cut(s)	340
BspLI	GGNNCC	1 cut(s)	47
BspPI	GGATC	1 cut(s)	65
BspT104I	TTCGAA	1 cut(s)	435
BsrBI	CCGCTC	2 cut(s)	40, 110
BsrFI	RCCGGY	1 cut(s)	23
BsrGI	TGTACA	1 cut(s)	317
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	2 cut(s)	216, 304
BssMI	GATC	4 cut(s)	70, 256, 298, 343
BssNI	GRCGYC	2 cut(s)	5, 63
BssT1I	CCWWGG	2 cut(s)	216, 304
Bst2UI	CCWGG	2 cut(s)	167, 420
Bst4CI	ACNGT	2 cut(s)	143, 317
BstACI	GRCGYC	2 cut(s)	5, 63
BstAUI	TGTACA	1 cut(s)	317
BstBI	TTCGAA	1 cut(s)	435
BstC8I	GCNNGC	1 cut(s)	25
BstDEI	CTNAG	1 cut(s)	266
BstDSI	CCRYGG	1 cut(s)	304
BstF5I	GGATG	2 cut(s)	162, 180
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	4 cut(s)	73, 259, 301, 346
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	4 cut(s)	70, 256, 298, 343
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 155
BstNI	CCWGG	2 cut(s)	167, 420
BstSCI	CCNGG	3 cut(s)	165, 355, 418
BstSFI	CTRYAG	1 cut(s)	400
BstV1I	GCAGC	2 cut(s)	383, 400
BstV2I	GAAGAC	1 cut(s)	277
Bsu15I	ATCGAT	1 cut(s)	69
BsuI	GTATCC	1 cut(s)	24
BsuRI	GGCC	3 cut(s)	23, 52, 381
BsuTUI	ATCGAT	1 cut(s)	69
BtgI	CCRYGG	1 cut(s)	304
BtsCI	GGATG	2 cut(s)	162, 180
Cac8I	GCNNGC	1 cut(s)	25
CciI	TCATGA	1 cut(s)	340
CfoI	GCGC	1 cut(s)	151
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	2 cut(s)	46, 51
ClaI	ATCGAT	1 cut(s)	69
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	3 cut(s)	310, 318, 423
CviAII	CATG	2 cut(s)	305, 341
CviJI	RGCY	9 cut(s)	23, 52, 100, 158, 374, 381, 405, 413, 471
CviKI_1	RGCY	9 cut(s)	23, 52, 100, 158, 374, 381, 405, 413, 471
CviQI	GTAC	3 cut(s)	310, 318, 423
DdeI	CTNAG	1 cut(s)	266
DpnI	GATC	4 cut(s)	72, 258, 300, 345
DpnII	GATC	4 cut(s)	70, 256, 298, 343
EaeI	YGGCCR	2 cut(s)	21, 379
Eco130I	CCWWGG	2 cut(s)	216, 304
Eco47I	GGWCC	1 cut(s)	46
EcoRI	GAATTC	1 cut(s)	437
EcoRII	CCWGG	2 cut(s)	165, 418
EcoT14I	CCWWGG	2 cut(s)	216, 304
ErhI	CCWWGG	2 cut(s)	216, 304
FaeI	CATG	2 cut(s)	308, 344
FaiI	YATR	4 cut(s)	306, 342, 402, 410
FaqI	GGGAC	2 cut(s)	74, 339
FatI	CATG	2 cut(s)	304, 340
FauI	CCCGC	2 cut(s)	20, 36
FbaI	TGATCA	1 cut(s)	343
Fnu4HI	GCNGC	3 cut(s)	41, 372, 414
FokI	GGATG	2 cut(s)	149, 187
Fsp4HI	GCNGC	3 cut(s)	41, 372, 414
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	3 cut(s)	41, 372, 414
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	3 cut(s)	23, 52, 381
HapII	CCGG	4 cut(s)	24, 35, 49, 357
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	1 cut(s)	151
Hin1I	GRCGYC	2 cut(s)	5, 63
Hin1II	CATG	2 cut(s)	308, 344
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	3 cut(s)	239, 332, 395
HpaII	CCGG	4 cut(s)	24, 35, 49, 357
HphI	GGTGA	2 cut(s)	97, 293
Hpy188I	TCNGA	3 cut(s)	17, 187, 348
Hpy188III	TCNNGA	2 cut(s)	341, 442
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4III	ACNGT	2 cut(s)	143, 317
HpyCH4V	TGCA	2 cut(s)	229, 277
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 155
HpyF3I	CTNAG	1 cut(s)	266
Hsp92I	GRCGYC	2 cut(s)	5, 63
Hsp92II	CATG	2 cut(s)	308, 344
HspAI	GCGC	1 cut(s)	149
KroI	GCCGGC	1 cut(s)	23
KroNI	GCCGGC	1 cut(s)	25
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	4 cut(s)	70, 256, 298, 343
LmnI	GCTCC	3 cut(s)	37, 220, 421
LpnPI	CCDG	9 cut(s)	37, 48, 62, 131, 152, 179, 370, 405, 432
Lsp1109I	GCAGC	2 cut(s)	383, 400
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	4 cut(s)	72, 258, 300, 345
MbiI	CCGCTC	2 cut(s)	40, 110
MboI	GATC	4 cut(s)	70, 256, 298, 343
MboII	GAAGA	2 cut(s)	200, 277
MluCI	AATT	3 cut(s)	80, 130, 437
MlyI	GAGTC	2 cut(s)	233, 389
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	4 cut(s)	84, 125, 218, 305
MroNI	GCCGGC	1 cut(s)	23
MroXI	GAANNNNTTC	1 cut(s)	336
MseI	TTAA	2 cut(s)	153, 390
MspI	CCGG	4 cut(s)	24, 35, 49, 357
MspR9I	CCNGG	3 cut(s)	167, 357, 420
MvaI	CCWGG	2 cut(s)	167, 420
MwoI	GCNNNNNNNGC	2 cut(s)	49, 155
NaeI	GCCGGC	1 cut(s)	25
NciI	CCSGG	1 cut(s)	357
NcoI	CCATGG	1 cut(s)	304
NdeII	GATC	4 cut(s)	70, 256, 298, 343
NgoMIV	GCCGGC	1 cut(s)	23
NlaIII	CATG	2 cut(s)	308, 344
NlaIV	GGNNCC	1 cut(s)	47
NmuCI	GTSAC	1 cut(s)	103
NspV	TTCGAA	1 cut(s)	435
PagI	TCATGA	1 cut(s)	340
PdiI	GCCGGC	1 cut(s)	25
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	332
PfoI	TCCNGGA	2 cut(s)	165, 355
PkrI	GCNGC	3 cut(s)	42, 373, 415
PleI	GAGTC	2 cut(s)	233, 389
PpsI	GAGTC	2 cut(s)	233, 389
Psp6I	CCWGG	2 cut(s)	165, 418
PspGI	CCWGG	2 cut(s)	165, 418
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	2 cut(s)	46, 51
RsaI	GTAC	3 cut(s)	311, 319, 424
RsaNI	GTAC	3 cut(s)	310, 318, 423
SaqAI	TTAA	2 cut(s)	153, 390
SatI	GCNGC	3 cut(s)	41, 372, 414
Sau3AI	GATC	4 cut(s)	70, 256, 298, 343
Sau96I	GGNCC	2 cut(s)	46, 51
SchI	GAGTC	2 cut(s)	233, 389
ScrFI	CCNGG	3 cut(s)	167, 357, 420
SetI	ASST	4 cut(s)	102, 160, 275, 473
SfcI	CTRYAG	1 cut(s)	400
SfuI	TTCGAA	1 cut(s)	435
SinI	GGWCC	1 cut(s)	46
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	3 cut(s)	80, 130, 437
SsiI	CCGC	4 cut(s)	27, 40, 43, 108
StyD4I	CCNGG	3 cut(s)	165, 355, 418
StyI	CCWWGG	2 cut(s)	216, 304
TaaI	ACNGT	2 cut(s)	143, 317
TaqI	TCGA	5 cut(s)	8, 69, 297, 435, 443
TasI	AATT	3 cut(s)	80, 130, 437
TatI	WGTACW	1 cut(s)	317
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	2 cut(s)	153, 390
Tru9I	TTAA	2 cut(s)	153, 390
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	2 cut(s)	371, 413
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	1 cut(s)	329
TspGWI	ACGGA	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	1 cut(s)	437
XmnI	GAANNNNTTC	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.