Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004806.1

Orthogroup ID

OG0031319

Physical Location & Seq

Genomic Coordinates Forward (+)

13627 .. 16581

Gene Structure 2955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004806.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atgtttagagtgcaggggacagctgatctgaggttcccatctgatccctgggatggcatcattgaattagctaatgatttgattcgaggaatgctctgtaaagatccttctaaaaggctcgccgctcaccaagttttaggggcaaagccggccgcggaccatgtcggctttcccatgacggcagacaccaacgcccgcgccgccgccgacggctgctgcaaccccgtcaagaagtccgggcccatcagcatggatcacgttcttctagctctgcgcgagaccaaggaggagagggagctcaggattcggagcctcttcaatttcttcgactctgccaatctgggttacttggactatgctcagatcgaggccgggctctcggcgcttcagattccgcccgagtataagtacgcaaaggatttgctcaaggtttgtgatgctgatagggatggaagggtcaattaccacgagtttcgacagtatatggatgacaaggagctggagctgtaccgcattttccaggccattgatgtggagcacaatggctgcattctgccggaggagctctgggaggcgctcgtcaaggctggtatgcccataagtgcattgcttgtttgtttctatgttgctatgttggttagtagcttgtgcatgtctaaatatgctgtgatagtttctaatttcgacaatgacggctcgactatgttttcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006950 GO:0006979 GO:0008150 GO:0008509 GO:0008514 GO:0009987 GO:0010035 GO:0010038 GO:0010941 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0034220 GO:0034599 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0051592 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071277 GO:0071702 GO:0071705 GO:0098656 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_5 EF-hand_7 EF-hand_8 Mito_carr

Protein Analysis

237

Amino Acids

26.54

Weight (kDa)

5.06

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031319)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8188986.1_g000001 Rmu_sc0004806.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	125
AccII	CGCG	3 cut(s)	155, 198, 276
AciI	CCGC	8 cut(s)	123, 153, 155, 196, 201, 204, 395, 511
AclWI	GGATC	3 cut(s)	38, 98, 261
AcoI	YGGCCR	1 cut(s)	150
AcuI	CTGAAG	1 cut(s)	371
AfaI	GTAC	2 cut(s)	410, 509
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	2 cut(s)	65, 319
AjnI	CCWGG	2 cut(s)	47, 519
AluBI	AGCT	8 cut(s)	23, 71, 269, 298, 499, 505, 565, 645
AluI	AGCT	8 cut(s)	23, 71, 269, 298, 499, 505, 565, 645
Alw21I	GWGCWC	3 cut(s)	300, 540, 567
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	3 cut(s)	38, 98, 261
Ama87I	CYCGRG	1 cut(s)	398
AoxI	GGCC	4 cut(s)	150, 239, 369, 522
ApaI	GGGCCC	1 cut(s)	243
ApeKI	GCWGC	3 cut(s)	213, 216, 546
ArsI	GACNNNNNNTTYG	1 cut(s)	691
AspLEI	GCGC	4 cut(s)	200, 276, 385, 577
AspS9I	GGNCC	3 cut(s)	157, 239, 240
AsuC2I	CCSGG	2 cut(s)	238, 373
AsuHPI	GGTGA	1 cut(s)	119
AvaI	CYCGRG	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	157
BaeGI	GKGCMC	1 cut(s)	243
BanII	GRGCYC	4 cut(s)	243, 300, 378, 567
BarI	GAAGNNNNNNTAC	2 cut(s)	91, 123
BauI	CACGAG	1 cut(s)	467
Bbv12I	GWGCWC	3 cut(s)	300, 540, 567
BbvI	GCAGC	3 cut(s)	200, 203, 533
BccI	CCATC	4 cut(s)	46, 47, 251, 443
BceAI	ACGGC	3 cut(s)	195, 226, 709
BciT130I	CCWGG	2 cut(s)	49, 521
BcnI	CCSGG	2 cut(s)	238, 373
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	1 cut(s)	266
BfoI	RGCGCY	2 cut(s)	386, 578
BisI	GCNGC	7 cut(s)	123, 153, 201, 204, 214, 217, 547
BlsI	GCNGC	7 cut(s)	124, 154, 202, 205, 215, 218, 548
Bme1390I	CCNGG	4 cut(s)	49, 238, 373, 521
Bme18I	GGWCC	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	398
BmgT120I	GGNCC	3 cut(s)	157, 239, 240
BmiI	GGNNCC	3 cut(s)	35, 241, 311
BmrFI	CCNGG	4 cut(s)	49, 238, 373, 521
BmsI	GCATC	2 cut(s)	66, 427
BplI	GAGNNNNNCTC	2 cut(s)	78, 110
BpmI	CTGGAG	1 cut(s)	521
Bpu10I	CCTNAGC	1 cut(s)	299
BpuEI	CTTGAG	1 cut(s)	410
BpuMI	CCSGG	2 cut(s)	238, 373
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	4 cut(s)	47, 48, 153, 282
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse118I	RCCGGY	1 cut(s)	148
Bse3DI	GCAATG	1 cut(s)	605
BseBI	CCWGG	2 cut(s)	49, 521
BseDI	CCNNGG	4 cut(s)	47, 48, 153, 282
BseGI	GGATG	3 cut(s)	58, 454, 493
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMI	GCAATG	1 cut(s)	605
BseMII	CTCAG	3 cut(s)	20, 313, 374
BseRI	GAGGAG	2 cut(s)	302, 575
BseSI	GKGCMC	1 cut(s)	243
BseX3I	CGGCCG	1 cut(s)	150
BseXI	GCAGC	3 cut(s)	200, 203, 533
BsgI	GTGCAG	1 cut(s)	32
Bsh1236I	CGCG	3 cut(s)	155, 198, 276
Bsh1285I	CGRYCG	1 cut(s)	153
BshFI	GGCC	4 cut(s)	152, 241, 371, 524
BsiEI	CGRYCG	1 cut(s)	153
BsiHKAI	GWGCWC	3 cut(s)	300, 540, 567
BsiHKCI	CYCGRG	1 cut(s)	398
BsiSI	CCGG	4 cut(s)	149, 237, 372, 557
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	272
BsmFI	GGGAC	1 cut(s)	31
BsmI	GAATGC	2 cut(s)	96, 549
BsnI	GGCC	4 cut(s)	152, 241, 371, 524
Bso31I	GGTCTC	1 cut(s)	272
BsoBI	CYCGRG	1 cut(s)	398
Bsp120I	GGGCCC	1 cut(s)	239
Bsp1286I	GDGCHC	5 cut(s)	243, 300, 378, 540, 567
Bsp143I	GATC	5 cut(s)	25, 43, 103, 253, 363
BspACI	CCGC	8 cut(s)	123, 153, 155, 196, 201, 204, 395, 511
BspANI	GGCC	4 cut(s)	152, 241, 371, 524
BspCNI	CTCAG	3 cut(s)	21, 312, 373
BspFNI	CGCG	3 cut(s)	155, 198, 276
BspLI	GGNNCC	3 cut(s)	35, 241, 311
BspPI	GGATC	3 cut(s)	38, 98, 261
BspTNI	GGTCTC	1 cut(s)	272
BsrBI	CCGCTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	605
BsrFI	RCCGGY	1 cut(s)	148
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	4 cut(s)	47, 48, 153, 282
BssMI	GATC	5 cut(s)	25, 43, 103, 253, 363
BssSI	CACGAG	1 cut(s)	467
BssT1I	CCWWGG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	467
Bst2UI	CCWGG	2 cut(s)	49, 521
Bst4CI	ACNGT	1 cut(s)	480
Bst6I	CTCTTC	1 cut(s)	320
BstC8I	GCNNGC	3 cut(s)	120, 150, 196
BstDEI	CTNAG	3 cut(s)	29, 299, 360
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	3 cut(s)	58, 454, 493
BstFNI	CGCG	3 cut(s)	155, 198, 276
BstH2I	RGCGCY	2 cut(s)	386, 578
BstHHI	GCGC	4 cut(s)	200, 276, 385, 577
BstKTI	GATC	5 cut(s)	28, 46, 106, 256, 366
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	5 cut(s)	25, 43, 103, 253, 363
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	4 cut(s)	149, 200, 382, 562
BstNI	CCWGG	2 cut(s)	49, 521
BstNSI	RCATGY	1 cut(s)	655
BstSCI	CCNGG	4 cut(s)	47, 236, 371, 519
BstSLI	GKGCMC	1 cut(s)	243
BstUI	CGCG	3 cut(s)	155, 198, 276
BstV1I	GCAGC	3 cut(s)	200, 203, 533
BstX2I	RGATCY	1 cut(s)	103
BstXI	CCANNNNNNTGG	2 cut(s)	250, 532
BstYI	RGATCY	1 cut(s)	103
BstZI	CGGCCG	1 cut(s)	150
BsuRI	GGCC	4 cut(s)	152, 241, 371, 524
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	3 cut(s)	58, 454, 493
Cac8I	GCNNGC	3 cut(s)	120, 150, 196
CfoI	GCGC	4 cut(s)	200, 276, 385, 577
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	3 cut(s)	157, 239, 240
Cfr42I	CCGCGG	1 cut(s)	156
Csp6I	GTAC	2 cut(s)	409, 508
CviAII	CATG	4 cut(s)	161, 175, 250, 652
CviQI	GTAC	2 cut(s)	409, 508
DdeI	CTNAG	3 cut(s)	29, 299, 360
DpnI	GATC	5 cut(s)	27, 45, 105, 255, 365
DpnII	GATC	5 cut(s)	25, 43, 103, 253, 363
EaeI	YGGCCR	1 cut(s)	150
EagI	CGGCCG	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
EciI	GGCGGA	1 cut(s)	384
Ecl136II	GAGCTC	2 cut(s)	298, 565
EclXI	CGGCCG	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	282
Eco24I	GRGCYC	4 cut(s)	243, 300, 378, 567
Eco31I	GGTCTC	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	157
Eco52I	CGGCCG	1 cut(s)	150
Eco53kI	GAGCTC	2 cut(s)	298, 565
Eco57I	CTGAAG	1 cut(s)	371
Eco88I	CYCGRG	1 cut(s)	398
EcoICRI	GAGCTC	2 cut(s)	298, 565
EcoRII	CCWGG	2 cut(s)	47, 519
EcoT14I	CCWWGG	1 cut(s)	282
EcoT38I	GRGCYC	4 cut(s)	243, 300, 378, 567
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	4 cut(s)	164, 178, 253, 655
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	4 cut(s)	160, 174, 249, 651
FauI	CCCGC	1 cut(s)	203
Fnu4HI	GCNGC	7 cut(s)	123, 153, 201, 204, 214, 217, 547
FokI	GGATG	3 cut(s)	65, 461, 500
FriOI	GRGCYC	4 cut(s)	243, 300, 378, 567
Fsp4HI	GCNGC	7 cut(s)	123, 153, 201, 204, 214, 217, 547
FspBI	CTAG	1 cut(s)	266
GlaI	GCGC	4 cut(s)	199, 275, 384, 576
GluI	GCNGC	7 cut(s)	123, 153, 201, 204, 214, 217, 547
GsuI	CTGGAG	1 cut(s)	521
HaeII	RGCGCY	2 cut(s)	386, 578
HaeIII	GGCC	4 cut(s)	152, 241, 371, 524
HapII	CCGG	4 cut(s)	149, 237, 372, 557
HhaI	GCGC	4 cut(s)	200, 276, 385, 577
Hin1II	CATG	4 cut(s)	164, 178, 253, 655
Hin6I	GCGC	4 cut(s)	198, 274, 383, 575
HinP1I	GCGC	4 cut(s)	198, 274, 383, 575
HinfI	GANTC	4 cut(s)	82, 304, 329, 391
HpaII	CCGG	4 cut(s)	149, 237, 372, 557
HphI	GGTGA	1 cut(s)	119
Hpy188I	TCNGA	5 cut(s)	30, 43, 309, 363, 390
Hpy188III	TCNNGA	2 cut(s)	229, 301
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	2 cut(s)	117, 447
HpyCH4III	ACNGT	1 cut(s)	480
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	5 cut(s)	13, 219, 549, 605, 651
HpyF10VI	GCNNNNNNNGC	4 cut(s)	149, 200, 382, 562
HpyF3I	CTNAG	3 cut(s)	29, 299, 360
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	4 cut(s)	164, 178, 253, 655
HspAI	GCGC	4 cut(s)	198, 274, 383, 575
KroI	GCCGGC	1 cut(s)	148
KroNI	GCCGGC	1 cut(s)	150
KspI	CCGCGG	1 cut(s)	156
Kzo9I	GATC	5 cut(s)	25, 43, 103, 253, 363
LmnI	GCTCC	6 cut(s)	295, 309, 496, 502, 535, 562
Lsp1109I	GCAGC	3 cut(s)	200, 203, 533
LweI	GCATC	2 cut(s)	66, 427
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	5 cut(s)	27, 45, 105, 255, 365
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	5 cut(s)	25, 43, 103, 253, 363
MboII	GAAGA	3 cut(s)	254, 307, 316
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	5 cut(s)	243, 300, 378, 540, 567
MluCI	AATT	4 cut(s)	65, 319, 460, 679
MlyI	GAGTC	1 cut(s)	323
MnlI	CCTC	8 cut(s)	24, 80, 280, 285, 323, 361, 553, 565
MroNI	GCCGGC	1 cut(s)	148
MslI	CAYNNNNRTG	2 cut(s)	248, 530
MspA1I	CMGCKG	2 cut(s)	23, 155
MspI	CCGG	4 cut(s)	149, 237, 372, 557
MspR9I	CCNGG	4 cut(s)	49, 238, 373, 521
Mva1269I	GAATGC	2 cut(s)	96, 549
MvaI	CCWGG	2 cut(s)	49, 521
MvnI	CGCG	3 cut(s)	155, 198, 276
MwoI	GCNNNNNNNGC	4 cut(s)	149, 200, 382, 562
NaeI	GCCGGC	1 cut(s)	150
NciI	CCSGG	2 cut(s)	238, 373
NdeII	GATC	5 cut(s)	25, 43, 103, 253, 363
NgoMIV	GCCGGC	1 cut(s)	148
NlaIII	CATG	4 cut(s)	164, 178, 253, 655
NlaIV	GGNNCC	3 cut(s)	35, 241, 311
NmeAIII	GCCGAG	1 cut(s)	359
NspI	RCATGY	1 cut(s)	655
PasI	CCCWGGG	1 cut(s)	48
PctI	GAATGC	2 cut(s)	96, 549
PdiI	GCCGGC	1 cut(s)	150
PfeI	GAWTC	3 cut(s)	82, 304, 391
PflFI	GACNNNGTC	1 cut(s)	161
PkrI	GCNGC	7 cut(s)	124, 154, 202, 205, 215, 218, 548
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
Psp124BI	GAGCTC	2 cut(s)	300, 567
Psp6I	CCWGG	2 cut(s)	47, 519
PspGI	CCWGG	2 cut(s)	47, 519
PspN4I	GGNNCC	3 cut(s)	35, 241, 311
PspOMI	GGGCCC	1 cut(s)	239
PspPI	GGNCC	3 cut(s)	157, 239, 240
PsuI	RGATCY	1 cut(s)	103
PsyI	GACNNNGTC	1 cut(s)	161
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	2 cut(s)	410, 509
RsaNI	GTAC	2 cut(s)	409, 508
RseI	CAYNNNNRTG	2 cut(s)	248, 530
SacI	GAGCTC	2 cut(s)	300, 567
SacII	CCGCGG	1 cut(s)	156
SatI	GCNGC	7 cut(s)	123, 153, 201, 204, 214, 217, 547
Sau3AI	GATC	5 cut(s)	25, 43, 103, 253, 363
Sau96I	GGNCC	3 cut(s)	157, 239, 240
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	4 cut(s)	49, 238, 373, 521
SduI	GDGCHC	5 cut(s)	243, 300, 378, 540, 567
SfaNI	GCATC	2 cut(s)	66, 427
Sfr303I	CCGCGG	1 cut(s)	156
SgrBI	CCGCGG	1 cut(s)	156
SinI	GGWCC	1 cut(s)	157
SmiMI	CAYNNNNRTG	2 cut(s)	248, 530
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	4 cut(s)	65, 319, 460, 679
SsiI	CCGC	8 cut(s)	123, 153, 155, 196, 201, 204, 395, 511
SspMI	CTAG	1 cut(s)	266
SstI	GAGCTC	2 cut(s)	300, 567
StyD4I	CCNGG	4 cut(s)	47, 236, 371, 519
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	480
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	6 cut(s)	85, 327, 366, 475, 684, 698
TasI	AATT	4 cut(s)	65, 319, 460, 679
TauI	GCSGC	4 cut(s)	125, 155, 203, 206
TfiI	GAWTC	3 cut(s)	82, 304, 391
TseI	GCWGC	3 cut(s)	213, 216, 546
Tth111I	GACNNNGTC	1 cut(s)	161
VpaK11BI	GGWCC	1 cut(s)	157
XceI	RCATGY	1 cut(s)	655
XcmI	CCANNNNNNNNNTGG	1 cut(s)	45
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.