Rmu_co8198526.1_g000001

Protein of unknown function (DUF1005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8198526.1
OG0029211
Physical Location & Seq
Forward (+)
79 .. 681
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8198526.1_g000001.1.cds

Sequence Viewer

Length: 603 bp
atggatccgtgtccctttgttcgggtcatggtcgactctttagccctgaagcttccacacgccaccaagcctgcaggttccggagttcactcctccaccactccctgtttctgcgagctgaggatcaagaactttcctccccaaactgcccttctcagtctctccagctctactaacgactcccctcccgactcgtttacctcagcgcatgggttcaacctggacccgactgcgctgaggctgttgtcgggaaagcccatcacgctccgtgtgtctgtatacacggggcggatgggcaggacatgtggagtcaccagcgggaagttgctgggccgggtcaacctcagcattgatctcgacgcggccaagtccagcccgcgagtgatccacaacgggtggatgaagctcgggagtcatagcgacaagccctcctccgccaggctgcacatgacggtccgggctgaaccggatccccggtttgtttttcagttcggtggcgaaccggagtgtagtccggtggtttttcagattcaggggcgggatatacgccagcctgtttttagctgcaagttcagtgccgaccgtaattccagattccggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1005

Protein Analysis

200

Amino Acids

21.81

Weight (kDa)

9.78

Isoelectric Point (pI)

37.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029211)

Species Orthologous Gene IDs
pyrus_communis pycom02g05400
rosa_multiflora Rmu_co8198526.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 65
AccI GTMKAC 2 cut(s) 33, 279
AccII CGCG 2 cut(s) 362, 379
AccIII TCCGGA 1 cut(s) 80
AciI CCGC 6 cut(s) 289, 318, 362, 377, 435, 538
AclWI GGATC 5 cut(s) 12, 131, 379, 464, 477
AcoI YGGCCR 1 cut(s) 363
AcuI CTGAAG 1 cut(s) 68
AfiI CCNNNNNNNGG 3 cut(s) 21, 438, 597
AflIII ACRYGT 1 cut(s) 302
AgsI TTSAA 1 cut(s) 217
AjnI CCWGG 2 cut(s) 219, 437
AjuI GAANNNNNNNTTGG 2 cut(s) 135, 167
AluBI AGCT 5 cut(s) 52, 118, 168, 406, 564
AluI AGCT 5 cut(s) 52, 118, 168, 406, 564
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 5 cut(s) 12, 131, 379, 464, 477
Ama87I CYCGRG 1 cut(s) 407
Aor13HI TCCGGA 1 cut(s) 80
AoxI GGCC 2 cut(s) 331, 363
ApeKI GCWGC 2 cut(s) 442, 564
AspLEI GCGC 2 cut(s) 208, 235
AspS9I GGNCC 3 cut(s) 223, 331, 454
AsuC2I CCSGG 3 cut(s) 335, 458, 475
AsuHPI GGTGA 1 cut(s) 304
AvaI CYCGRG 1 cut(s) 407
AvaII GGWCC 2 cut(s) 223, 454
BamHI GGATCC 2 cut(s) 4, 469
BbvCI CCTCAGC 4 cut(s) 119, 202, 236, 344
BbvI GCAGC 2 cut(s) 429, 551
BccI CCATC 2 cut(s) 266, 286
BcgI CGANNNNNNTGC 2 cut(s) 337, 371
BciT130I CCWGG 2 cut(s) 221, 439
BcnI CCSGG 3 cut(s) 335, 458, 475
BcoDI GTCTC 1 cut(s) 164
BfmI CTRYAG 1 cut(s) 72
BfuAI ACCTGC 1 cut(s) 65
BisI GCNGC 3 cut(s) 363, 443, 565
BlsI GCNGC 3 cut(s) 364, 444, 566
Bme1390I CCNGG 5 cut(s) 221, 335, 439, 458, 475
Bme18I GGWCC 2 cut(s) 223, 454
BmeT110I CYCGRG 1 cut(s) 407
BmgT120I GGNCC 3 cut(s) 223, 331, 454
BmiI GGNNCC 4 cut(s) 6, 79, 225, 471
BmrFI CCNGG 5 cut(s) 221, 335, 439, 458, 475
BpmI CTGGAG 1 cut(s) 148
Bpu10I CCTNAGC 4 cut(s) 119, 202, 236, 344
BpuMI CCSGG 3 cut(s) 335, 458, 475
BsaJI CCNNGG 1 cut(s) 473
BsaWI WCCGGW 5 cut(s) 80, 466, 502, 514, 597
BsaXI ACNNNNNCTCC 2 cut(s) 413, 443
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 438, 597
BseAI TCCGGA 1 cut(s) 80
BseBI CCWGG 2 cut(s) 221, 439
BseDI CCNNGG 1 cut(s) 473
BseGI GGATG 2 cut(s) 297, 405
BseLI CCNNNNNNNGG 3 cut(s) 21, 438, 597
BseMII CTCAG 5 cut(s) 110, 169, 216, 227, 358
BseRI GAGGAG 2 cut(s) 82, 421
BseXI GCAGC 2 cut(s) 429, 551
BseYI CCCAGC 1 cut(s) 328
BsgI GTGCAG 1 cut(s) 428
Bsh1236I CGCG 2 cut(s) 362, 379
Bsh1285I CGRYCG 1 cut(s) 583
BshFI GGCC 2 cut(s) 333, 365
BsiEI CGRYCG 1 cut(s) 583
BsiHKCI CYCGRG 1 cut(s) 407
BsiSI CCGG 8 cut(s) 81, 334, 457, 467, 475, 503, 515, 598
BslI CCNNNNNNNGG 3 cut(s) 21, 438, 597
BsmAI GTCTC 1 cut(s) 164
BsnI GGCC 2 cut(s) 333, 365
BsoBI CYCGRG 1 cut(s) 407
Bsp13I TCCGGA 1 cut(s) 80
Bsp143I GATC 5 cut(s) 4, 123, 352, 384, 469
BspACI CCGC 6 cut(s) 289, 318, 362, 377, 435, 538
BspANI GGCC 2 cut(s) 333, 365
BspCNI CTCAG 5 cut(s) 111, 168, 215, 228, 357
BspEI TCCGGA 1 cut(s) 80
BspFNI CGCG 2 cut(s) 362, 379
BspLI GGNNCC 4 cut(s) 6, 79, 225, 471
BspMAI CTGCAG 1 cut(s) 76
BspMI ACCTGC 1 cut(s) 65
BspPI GGATC 5 cut(s) 12, 131, 379, 464, 477
BssECI CCNNGG 1 cut(s) 473
BssMI GATC 5 cut(s) 4, 123, 352, 384, 469
BssNAI GTATAC 1 cut(s) 280
Bst1107I GTATAC 1 cut(s) 280
Bst2UI CCWGG 2 cut(s) 221, 439
Bst4CI ACNGT 2 cut(s) 454, 584
BstC8I GCNNGC 4 cut(s) 72, 116, 377, 551
BstDEI CTNAG 5 cut(s) 119, 155, 202, 236, 344
BstENI CCTNNNNNAGG 1 cut(s) 436
BstF5I GGATG 2 cut(s) 297, 405
BstFNI CGCG 2 cut(s) 362, 379
BstHHI GCGC 2 cut(s) 208, 235
BstKTI GATC 5 cut(s) 7, 126, 355, 387, 472
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 5 cut(s) 4, 123, 352, 384, 469
BstMCI CGRYCG 1 cut(s) 583
BstMWI GCNNNNNNNGC 1 cut(s) 262
BstNI CCWGG 2 cut(s) 221, 439
BstNSI RCATGY 1 cut(s) 306
BstSCI CCNGG 5 cut(s) 219, 333, 437, 456, 473
BstSFI CTRYAG 1 cut(s) 72
BstUI CGCG 2 cut(s) 362, 379
BstV1I GCAGC 2 cut(s) 429, 551
BstX2I RGATCY 2 cut(s) 4, 469
BstYI RGATCY 2 cut(s) 4, 469
BstZ17I GTATAC 1 cut(s) 280
BsuRI GGCC 2 cut(s) 333, 365
BtsCI GGATG 2 cut(s) 297, 405
BtsIMutI CAGTG 1 cut(s) 580
BveI ACCTGC 1 cut(s) 65
Cac8I GCNNGC 4 cut(s) 72, 116, 377, 551
CfoI GCGC 2 cut(s) 208, 235
Cfr13I GGNCC 3 cut(s) 223, 331, 454
CpoI CGGWCCG 1 cut(s) 454
CseI GACGC 1 cut(s) 368
CspI CGGWCCG 1 cut(s) 454
CviAII CATG 4 cut(s) 28, 209, 303, 448
DdeI CTNAG 5 cut(s) 119, 155, 202, 236, 344
DpnI GATC 5 cut(s) 6, 125, 354, 386, 471
DpnII GATC 5 cut(s) 4, 123, 352, 384, 469
EaeI YGGCCR 1 cut(s) 363
EciI GGCGGA 2 cut(s) 304, 424
Eco47I GGWCC 2 cut(s) 223, 454
Eco57I CTGAAG 1 cut(s) 68
Eco88I CYCGRG 1 cut(s) 407
EcoNI CCTNNNNNAGG 1 cut(s) 436
EcoRII CCWGG 2 cut(s) 219, 437
FaeI CATG 4 cut(s) 31, 212, 306, 451
FaiI YATR 7 cut(s) 29, 210, 280, 304, 417, 449, 545
FatI CATG 4 cut(s) 27, 208, 302, 447
FauI CCCGC 3 cut(s) 311, 384, 531
FblI GTMKAC 2 cut(s) 33, 279
Fnu4HI GCNGC 3 cut(s) 363, 443, 565
FokI GGATG 2 cut(s) 304, 412
Fsp4HI GCNGC 3 cut(s) 363, 443, 565
GlaI GCGC 2 cut(s) 207, 234
GluI GCNGC 3 cut(s) 363, 443, 565
GsaI CCCAGC 1 cut(s) 332
GsuI CTGGAG 1 cut(s) 148
HaeIII GGCC 2 cut(s) 333, 365
HapII CCGG 8 cut(s) 81, 334, 457, 467, 475, 503, 515, 598
HgaI GACGC 1 cut(s) 368
HhaI GCGC 2 cut(s) 208, 235
Hin1II CATG 4 cut(s) 31, 212, 306, 451
Hin6I GCGC 2 cut(s) 206, 233
HinP1I GCGC 2 cut(s) 206, 233
HincII GTYRAC 2 cut(s) 34, 340
HindII GTYRAC 2 cut(s) 34, 340
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 7 cut(s) 35, 179, 191, 309, 412, 529, 594
HpaII CCGG 8 cut(s) 81, 334, 457, 467, 475, 503, 515, 598
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 5 cut(s) 34, 88, 198, 280, 340
Hpy188I TCNGA 1 cut(s) 528
Hpy188III TCNNGA 7 cut(s) 81, 127, 188, 249, 356, 409, 591
Hpy8I GTNNAC 5 cut(s) 34, 88, 198, 280, 340
Hpy99I CGWCG 1 cut(s) 362
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 2 cut(s) 454, 584
HpyCH4V TGCA 3 cut(s) 74, 445, 567
HpyF10VI GCNNNNNNNGC 1 cut(s) 262
HpyF3I CTNAG 5 cut(s) 119, 155, 202, 236, 344
Hsp92II CATG 4 cut(s) 31, 212, 306, 451
HspAI GCGC 2 cut(s) 206, 233
Kpn2I TCCGGA 1 cut(s) 80
Kzo9I GATC 5 cut(s) 4, 123, 352, 384, 469
LmnI GCTCC 1 cut(s) 270
Lsp1109I GCAGC 2 cut(s) 429, 551
MaeIII GTNAC 1 cut(s) 310
MalI GATC 5 cut(s) 6, 125, 354, 386, 471
MboI GATC 5 cut(s) 4, 123, 352, 384, 469
MflI RGATCY 2 cut(s) 4, 469
MluCI AATT 1 cut(s) 586
MlyI GAGTC 5 cut(s) 29, 173, 185, 318, 421
MnlI CCTC 9 cut(s) 103, 114, 147, 195, 211, 231, 353, 439, 442
MroI TCCGGA 1 cut(s) 80
MspA1I CMGCKG 1 cut(s) 318
MspI CCGG 8 cut(s) 81, 334, 457, 467, 475, 503, 515, 598
MspR9I CCNGG 5 cut(s) 221, 335, 439, 458, 475
MvaI CCWGG 2 cut(s) 221, 439
MvnI CGCG 2 cut(s) 362, 379
MwoI GCNNNNNNNGC 1 cut(s) 262
NciI CCSGG 3 cut(s) 335, 458, 475
NdeII GATC 5 cut(s) 4, 123, 352, 384, 469
NlaIII CATG 4 cut(s) 31, 212, 306, 451
NlaIV GGNNCC 4 cut(s) 6, 79, 225, 471
NmuCI GTSAC 1 cut(s) 310
NspI RCATGY 1 cut(s) 306
PciI ACATGT 1 cut(s) 302
PfeI GAWTC 2 cut(s) 529, 594
PkrI GCNGC 3 cut(s) 364, 444, 566
PleI GAGTC 5 cut(s) 29, 173, 185, 317, 420
PpsI GAGTC 5 cut(s) 29, 173, 185, 317, 420
PscI ACATGT 1 cut(s) 302
Psp6I CCWGG 2 cut(s) 219, 437
PspFI CCCAGC 1 cut(s) 328
PspGI CCWGG 2 cut(s) 219, 437
PspN4I GGNNCC 4 cut(s) 6, 79, 225, 471
PspPI GGNCC 3 cut(s) 223, 331, 454
PstI CTGCAG 1 cut(s) 76
PsuI RGATCY 2 cut(s) 4, 469
Rsr2I CGGWCCG 1 cut(s) 454
RsrII CGGWCCG 1 cut(s) 454
SalI GTCGAC 1 cut(s) 32
SatI GCNGC 3 cut(s) 363, 443, 565
Sau3AI GATC 5 cut(s) 4, 123, 352, 384, 469
Sau96I GGNCC 3 cut(s) 223, 331, 454
SbfI CCTGCAGG 1 cut(s) 76
SchI GAGTC 5 cut(s) 29, 173, 185, 318, 421
ScrFI CCNGG 5 cut(s) 221, 335, 439, 458, 475
SdaI CCTGCAGG 1 cut(s) 76
SetI ASST 9 cut(s) 54, 79, 120, 170, 203, 222, 345, 408, 566
SfcI CTRYAG 1 cut(s) 72
SinI GGWCC 2 cut(s) 223, 454
Sse8387I CCTGCAGG 1 cut(s) 76
Sse9I AATT 1 cut(s) 586
SsiI CCGC 6 cut(s) 289, 318, 362, 377, 435, 538
StyD4I CCNGG 5 cut(s) 219, 333, 437, 456, 473
TaaI ACNGT 2 cut(s) 454, 584
TaqI TCGA 2 cut(s) 33, 357
TasI AATT 1 cut(s) 586
TauI GCSGC 1 cut(s) 365
TfiI GAWTC 2 cut(s) 529, 594
TscAI CASTG 1 cut(s) 580
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 2 cut(s) 442, 564
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 1 cut(s) 416
TspGWI ACGGA 1 cut(s) 257
TspRI CASTG 1 cut(s) 580
VpaK11BI GGWCC 2 cut(s) 223, 454
XagI CCTNNNNNAGG 1 cut(s) 436
XceI RCATGY 1 cut(s) 306
XmiI GTMKAC 2 cut(s) 33, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.