Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8171598.1

Orthogroup ID

OG0031652

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 639

Gene Structure 638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8171598.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 458 bp

atggctgcgctcatcaataaaattaaccgttcctccatttctcctcttccaattgtgtattcttccacactgaaacaaattatcaagagcatgctcaggaagagtcccgaacatagaccaacagctgcagagttattaaggcatccacacttacaaccatacctccttcaatgccgcaatgcatcatctgtttttcttccagtatttcctataaacaacttgaaagataaaactacaaggaaatcaccatctagcaagcccattggtggcaaggacagccgagacaaagaagctgcaacacctaagcacttggaaaaggttcatccattcgagaccagacctgatgctatgcagagatattcaataaacattgccaaccctgtattcacagctagtactgaagaaaagcttgaaaccaagagagttgatcctagtagctgtactgtggaaccatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

152

Amino Acids

17.04

Weight (kDa)

9.86

Isoelectric Point (pI)

63.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031652)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8171598.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	175
AclWI	GGATC	1 cut(s)	422
AcuI	CTGAAG	1 cut(s)	420
AfaI	GTAC	2 cut(s)	397, 442
AfiI	CCNNNNNNNGG	1 cut(s)	266
AgsI	TTSAA	4 cut(s)	170, 223, 363, 413
AjuI	GAANNNNNNNTTGG	4 cut(s)	43, 75, 368, 400
AluBI	AGCT	5 cut(s)	125, 293, 392, 409, 438
AluI	AGCT	5 cut(s)	125, 293, 392, 409, 438
Alw26I	GTCTC	2 cut(s)	276, 326
AlwI	GGATC	1 cut(s)	422
ApeKI	GCWGC	3 cut(s)	5, 125, 293
Asp700I	GAANNNNTTC	1 cut(s)	318
AspLEI	GCGC	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	112, 280
BccI	CCATC	1 cut(s)	256
BcoDI	GTCTC	2 cut(s)	276, 326
BfaI	CTAG	3 cut(s)	252, 393, 432
BfmI	CTRYAG	1 cut(s)	126
BisI	GCNGC	4 cut(s)	6, 126, 175, 294
BlsI	GCNGC	4 cut(s)	7, 127, 176, 295
BmcAI	AGTACT	1 cut(s)	397
BmiI	GGNNCC	1 cut(s)	450
BmsI	GCATC	3 cut(s)	151, 191, 334
Bpu10I	CCTNAGC	2 cut(s)	95, 303
BsaI	GGTCTC	1 cut(s)	326
BsaXI	ACNNNNNCTCC	4 cut(s)	17, 47, 147, 177
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse1I	ACTGG	1 cut(s)	200
Bse3DI	GCAATG	2 cut(s)	184, 369
BseGI	GGATG	2 cut(s)	142, 322
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMI	GCAATG	2 cut(s)	184, 369
BseMII	CTCAG	1 cut(s)	109
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	2 cut(s)	112, 280
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmAI	GTCTC	2 cut(s)	276, 326
BsmFI	GGGAC	1 cut(s)	90
Bso31I	GGTCTC	1 cut(s)	326
Bsp143I	GATC	1 cut(s)	427
BspACI	CCGC	1 cut(s)	175
BspCNI	CTCAG	1 cut(s)	108
BspLI	GGNNCC	1 cut(s)	450
BspMAI	CTGCAG	1 cut(s)	130
BspPI	GGATC	1 cut(s)	422
BspTNI	GGTCTC	1 cut(s)	326
BsrDI	GCAATG	2 cut(s)	184, 369
BsrI	ACTGG	1 cut(s)	200
BssMI	GATC	1 cut(s)	427
Bst4CI	ACNGT	2 cut(s)	29, 445
Bst6I	CTCTTC	2 cut(s)	51, 95
BstC8I	GCNNGC	2 cut(s)	92, 257
BstDEI	CTNAG	2 cut(s)	95, 303
BstF5I	GGATG	2 cut(s)	142, 322
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	1 cut(s)	430
BstMAI	GTCTC	2 cut(s)	276, 326
BstMBI	GATC	1 cut(s)	427
BstMWI	GCNNNNNNNGC	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	94
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	112, 280
BtsCI	GGATG	2 cut(s)	142, 322
BtsIMutI	CAGTG	1 cut(s)	68
Cac8I	GCNNGC	2 cut(s)	92, 257
CfoI	GCGC	1 cut(s)	10
Csp6I	GTAC	2 cut(s)	396, 441
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	8 cut(s)	5, 125, 259, 279, 293, 392, 409, 438
CviKI_1	RGCY	8 cut(s)	5, 125, 259, 279, 293, 392, 409, 438
CviQI	GTAC	2 cut(s)	396, 441
DdeI	CTNAG	2 cut(s)	95, 303
DpnI	GATC	1 cut(s)	429
DpnII	GATC	1 cut(s)	427
Eam1104I	CTCTTC	2 cut(s)	51, 95
EarI	CTCTTC	2 cut(s)	51, 95
Eco31I	GGTCTC	1 cut(s)	326
Eco57I	CTGAAG	1 cut(s)	420
EcoT22I	ATGCAT	1 cut(s)	184
FaeI	CATG	1 cut(s)	94
FaiI	YATR	5 cut(s)	92, 114, 160, 212, 350
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	1 cut(s)	90
Fnu4HI	GCNGC	4 cut(s)	6, 126, 175, 294
FokI	GGATG	2 cut(s)	129, 309
Fsp4HI	GCNGC	4 cut(s)	6, 126, 175, 294
FspBI	CTAG	3 cut(s)	252, 393, 432
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	4 cut(s)	6, 126, 175, 294
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	1 cut(s)	94
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	1 cut(s)	103
HphI	GGTGA	1 cut(s)	237
Hpy188III	TCNNGA	4 cut(s)	85, 97, 107, 331
HpyAV	CCTTC	1 cut(s)	176
HpyCH4III	ACNGT	2 cut(s)	29, 445
HpyCH4V	TGCA	4 cut(s)	128, 182, 296, 352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	276
HpyF3I	CTNAG	2 cut(s)	95, 303
Hsp92II	CATG	1 cut(s)	94
HspAI	GCGC	1 cut(s)	8
Kzo9I	GATC	1 cut(s)	427
LpnPI	CCDG	5 cut(s)	82, 213, 349, 354, 393
Lsp1109I	GCAGC	2 cut(s)	112, 280
LweI	GCATC	3 cut(s)	151, 191, 334
MaeI	CTAG	3 cut(s)	252, 393, 432
MalI	GATC	1 cut(s)	429
MboI	GATC	1 cut(s)	427
MboII	GAAGA	5 cut(s)	38, 54, 112, 188, 413
MfeI	CAATTG	1 cut(s)	51
MluCI	AATT	3 cut(s)	21, 51, 78
MlyI	GAGTC	1 cut(s)	112
MnlI	CCTC	3 cut(s)	43, 54, 173
Mph1103I	ATGCAT	1 cut(s)	184
MroXI	GAANNNNTTC	1 cut(s)	318
MseI	TTAA	2 cut(s)	24, 137
MspA1I	CMGCKG	1 cut(s)	125
MunI	CAATTG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	276
NdeII	GATC	1 cut(s)	427
NlaIII	CATG	1 cut(s)	94
NlaIV	GGNNCC	1 cut(s)	450
NmeAIII	GCCGAG	1 cut(s)	305
NsiI	ATGCAT	1 cut(s)	184
NspI	RCATGY	1 cut(s)	94
PaeI	GCATGC	1 cut(s)	94
PdmI	GAANNNNTTC	1 cut(s)	318
PkrI	GCNGC	4 cut(s)	7, 127, 176, 295
PleI	GAGTC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	111
PspN4I	GGNNCC	1 cut(s)	450
PstI	CTGCAG	1 cut(s)	130
PvuII	CAGCTG	1 cut(s)	125
RsaI	GTAC	2 cut(s)	397, 442
RsaNI	GTAC	2 cut(s)	396, 441
SaqAI	TTAA	2 cut(s)	24, 137
SatI	GCNGC	4 cut(s)	6, 126, 175, 294
Sau3AI	GATC	1 cut(s)	427
ScaI	AGTACT	1 cut(s)	397
SchI	GAGTC	1 cut(s)	112
SetI	ASST	9 cut(s)	127, 165, 295, 304, 321, 343, 394, 411, 440
SfaNI	GCATC	3 cut(s)	151, 191, 334
SfcI	CTRYAG	1 cut(s)	126
SphI	GCATGC	1 cut(s)	94
Sse9I	AATT	3 cut(s)	21, 51, 78
SsiI	CCGC	1 cut(s)	175
SspMI	CTAG	3 cut(s)	252, 393, 432
TaaI	ACNGT	2 cut(s)	29, 445
TaqI	TCGA	1 cut(s)	330
TasI	AATT	3 cut(s)	21, 51, 78
TatI	WGTACW	2 cut(s)	395, 440
TauI	GCSGC	1 cut(s)	177
Tru1I	TTAA	2 cut(s)	24, 137
Tru9I	TTAA	2 cut(s)	24, 137
TscAI	CASTG	1 cut(s)	75
TseI	GCWGC	3 cut(s)	5, 125, 293
TspDTI	ATGAA	1 cut(s)	311
TspRI	CASTG	1 cut(s)	75
XceI	RCATGY	1 cut(s)	94
XmnI	GAANNNNTTC	1 cut(s)	318
XspI	CTAG	3 cut(s)	252, 393, 432
ZrmI	AGTACT	1 cut(s)	397
Zsp2I	ATGCAT	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.