Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8228149.1

Orthogroup ID

OG0029305

Physical Location & Seq

Genomic Coordinates Reverse (-)

180 .. 731

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8228149.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ctggggtatgctgacttggtggaggagtcttcgcttggtgatagcaagattgtgaagattactgggattcagaacatgggtaggactacgtctgtgctggttcgtggctcgaaccagttggtgcttgatgaggcggagaggagcttgcacgatgctttgtgtgtggttaggtgtttggtgagcaagaggtttttgattgctggtggtggtgccccggagattgagctctccaggcagttgggtgcttgggctaaggtgttgcaggggatggagagtcattgtgtcaagtattttgcacaagcacttgaggttattccctatacattggctgaaaatgctgggttgaacccgatgaccattgtcactgagctgaggaaccgccacaatgagggtgagatcaacactggcattaatgtgaggaaggggcagattaccaacatctgggacgagaatgtggtgcagccgctgctcgtgagcacaagtgccatcacattggccacagagtgtgtgcggatgattttgaagatcgatgacatagtaacagtaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0008150 GO:0009987 GO:0010035 GO:0010038 GO:0032991 GO:0042221 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0050896 GO:0051082 GO:0061077 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

183

Amino Acids

20.03

Weight (kDa)

5.66

Isoelectric Point (pI)

32.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029305)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g19790
rosa_multiflora	Rmu_co8228149.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	209
AccB7I	CCANNNNNTGG	1 cut(s)	441
AciI	CCGC	4 cut(s)	134, 379, 464, 511
AcoI	YGGCCR	1 cut(s)	495
AdeI	CACNNNGTG	1 cut(s)	504
AfiI	CCNNNNNNNGG	2 cut(s)	388, 441
AgsI	TTSAA	2 cut(s)	346, 523
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	3 cut(s)	144, 226, 370
AluI	AGCT	3 cut(s)	144, 226, 370
Alw21I	GWGCWC	2 cut(s)	228, 479
AlwNI	CAGNNNCTG	1 cut(s)	466
AoxI	GGCC	1 cut(s)	495
ApeKI	GCWGC	2 cut(s)	460, 466
AseI	ATTAAT	1 cut(s)	411
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	3 cut(s)	50, 190, 404
BaeGI	GKGCMC	1 cut(s)	214
BalI	TGGCCA	1 cut(s)	497
BanI	GGYRCC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	228
BauI	CACGAG	1 cut(s)	470
BbsI	GAAGAC	1 cut(s)	21
Bbv12I	GWGCWC	2 cut(s)	228, 479
BbvCI	CCTCAGC	1 cut(s)	371
BbvI	GCAGC	2 cut(s)	453, 472
BccI	CCATC	2 cut(s)	262, 494
BciT130I	CCWGG	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	215
BisI	GCNGC	3 cut(s)	461, 464, 467
BlsI	GCNGC	3 cut(s)	462, 465, 468
Bme1390I	CCNGG	2 cut(s)	215, 232
BmiI	GGNNCC	2 cut(s)	211, 377
BmrFI	CCNGG	2 cut(s)	215, 232
BmrI	ACTGGG	1 cut(s)	72
BmsI	GCATC	1 cut(s)	142
BmuI	ACTGGG	1 cut(s)	72
BoxI	GACNNNNGTC	1 cut(s)	359
BpiI	GAAGAC	1 cut(s)	21
BpmI	CTGGAG	1 cut(s)	214
Bpu10I	CCTNAGC	2 cut(s)	252, 371
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	215
Bsa29I	ATCGAT	1 cut(s)	528
BsaJI	CCNNGG	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	2 cut(s)	388, 441
Bse1I	ACTGG	3 cut(s)	67, 115, 409
BseBI	CCWGG	1 cut(s)	232
BseCI	ATCGAT	1 cut(s)	528
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	2 cut(s)	273, 519
BseLI	CCNNNNNNNGG	2 cut(s)	388, 441
BseMII	CTCAG	2 cut(s)	357, 362
BseNI	ACTGG	3 cut(s)	67, 115, 409
BseRI	GAGGAG	2 cut(s)	38, 154
BseSI	GKGCMC	1 cut(s)	214
BseXI	GCAGC	2 cut(s)	453, 472
BseYI	CCCAGC	1 cut(s)	338
BsgI	GTGCAG	1 cut(s)	479
BshFI	GGCC	1 cut(s)	497
BshNI	GGYRCC	1 cut(s)	209
BshVI	ATCGAT	1 cut(s)	528
BsiHKAI	GWGCWC	2 cut(s)	228, 479
BsiSI	CCGG	1 cut(s)	215
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	2 cut(s)	388, 441
BsmFI	GGGAC	1 cut(s)	458
BsnI	GGCC	1 cut(s)	497
Bsp1286I	GDGCHC	3 cut(s)	214, 228, 479
Bsp143I	GATC	2 cut(s)	396, 525
BspACI	CCGC	4 cut(s)	134, 379, 464, 511
BspANI	GGCC	1 cut(s)	497
BspCNI	CTCAG	2 cut(s)	358, 363
BspDI	ATCGAT	1 cut(s)	528
BspLI	GGNNCC	2 cut(s)	211, 377
BspT107I	GGYRCC	1 cut(s)	209
BsrI	ACTGG	3 cut(s)	67, 115, 409
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	2 cut(s)	396, 525
BssSI	CACGAG	1 cut(s)	470
Bst2BI	CACGAG	1 cut(s)	470
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	544
BstAPI	GCANNNNNTGC	1 cut(s)	466
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	3 cut(s)	252, 366, 371
BstF5I	GGATG	2 cut(s)	273, 519
BstKTI	GATC	2 cut(s)	399, 528
BstMBI	GATC	2 cut(s)	396, 525
BstMWI	GCNNNNNNNGC	3 cut(s)	232, 335, 466
BstNI	CCWGG	1 cut(s)	232
BstPAI	GACNNNNGTC	1 cut(s)	359
BstSCI	CCNGG	2 cut(s)	213, 230
BstSLI	GKGCMC	1 cut(s)	214
BstV1I	GCAGC	2 cut(s)	453, 472
BstV2I	GAAGAC	1 cut(s)	21
BstXI	CCANNNNNNTGG	2 cut(s)	238, 493
Bsu15I	ATCGAT	1 cut(s)	528
BsuRI	GGCC	1 cut(s)	497
BsuTUI	ATCGAT	1 cut(s)	528
BtsCI	GGATG	2 cut(s)	273, 519
BtsIMutI	CAGTG	2 cut(s)	363, 402
Cac8I	GCNNGC	1 cut(s)	146
CaiI	CAGNNNCTG	1 cut(s)	466
ClaI	ATCGAT	1 cut(s)	528
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	8 cut(s)	108, 144, 226, 251, 329, 370, 463, 497
CviKI_1	RGCY	8 cut(s)	108, 144, 226, 251, 329, 370, 463, 497
DdeI	CTNAG	3 cut(s)	252, 366, 371
DpnI	GATC	2 cut(s)	398, 527
DpnII	GATC	2 cut(s)	396, 525
DraIII	CACNNNGTG	1 cut(s)	504
EaeI	YGGCCR	1 cut(s)	495
EciI	GGCGGA	1 cut(s)	149
Ecl136II	GAGCTC	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	228
Eco53kI	GAGCTC	1 cut(s)	226
EcoICRI	GAGCTC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	230
EcoT38I	GRGCYC	1 cut(s)	228
FaeI	CATG	1 cut(s)	79
FaiI	YATR	4 cut(s)	9, 77, 321, 536
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	1 cut(s)	75
Fnu4HI	GCNGC	3 cut(s)	461, 464, 467
FokI	GGATG	2 cut(s)	280, 526
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	3 cut(s)	461, 464, 467
GluI	GCNGC	3 cut(s)	461, 464, 467
GsaI	CCCAGC	1 cut(s)	342
GsuI	CTGGAG	1 cut(s)	214
HaeIII	GGCC	1 cut(s)	497
HapII	CCGG	1 cut(s)	215
Hin1II	CATG	1 cut(s)	79
HinfI	GANTC	3 cut(s)	26, 67, 274
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	3 cut(s)	50, 190, 404
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	1 cut(s)	472
HpyAV	CCTTC	1 cut(s)	415
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4IV	ACGT	1 cut(s)	89
HpyCH4V	TGCA	4 cut(s)	148, 262, 296, 460
HpyF10VI	GCNNNNNNNGC	3 cut(s)	232, 335, 466
HpyF3I	CTNAG	3 cut(s)	252, 366, 371
HpySE526I	ACGT	1 cut(s)	89
Hsp92II	CATG	1 cut(s)	79
Kzo9I	GATC	2 cut(s)	396, 525
LmnI	GCTCC	1 cut(s)	141
Lsp1109I	GCAGC	2 cut(s)	453, 472
LweI	GCATC	1 cut(s)	142
MaeII	ACGT	1 cut(s)	89
MaeIII	GTNAC	2 cut(s)	361, 538
MalI	GATC	2 cut(s)	398, 527
MboI	GATC	2 cut(s)	396, 525
MboII	GAAGA	3 cut(s)	21, 67, 535
MhlI	GDGCHC	3 cut(s)	214, 228, 479
MlsI	TGGCCA	1 cut(s)	497
MluNI	TGGCCA	1 cut(s)	497
MlyI	GAGTC	2 cut(s)	35, 283
MnlI	CCTC	8 cut(s)	16, 124, 132, 180, 301, 366, 382, 411
Mox20I	TGGCCA	1 cut(s)	497
MscI	TGGCCA	1 cut(s)	497
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	1 cut(s)	413
Msp20I	TGGCCA	1 cut(s)	497
MspA1I	CMGCKG	1 cut(s)	466
MspI	CCGG	1 cut(s)	215
MspR9I	CCNGG	2 cut(s)	215, 232
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	3 cut(s)	232, 335, 466
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	2 cut(s)	396, 525
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	2 cut(s)	211, 377
NmuCI	GTSAC	1 cut(s)	361
PfeI	GAWTC	1 cut(s)	67
PflFI	GACNNNGTC	1 cut(s)	88
PflMI	CCANNNNNTGG	1 cut(s)	441
PkrI	GCNGC	3 cut(s)	462, 465, 468
PleI	GAGTC	2 cut(s)	34, 282
PpsI	GAGTC	2 cut(s)	34, 282
PshAI	GACNNNNGTC	1 cut(s)	359
PshBI	ATTAAT	1 cut(s)	411
Psp124BI	GAGCTC	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	230
PspFI	CCCAGC	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	2 cut(s)	211, 377
PstNI	CAGNNNCTG	1 cut(s)	466
PsyI	GACNNNGTC	1 cut(s)	88
RseI	CAYNNNNRTG	1 cut(s)	413
SacI	GAGCTC	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	3 cut(s)	461, 464, 467
Sau3AI	GATC	2 cut(s)	396, 525
SchI	GAGTC	2 cut(s)	35, 283
ScrFI	CCNGG	2 cut(s)	215, 232
SduI	GDGCHC	3 cut(s)	214, 228, 479
SetI	ASST	8 cut(s)	92, 146, 173, 191, 228, 258, 312, 372
SfaNI	GCATC	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	413
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
SsiI	CCGC	4 cut(s)	134, 379, 464, 511
SstI	GAGCTC	1 cut(s)	228
StyD4I	CCNGG	2 cut(s)	213, 230
TaaI	ACNGT	1 cut(s)	544
TaiI	ACGT	1 cut(s)	92
TaqI	TCGA	2 cut(s)	110, 528
TauI	GCSGC	1 cut(s)	466
TfiI	GAWTC	1 cut(s)	67
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	2 cut(s)	370, 409
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	2 cut(s)	460, 466
Tsp45I	GTSAC	1 cut(s)	361
TspRI	CASTG	2 cut(s)	370, 409
Tth111I	GACNNNGTC	1 cut(s)	88
Van91I	CCANNNNNTGG	1 cut(s)	441
VspI	ATTAAT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.