Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8207126.1

Orthogroup ID

OG0024473

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 687

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8207126.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 464 bp

atgttacagatatgtgatatggtagccgttgcaaagataatgaatgctactctggtgcttccttatctagatcacgagtctttttggactgatccaagtggttttaaagatatatttgactggagacacttcatagacgtgttaacagatgatattgagataatcgagtatttgccaacccgttatgcagctcaaaagccccttctgaaggctcccatctcctggtctaaggctagttattacagaaaagaaatgataccgttgttgaaaaagcataaggttgtaaagtttacccacactgattcgcgtcttgctaataatggacttgcaagttccatccaaaggttgaggtgccgtgccaattatgagggtcttcgatatacaaaggagattgaggatcttgggaaagttttggtcaatagattaaggaacaatggcaatccatatattgctcttcatttaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

154

Amino Acids

17.94

Weight (kDa)

9.2

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024473)

Species	Orthologous Gene IDs
malus_domestica	MD07G1212500.v1.1
pyrus_communis	pycom05g13880
rosa_multiflora	Rmu_co8207126.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	351
AccB7I	CCANNNNNTGG	1 cut(s)	222
AccII	CGCG	1 cut(s)	307
AclWI	GGATC	2 cut(s)	86, 405
AcuI	CTGAAG	1 cut(s)	227
AfiI	CCNNNNNNNGG	3 cut(s)	208, 222, 342
AflIII	ACRYGT	1 cut(s)	138
AgsI	TTSAA	1 cut(s)	268
AjiI	CACGTC	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	221
AluBI	AGCT	1 cut(s)	191
AluI	AGCT	1 cut(s)	191
Alw26I	GTCTC	1 cut(s)	118
AlwI	GGATC	2 cut(s)	86, 405
ApeKI	GCWGC	1 cut(s)	188
BaeI	ACNNNNGTAYC	2 cut(s)	248, 281
BanI	GGYRCC	1 cut(s)	351
BauI	CACGAG	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	365
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	2 cut(s)	224, 344
BceAI	ACGGC	2 cut(s)	11, 339
BciT130I	CCWGG	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	118
BfaI	CTAG	2 cut(s)	68, 234
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	1 cut(s)	223
BmgBI	CACGTC	1 cut(s)	139
BmiI	GGNNCC	2 cut(s)	213, 353
BmrFI	CCNGG	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	365
BpmI	CTGGAG	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 222, 342
Bse1I	ACTGG	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	223
BseGI	GGATG	1 cut(s)	336
BseLI	CCNNNNNNNGG	3 cut(s)	208, 222, 342
BseNI	ACTGG	1 cut(s)	125
BseXI	GCAGC	1 cut(s)	200
Bsh1236I	CGCG	1 cut(s)	307
BshNI	GGYRCC	1 cut(s)	351
BslI	CCNNNNNNNGG	3 cut(s)	208, 222, 342
BsmAI	GTCTC	1 cut(s)	118
BsmI	GAATGC	1 cut(s)	49
Bsp143I	GATC	3 cut(s)	70, 91, 397
BspFNI	CGCG	1 cut(s)	307
BspLI	GGNNCC	2 cut(s)	213, 353
BspPI	GGATC	2 cut(s)	86, 405
BspQI	GCTCTTC	1 cut(s)	459
BspT107I	GGYRCC	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	125
BssMI	GATC	3 cut(s)	70, 91, 397
BssSI	CACGAG	1 cut(s)	74
Bst2BI	CACGAG	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	223
Bst4CI	ACNGT	1 cut(s)	261
Bst6I	CTCTTC	1 cut(s)	459
BstDEI	CTNAG	1 cut(s)	228
BstENI	CCTNNNNNAGG	1 cut(s)	206
BstF5I	GGATG	1 cut(s)	336
BstFNI	CGCG	1 cut(s)	307
BstKTI	GATC	3 cut(s)	73, 94, 400
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	3 cut(s)	70, 91, 397
BstNI	CCWGG	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	221
BstUI	CGCG	1 cut(s)	307
BstV1I	GCAGC	1 cut(s)	200
BstV2I	GAAGAC	1 cut(s)	365
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	297
CseI	GACGC	1 cut(s)	296
CviJI	RGCY	5 cut(s)	26, 191, 199, 212, 233
CviKI_1	RGCY	5 cut(s)	26, 191, 199, 212, 233
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	3 cut(s)	72, 93, 399
DpnII	GATC	3 cut(s)	70, 91, 397
DraI	TTTAAA	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Eco57I	CTGAAG	1 cut(s)	227
EcoNI	CCTNNNNNAGG	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	221
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	2 cut(s)	68, 234
GluI	GCNGC	1 cut(s)	189
GsuI	CTGGAG	1 cut(s)	142
HgaI	GACGC	1 cut(s)	296
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HinfI	GANTC	2 cut(s)	77, 302
HpaI	GTTAAC	1 cut(s)	144
Hpy166II	GTNNAC	2 cut(s)	144, 291
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	2 cut(s)	68, 74
Hpy8I	GTNNAC	2 cut(s)	144, 291
HpyAV	CCTTC	2 cut(s)	202, 212
HpyCH4III	ACNGT	1 cut(s)	261
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	3 cut(s)	32, 188, 329
HpyF3I	CTNAG	1 cut(s)	228
HpySE526I	ACGT	1 cut(s)	138
KspAI	GTTAAC	1 cut(s)	144
Kzo9I	GATC	3 cut(s)	70, 91, 397
LguI	GCTCTTC	1 cut(s)	459
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	4 cut(s)	38, 106, 208, 235
Lsp1109I	GCAGC	1 cut(s)	200
MaeI	CTAG	2 cut(s)	68, 234
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	3 cut(s)	72, 93, 399
MboI	GATC	3 cut(s)	70, 91, 397
MboII	GAAGA	2 cut(s)	365, 446
MflI	RGATCY	1 cut(s)	397
MluCI	AATT	1 cut(s)	361
MlyI	GAGTC	1 cut(s)	86
MnlI	CCTC	3 cut(s)	342, 361, 388
MseI	TTAA	4 cut(s)	105, 143, 425, 461
MslI	CAYNNNNRTG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	223
Mva1269I	GAATGC	1 cut(s)	49
MvaI	CCWGG	1 cut(s)	223
MvnI	CGCG	1 cut(s)	307
NdeII	GATC	3 cut(s)	70, 91, 397
NlaIV	GGNNCC	2 cut(s)	213, 353
PciSI	GCTCTTC	1 cut(s)	459
PctI	GAATGC	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	302
PflMI	CCANNNNNTGG	1 cut(s)	222
PkrI	GCNGC	1 cut(s)	190
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
Psp6I	CCWGG	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	221
PspN4I	GGNNCC	2 cut(s)	213, 353
PsuI	RGATCY	1 cut(s)	397
RseI	CAYNNNNRTG	1 cut(s)	137
SapI	GCTCTTC	1 cut(s)	459
SaqAI	TTAA	4 cut(s)	105, 143, 425, 461
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	3 cut(s)	70, 91, 397
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	223
SetI	ASST	5 cut(s)	141, 193, 282, 347, 353
SmiMI	CAYNNNNRTG	1 cut(s)	137
Sse9I	AATT	1 cut(s)	361
SspMI	CTAG	2 cut(s)	68, 234
StyD4I	CCNGG	1 cut(s)	221
TaaI	ACNGT	1 cut(s)	261
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	165, 376
TasI	AATT	1 cut(s)	361
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	4 cut(s)	105, 143, 425, 461
Tru9I	TTAA	4 cut(s)	105, 143, 425, 461
TscAI	CASTG	1 cut(s)	304
TseI	GCWGC	1 cut(s)	188
TspDTI	ATGAA	3 cut(s)	56, 121, 446
TspRI	CASTG	1 cut(s)	304
Van91I	CCANNNNNTGG	1 cut(s)	222
XagI	CCTNNNNNAGG	1 cut(s)	206
XbaI	TCTAGA	1 cut(s)	67
XspI	CTAG	2 cut(s)	68, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.