Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8190244.1

Orthogroup ID

OG0007113

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 574

Gene Structure 574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8190244.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atgcagagcctcgaaatggcgccggctcgcctgaagacaacgaagaagctccggtcggagctacctcgccggaggcgaactcagatctctccgattctctactcgtcgcagaaaccgaatgctcgctgcagtgaggcctctggtttctctgtgaactcgtacttcggcggcgaaatttcgtgcgagtcgagcagagtttccgttggatcggagagtgaggtgaggtcgagtgtgaagaagagaagcttcggagaaaccgaagcgccgtctcggaaagttactcgatcgagttatggaggaaaggcggtgaagataccggccgccggagacggtgaagttgaggcttctgaatcgtcgtgcgtggagtctaattccggagctgattttggaggcttcgttgagagaaagttgaagctgaagactaagagcggaattgcgaaggtaattggaggttctgaagcagttaccgaatcagcgatttccgagtccgataaggtctcactgaaattcaaggagcaagaggtcatttcactcaactctggcttgcaattgtgctcggaagcgaca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000724 GO:0000725 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

189

Amino Acids

20.18

Weight (kDa)

9.3

Isoelectric Point (pI)

64.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14750 AT1G14750 AT1G14750 AT1G14750
fragaria_vesca	FvH4_4g33270 FvH4_4g33270 FvH4_4g33270 FvH4_4g33270 FvH4_4g33270 FvH4_4g33270
malus_domestica	MD13G1018000.v1.1
prunus_persica	Prupe.1G335600_v2.0.a1
pyrus_communis	pycom13g01540
rosa_chinensis	RchiOBHm_Chr4g0442421
rosa_laevigata	RLG00000006011
rosa_multiflora	Rmu_co8190244.1_g000001 Rmu_sc0006478.1_g000001 Rmu_ssc0000204.1_g000061
rosa_roxburghii	Rroxscaffold_5G00383260
rosa_rugosa	Rorug04G0340900
rosa_samantha	Rh4AG392700 Rh4BG406300 Rh4CG421500 Rh4DG399500
rosa_wichuraiana	Rw4G033920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	19
AccBSI	CCGCTC	1 cut(s)	429
AccIII	TCCGGA	1 cut(s)	374
AciI	CCGC	4 cut(s)	168, 305, 321, 429
AclWI	GGATC	1 cut(s)	214
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	2 cut(s)	174, 506
AcuI	CTGAAG	3 cut(s)	53, 437, 477
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	2 cut(s)	16, 323
AgsI	TTSAA	2 cut(s)	412, 511
AluBI	AGCT	5 cut(s)	49, 61, 246, 380, 415
AluI	AGCT	5 cut(s)	49, 61, 246, 380, 415
Alw21I	GWGCWC	1 cut(s)	557
Alw26I	GTCTC	3 cut(s)	273, 321, 502
AlwI	GGATC	1 cut(s)	214
Aor13HI	TCCGGA	1 cut(s)	374
AoxI	GGCC	2 cut(s)	135, 318
ApeKI	GCWGC	1 cut(s)	126
ApoI	RAATTY	2 cut(s)	174, 506
AspLEI	GCGC	2 cut(s)	22, 265
AsuHPI	GGTGA	3 cut(s)	232, 319, 344
BanI	GGYRCC	1 cut(s)	19
BbsI	GAAGAC	2 cut(s)	41, 425
Bbv12I	GWGCWC	1 cut(s)	557
BbvI	GCAGC	1 cut(s)	113
BceAI	ACGGC	1 cut(s)	250
BcoDI	GTCTC	3 cut(s)	273, 321, 502
BfmI	CTRYAG	1 cut(s)	127
BfoI	RGCGCY	2 cut(s)	23, 266
BglII	AGATCT	1 cut(s)	84
BisI	GCNGC	3 cut(s)	127, 169, 321
BlsI	GCNGC	3 cut(s)	128, 170, 322
BmiI	GGNNCC	1 cut(s)	21
BpiI	GAAGAC	2 cut(s)	41, 425
BplI	GAGNNNNNCTC	2 cut(s)	64, 96
BsaHI	GRCGYC	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	502
BsaWI	WCCGGW	2 cut(s)	51, 374
BsaXI	ACNNNNNCTCC	2 cut(s)	381, 411
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 323
Bse118I	RCCGGY	2 cut(s)	22, 316
BseAI	TCCGGA	1 cut(s)	374
BseLI	CCNNNNNNNGG	2 cut(s)	16, 323
BseMII	CTCAG	1 cut(s)	95
BseX3I	CGGCCG	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	113
Bsh1285I	CGRYCG	3 cut(s)	56, 287, 321
BshFI	GGCC	2 cut(s)	137, 320
BshNI	GGYRCC	1 cut(s)	19
BsiEI	CGRYCG	3 cut(s)	56, 287, 321
BsiHKAI	GWGCWC	1 cut(s)	557
BsiSI	CCGG	6 cut(s)	23, 52, 70, 317, 324, 375
BslI	CCNNNNNNNGG	2 cut(s)	16, 323
BsmAI	GTCTC	3 cut(s)	273, 321, 502
BsmBI	CGTCTC	2 cut(s)	273, 321
BsmI	GAATGC	1 cut(s)	124
BsnI	GGCC	2 cut(s)	137, 320
Bso31I	GGTCTC	1 cut(s)	502
Bsp1286I	GDGCHC	1 cut(s)	557
Bsp13I	TCCGGA	1 cut(s)	374
Bsp143I	GATC	3 cut(s)	84, 206, 284
BspACI	CCGC	4 cut(s)	168, 305, 321, 429
BspANI	GGCC	2 cut(s)	137, 320
BspCNI	CTCAG	1 cut(s)	94
BspEI	TCCGGA	1 cut(s)	374
BspLI	GGNNCC	1 cut(s)	21
BspMAI	CTGCAG	1 cut(s)	131
BspPI	GGATC	1 cut(s)	214
BspT107I	GGYRCC	1 cut(s)	19
BspTNI	GGTCTC	1 cut(s)	502
BsrBI	CCGCTC	1 cut(s)	429
BsrFI	RCCGGY	2 cut(s)	22, 316
BssAI	RCCGGY	2 cut(s)	22, 316
BssMI	GATC	3 cut(s)	84, 206, 284
BssNI	GRCGYC	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	1 cut(s)	233
BstACI	GRCGYC	1 cut(s)	20
BstC8I	GCNNGC	4 cut(s)	24, 28, 124, 545
BstDEI	CTNAG	2 cut(s)	81, 423
BstH2I	RGCGCY	2 cut(s)	23, 266
BstHHI	GCGC	2 cut(s)	22, 265
BstKTI	GATC	3 cut(s)	87, 209, 287
BstMAI	GTCTC	3 cut(s)	273, 321, 502
BstMBI	GATC	3 cut(s)	84, 206, 284
BstMCI	CGRYCG	3 cut(s)	56, 287, 321
BstMWI	GCNNNNNNNGC	1 cut(s)	189
BstSFI	CTRYAG	1 cut(s)	127
BstV1I	GCAGC	1 cut(s)	113
BstV2I	GAAGAC	2 cut(s)	41, 425
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BstZI	CGGCCG	1 cut(s)	318
BsuRI	GGCC	2 cut(s)	137, 320
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	2 cut(s)	136, 500
Cac8I	GCNNGC	4 cut(s)	24, 28, 124, 545
CfoI	GCGC	2 cut(s)	22, 265
Cfr10I	RCCGGY	2 cut(s)	22, 316
Csp6I	GTAC	1 cut(s)	160
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	2 cut(s)	81, 423
DinI	GGCGCC	1 cut(s)	21
DpnI	GATC	3 cut(s)	86, 208, 286
DpnII	GATC	3 cut(s)	84, 206, 284
EaeI	YGGCCR	1 cut(s)	318
EagI	CGGCCG	1 cut(s)	318
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
EclXI	CGGCCG	1 cut(s)	318
Eco147I	AGGCCT	1 cut(s)	137
Eco31I	GGTCTC	1 cut(s)	502
Eco52I	CGGCCG	1 cut(s)	318
Eco57I	CTGAAG	3 cut(s)	53, 437, 477
EgeI	GGCGCC	1 cut(s)	21
EheI	GGCGCC	1 cut(s)	21
Esp3I	CGTCTC	2 cut(s)	273, 321
FaiI	YATR	1 cut(s)	294
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
Fnu4HI	GCNGC	3 cut(s)	127, 169, 321
Fsp4HI	GCNGC	3 cut(s)	127, 169, 321
GlaI	GCGC	2 cut(s)	21, 264
GluI	GCNGC	3 cut(s)	127, 169, 321
HaeII	RGCGCY	2 cut(s)	23, 266
HaeIII	GGCC	2 cut(s)	137, 320
HapII	CCGG	6 cut(s)	23, 52, 70, 317, 324, 375
HhaI	GCGC	2 cut(s)	22, 265
Hin1I	GRCGYC	1 cut(s)	20
Hin6I	GCGC	2 cut(s)	20, 263
HinP1I	GCGC	2 cut(s)	20, 263
HindIII	AAGCTT	1 cut(s)	244
HinfI	GANTC	6 cut(s)	94, 185, 350, 365, 470, 485
HpaII	CCGG	6 cut(s)	23, 52, 70, 317, 324, 375
HphI	GGTGA	3 cut(s)	232, 319, 344
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188III	TCNNGA	1 cut(s)	375
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	2 cut(s)	109, 358
HpyAV	CCTTC	1 cut(s)	433
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4V	TGCA	3 cut(s)	4, 129, 547
HpyF10VI	GCNNNNNNNGC	1 cut(s)	189
HpyF3I	CTNAG	2 cut(s)	81, 423
Hsp92I	GRCGYC	1 cut(s)	20
HspAI	GCGC	2 cut(s)	20, 263
KasI	GGCGCC	1 cut(s)	19
Kpn2I	TCCGGA	1 cut(s)	374
KroI	GCCGGC	1 cut(s)	22
KroNI	GCCGGC	1 cut(s)	24
Kzo9I	GATC	3 cut(s)	84, 206, 284
LmnI	GCTCC	4 cut(s)	54, 58, 377, 514
LpnPI	CCDG	9 cut(s)	36, 44, 65, 83, 126, 330, 337, 388, 525
Lsp1109I	GCAGC	1 cut(s)	113
MaeIII	GTNAC	2 cut(s)	277, 463
MalI	GATC	3 cut(s)	86, 208, 286
MbiI	CCGCTC	1 cut(s)	429
MboI	GATC	3 cut(s)	84, 206, 284
MboII	GAAGA	6 cut(s)	46, 55, 247, 250, 322, 430
MfeI	CAATTG	1 cut(s)	548
MflI	RGATCY	1 cut(s)	84
MhlI	GDGCHC	1 cut(s)	557
MluCI	AATT	6 cut(s)	174, 370, 432, 444, 506, 548
Mly113I	GGCGCC	1 cut(s)	20
MlyI	GAGTC	3 cut(s)	194, 374, 494
MmeI	TCCRAC	2 cut(s)	36, 184
MroI	TCCGGA	1 cut(s)	374
MroNI	GCCGGC	1 cut(s)	22
MspI	CCGG	6 cut(s)	23, 52, 70, 317, 324, 375
MunI	CAATTG	1 cut(s)	548
Mva1269I	GAATGC	1 cut(s)	124
MwoI	GCNNNNNNNGC	1 cut(s)	189
NaeI	GCCGGC	1 cut(s)	24
NarI	GGCGCC	1 cut(s)	20
NdeII	GATC	3 cut(s)	84, 206, 284
NgoMIV	GCCGGC	1 cut(s)	22
NlaIV	GGNNCC	1 cut(s)	21
PceI	AGGCCT	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	4 cut(s)	73, 113, 185, 255
PctI	GAATGC	1 cut(s)	124
PdiI	GCCGGC	1 cut(s)	24
PfeI	GAWTC	3 cut(s)	94, 350, 470
PkrI	GCNGC	3 cut(s)	128, 170, 322
Ple19I	CGATCG	1 cut(s)	287
PleI	GAGTC	3 cut(s)	193, 373, 493
PluTI	GGCGCC	1 cut(s)	23
PpsI	GAGTC	3 cut(s)	193, 373, 493
PspN4I	GGNNCC	1 cut(s)	21
PstI	CTGCAG	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	84
PvuI	CGATCG	1 cut(s)	287
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SatI	GCNGC	3 cut(s)	127, 169, 321
Sau3AI	GATC	3 cut(s)	84, 206, 284
SchI	GAGTC	3 cut(s)	194, 374, 494
SduI	GDGCHC	1 cut(s)	557
SfcI	CTRYAG	1 cut(s)	127
SfoI	GGCGCC	1 cut(s)	21
Sse9I	AATT	6 cut(s)	174, 370, 432, 444, 506, 548
SseBI	AGGCCT	1 cut(s)	137
SsiI	CCGC	4 cut(s)	168, 305, 321, 429
SspDI	GGCGCC	1 cut(s)	19
StuI	AGGCCT	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	332
TaqI	TCGA	5 cut(s)	12, 188, 227, 283, 287
TasI	AATT	6 cut(s)	174, 370, 432, 444, 506, 548
TauI	GCSGC	2 cut(s)	171, 323
TfiI	GAWTC	3 cut(s)	94, 350, 470
TscAI	CASTG	2 cut(s)	136, 507
TseI	GCWGC	1 cut(s)	126
TspGWI	ACGGA	1 cut(s)	190
TspRI	CASTG	2 cut(s)	136, 507
XapI	RAATTY	2 cut(s)	174, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.