Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8188986.1

Orthogroup ID

OG0031319

Physical Location & Seq

Genomic Coordinates Reverse (-)

115 .. 654

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8188986.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgacggcagacaccaacgcccgcgccgccgccgacggctgctgcaaccccgtcaagaagtccgggcccatcagcatggatcacgttcttctagctctgcgcgagaccaaggaggagagggagctcaggattcggagcctcttcaatttcttcgactctgccaatctgggttacttggactatgctcagatcgaggccgggctctcggcgcttcagattccgcccgagtataagtacgcaaaggatttgctcaaggtttgtgatgctgatagggatggaagggtcaattaccacgagtttcgacagtatatggatgacaaggagctggagctgtaccgcattttccaggccattgatgtggagcacaatggctgcattctgccggaggagctctgggaggcgctcgtcaaggctggtatgcccataagtgcattgcttgtttgtttctatgttgctatgttggttagtagcttgtgcatgtctaaatatgctgtgatagtttctaatttcgacaatgacggctcgactatgttttcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006950 GO:0006979 GO:0008150 GO:0008509 GO:0008514 GO:0009987 GO:0010035 GO:0010038 GO:0010941 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0034220 GO:0034599 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0051592 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071277 GO:0071702 GO:0071705 GO:0098656 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_5 EF-hand_7 EF-hand_8 Mito_carr

Protein Analysis

179

Amino Acids

20.21

Weight (kDa)

4.8

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031319)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8188986.1_g000001 Rmu_sc0004806.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	24, 102
AciI	CCGC	5 cut(s)	22, 27, 30, 221, 337
AclWI	GGATC	1 cut(s)	87
AcuI	CTGAAG	1 cut(s)	197
AfaI	GTAC	2 cut(s)	236, 335
AgsI	TTSAA	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	345
AluBI	AGCT	6 cut(s)	95, 124, 325, 331, 391, 471
AluI	AGCT	6 cut(s)	95, 124, 325, 331, 391, 471
Alw21I	GWGCWC	3 cut(s)	126, 366, 393
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	1 cut(s)	87
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	3 cut(s)	65, 195, 348
ApaI	GGGCCC	1 cut(s)	69
ApeKI	GCWGC	3 cut(s)	39, 42, 372
ArsI	GACNNNNNNTTYG	1 cut(s)	517
AspLEI	GCGC	4 cut(s)	26, 102, 211, 403
AspS9I	GGNCC	2 cut(s)	65, 66
AsuC2I	CCSGG	2 cut(s)	64, 199
AvaI	CYCGRG	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	69
BanII	GRGCYC	4 cut(s)	69, 126, 204, 393
BauI	CACGAG	1 cut(s)	293
Bbv12I	GWGCWC	3 cut(s)	126, 366, 393
BbvI	GCAGC	3 cut(s)	26, 29, 359
BccI	CCATC	2 cut(s)	77, 269
BceAI	ACGGC	3 cut(s)	21, 52, 535
BciT130I	CCWGG	1 cut(s)	347
BcnI	CCSGG	2 cut(s)	64, 199
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	1 cut(s)	92
BfoI	RGCGCY	2 cut(s)	212, 404
BisI	GCNGC	5 cut(s)	27, 30, 40, 43, 373
BlsI	GCNGC	5 cut(s)	28, 31, 41, 44, 374
Bme1390I	CCNGG	3 cut(s)	64, 199, 347
BmeT110I	CYCGRG	1 cut(s)	224
BmgT120I	GGNCC	2 cut(s)	65, 66
BmiI	GGNNCC	2 cut(s)	67, 137
BmrFI	CCNGG	3 cut(s)	64, 199, 347
BmsI	GCATC	1 cut(s)	253
BpmI	CTGGAG	1 cut(s)	347
Bpu10I	CCTNAGC	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	2 cut(s)	64, 199
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	431
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	2 cut(s)	280, 319
BseMI	GCAATG	1 cut(s)	431
BseMII	CTCAG	2 cut(s)	139, 200
BseRI	GAGGAG	2 cut(s)	128, 401
BseSI	GKGCMC	1 cut(s)	69
BseXI	GCAGC	3 cut(s)	26, 29, 359
Bsh1236I	CGCG	2 cut(s)	24, 102
BshFI	GGCC	3 cut(s)	67, 197, 350
BsiHKAI	GWGCWC	3 cut(s)	126, 366, 393
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	3 cut(s)	63, 198, 383
BsmAI	GTCTC	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	375
BsnI	GGCC	3 cut(s)	67, 197, 350
Bso31I	GGTCTC	1 cut(s)	98
BsoBI	CYCGRG	1 cut(s)	224
Bsp120I	GGGCCC	1 cut(s)	65
Bsp1286I	GDGCHC	5 cut(s)	69, 126, 204, 366, 393
Bsp143I	GATC	2 cut(s)	79, 189
BspACI	CCGC	5 cut(s)	22, 27, 30, 221, 337
BspANI	GGCC	3 cut(s)	67, 197, 350
BspCNI	CTCAG	2 cut(s)	138, 199
BspFNI	CGCG	2 cut(s)	24, 102
BspLI	GGNNCC	2 cut(s)	67, 137
BspPI	GGATC	1 cut(s)	87
BspTNI	GGTCTC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	431
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	2 cut(s)	79, 189
BssSI	CACGAG	1 cut(s)	293
BssT1I	CCWWGG	1 cut(s)	108
Bst2BI	CACGAG	1 cut(s)	293
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	1 cut(s)	306
Bst6I	CTCTTC	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	22
BstDEI	CTNAG	2 cut(s)	125, 186
BstF5I	GGATG	2 cut(s)	280, 319
BstFNI	CGCG	2 cut(s)	24, 102
BstH2I	RGCGCY	2 cut(s)	212, 404
BstHHI	GCGC	4 cut(s)	26, 102, 211, 403
BstKTI	GATC	2 cut(s)	82, 192
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	2 cut(s)	79, 189
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 208, 388
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	1 cut(s)	481
BstSCI	CCNGG	3 cut(s)	62, 197, 345
BstSLI	GKGCMC	1 cut(s)	69
BstUI	CGCG	2 cut(s)	24, 102
BstV1I	GCAGC	3 cut(s)	26, 29, 359
BstXI	CCANNNNNNTGG	2 cut(s)	76, 358
BsuRI	GGCC	3 cut(s)	67, 197, 350
BtsCI	GGATG	2 cut(s)	280, 319
Cac8I	GCNNGC	1 cut(s)	22
CfoI	GCGC	4 cut(s)	26, 102, 211, 403
Cfr13I	GGNCC	2 cut(s)	65, 66
Csp6I	GTAC	2 cut(s)	235, 334
CviAII	CATG	2 cut(s)	76, 478
CviQI	GTAC	2 cut(s)	235, 334
DdeI	CTNAG	2 cut(s)	125, 186
DpnI	GATC	2 cut(s)	81, 191
DpnII	GATC	2 cut(s)	79, 189
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
EciI	GGCGGA	1 cut(s)	210
Ecl136II	GAGCTC	2 cut(s)	124, 391
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	4 cut(s)	69, 126, 204, 393
Eco31I	GGTCTC	1 cut(s)	98
Eco53kI	GAGCTC	2 cut(s)	124, 391
Eco57I	CTGAAG	1 cut(s)	197
Eco88I	CYCGRG	1 cut(s)	224
EcoICRI	GAGCTC	2 cut(s)	124, 391
EcoRII	CCWGG	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	4 cut(s)	69, 126, 204, 393
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	2 cut(s)	79, 481
FatI	CATG	2 cut(s)	75, 477
FauI	CCCGC	1 cut(s)	29
Fnu4HI	GCNGC	5 cut(s)	27, 30, 40, 43, 373
FokI	GGATG	2 cut(s)	287, 326
FriOI	GRGCYC	4 cut(s)	69, 126, 204, 393
Fsp4HI	GCNGC	5 cut(s)	27, 30, 40, 43, 373
FspBI	CTAG	1 cut(s)	92
GlaI	GCGC	4 cut(s)	25, 101, 210, 402
GluI	GCNGC	5 cut(s)	27, 30, 40, 43, 373
GsuI	CTGGAG	1 cut(s)	347
HaeII	RGCGCY	2 cut(s)	212, 404
HaeIII	GGCC	3 cut(s)	67, 197, 350
HapII	CCGG	3 cut(s)	63, 198, 383
HhaI	GCGC	4 cut(s)	26, 102, 211, 403
Hin1II	CATG	2 cut(s)	79, 481
Hin6I	GCGC	4 cut(s)	24, 100, 209, 401
HinP1I	GCGC	4 cut(s)	24, 100, 209, 401
HinfI	GANTC	3 cut(s)	130, 155, 217
HpaII	CCGG	3 cut(s)	63, 198, 383
Hpy188I	TCNGA	3 cut(s)	135, 189, 216
Hpy188III	TCNNGA	2 cut(s)	55, 127
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	273
HpyCH4III	ACNGT	1 cut(s)	306
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	4 cut(s)	45, 375, 431, 477
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 208, 388
HpyF3I	CTNAG	2 cut(s)	125, 186
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	79, 481
HspAI	GCGC	4 cut(s)	24, 100, 209, 401
Kzo9I	GATC	2 cut(s)	79, 189
LmnI	GCTCC	6 cut(s)	121, 135, 322, 328, 361, 388
Lsp1109I	GCAGC	3 cut(s)	26, 29, 359
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	2 cut(s)	81, 191
MboI	GATC	2 cut(s)	79, 189
MboII	GAAGA	3 cut(s)	80, 133, 142
MhlI	GDGCHC	5 cut(s)	69, 126, 204, 366, 393
MluCI	AATT	3 cut(s)	145, 286, 505
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	6 cut(s)	106, 111, 149, 187, 379, 391
MslI	CAYNNNNRTG	2 cut(s)	74, 356
MspI	CCGG	3 cut(s)	63, 198, 383
MspR9I	CCNGG	3 cut(s)	64, 199, 347
Mva1269I	GAATGC	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	347
MvnI	CGCG	2 cut(s)	24, 102
MwoI	GCNNNNNNNGC	3 cut(s)	26, 208, 388
NciI	CCSGG	2 cut(s)	64, 199
NdeII	GATC	2 cut(s)	79, 189
NlaIII	CATG	2 cut(s)	79, 481
NlaIV	GGNNCC	2 cut(s)	67, 137
NmeAIII	GCCGAG	1 cut(s)	185
NspI	RCATGY	1 cut(s)	481
PctI	GAATGC	1 cut(s)	375
PfeI	GAWTC	2 cut(s)	130, 217
PkrI	GCNGC	5 cut(s)	28, 31, 41, 44, 374
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
Psp124BI	GAGCTC	2 cut(s)	126, 393
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	2 cut(s)	67, 137
PspOMI	GGGCCC	1 cut(s)	65
PspPI	GGNCC	2 cut(s)	65, 66
RsaI	GTAC	2 cut(s)	236, 335
RsaNI	GTAC	2 cut(s)	235, 334
RseI	CAYNNNNRTG	2 cut(s)	74, 356
SacI	GAGCTC	2 cut(s)	126, 393
SatI	GCNGC	5 cut(s)	27, 30, 40, 43, 373
Sau3AI	GATC	2 cut(s)	79, 189
Sau96I	GGNCC	2 cut(s)	65, 66
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	3 cut(s)	64, 199, 347
SduI	GDGCHC	5 cut(s)	69, 126, 204, 366, 393
SetI	ASST	8 cut(s)	87, 97, 126, 258, 327, 333, 393, 473
SfaNI	GCATC	1 cut(s)	253
SmiMI	CAYNNNNRTG	2 cut(s)	74, 356
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	3 cut(s)	145, 286, 505
SsiI	CCGC	5 cut(s)	22, 27, 30, 221, 337
SspMI	CTAG	1 cut(s)	92
SstI	GAGCTC	2 cut(s)	126, 393
StyD4I	CCNGG	3 cut(s)	62, 197, 345
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	306
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	5 cut(s)	153, 192, 301, 510, 524
TasI	AATT	3 cut(s)	145, 286, 505
TauI	GCSGC	2 cut(s)	29, 32
TfiI	GAWTC	2 cut(s)	130, 217
TseI	GCWGC	3 cut(s)	39, 42, 372
XceI	RCATGY	1 cut(s)	481
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.