Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8232043.1

Orthogroup ID

OG0031664

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 649

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8232043.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 262 bp

atggagcttctaactggaaaggaggctttggatattggctccttgggatctaatgaaagtttatttcaatgggtggaatcgcggctgagttcaaacaatttagtggatagacggcttgctggaagcttcactgcagagggaatgagggacttgatcaggctaacactacagtgcatgagttttctgggaaaaagacgacccaggatggaaatggttgtggttgagcttgagagaattcaagagaaagaaatggcaatgacca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

87

Amino Acids

9.95

Weight (kDa)

5.45

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031664)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8232043.1_g000001
rosa_samantha	Rh4BG235400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	82
AciI	CCGC	1 cut(s)	82
AclWI	GGATC	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	234
AgsI	TTSAA	3 cut(s)	68, 93, 239
AjnI	CCWGG	1 cut(s)	200
AleI	CACNNNNGTG	1 cut(s)	169
AluBI	AGCT	3 cut(s)	7, 126, 226
AluI	AGCT	3 cut(s)	7, 126, 226
AlwI	GGATC	1 cut(s)	55
ApoI	RAATTY	1 cut(s)	234
BccI	CCATC	1 cut(s)	199
BceAI	ACGGC	1 cut(s)	128
BciT130I	CCWGG	1 cut(s)	202
BclI	TGATCA	1 cut(s)	153
BfmI	CTRYAG	2 cut(s)	132, 167
BisI	GCNGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	84
Bme1390I	CCNGG	1 cut(s)	202
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	202
BpuEI	CTTGAG	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	42, 200
Bse1I	ACTGG	1 cut(s)	19
Bse3DI	GCAATG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	202
BseDI	CCNNGG	2 cut(s)	42, 200
BseGI	GGATG	1 cut(s)	210
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	19
Bsh1236I	CGCG	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	161
Bsp143I	GATC	2 cut(s)	47, 153
BspACI	CCGC	1 cut(s)	82
BspCNI	CTCAG	1 cut(s)	78
BspFNI	CGCG	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	40
BspMAI	CTGCAG	1 cut(s)	136
BspPI	GGATC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	19
BssECI	CCNNGG	2 cut(s)	42, 200
BssMI	GATC	2 cut(s)	47, 153
BssT1I	CCWWGG	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	210
BstFNI	CGCG	1 cut(s)	82
BstKTI	GATC	2 cut(s)	50, 156
BstMBI	GATC	2 cut(s)	47, 153
BstNI	CCWGG	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	200
BstSFI	CTRYAG	2 cut(s)	132, 167
BstUI	CGCG	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	210
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	2 cut(s)	129, 176
Cac8I	GCNNGC	1 cut(s)	117
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	8 cut(s)	7, 26, 39, 85, 115, 126, 160, 226
CviKI_1	RGCY	8 cut(s)	7, 26, 39, 85, 115, 126, 160, 226
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	2 cut(s)	49, 155
DpnII	GATC	2 cut(s)	47, 153
Eco130I	CCWWGG	1 cut(s)	42
EcoRI	GAATTC	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	1 cut(s)	178
FaiI	YATR	1 cut(s)	176
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	1 cut(s)	174
FbaI	TGATCA	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	83
FokI	GGATG	1 cut(s)	217
Fsp4HI	GCNGC	1 cut(s)	83
GluI	GCNGC	1 cut(s)	83
Hin1II	CATG	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	124
HinfI	GANTC	1 cut(s)	77
Hpy188III	TCNNGA	1 cut(s)	239
HpyCH4III	ACNGT	1 cut(s)	171
HpyCH4V	TGCA	2 cut(s)	134, 174
HpyF3I	CTNAG	1 cut(s)	86
Hsp92II	CATG	1 cut(s)	178
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	2 cut(s)	47, 153
LmnI	GCTCC	2 cut(s)	4, 44
LpnPI	CCDG	5 cut(s)	105, 142, 170, 187, 214
MalI	GATC	2 cut(s)	49, 155
MboI	GATC	2 cut(s)	47, 153
MflI	RGATCY	1 cut(s)	47
MluCI	AATT	2 cut(s)	97, 234
MnlI	CCTC	3 cut(s)	16, 130, 138
MslI	CAYNNNNRTG	1 cut(s)	169
MspR9I	CCNGG	1 cut(s)	202
MvaI	CCWGG	1 cut(s)	202
MvnI	CGCG	1 cut(s)	82
NdeII	GATC	2 cut(s)	47, 153
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	1 cut(s)	40
OliI	CACNNNNGTG	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	200
PspN4I	GGNNCC	1 cut(s)	40
PstI	CTGCAG	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	47
RseI	CAYNNNNRTG	1 cut(s)	169
SatI	GCNGC	1 cut(s)	83
Sau3AI	GATC	2 cut(s)	47, 153
ScrFI	CCNGG	1 cut(s)	202
SetI	ASST	3 cut(s)	9, 128, 228
SfcI	CTRYAG	2 cut(s)	132, 167
SmiMI	CAYNNNNRTG	1 cut(s)	169
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	2 cut(s)	97, 234
SsiI	CCGC	1 cut(s)	82
StyD4I	CCNGG	1 cut(s)	200
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	171
TasI	AATT	2 cut(s)	97, 234
TauI	GCSGC	1 cut(s)	85
TfiI	GAWTC	1 cut(s)	77
TscAI	CASTG	2 cut(s)	136, 176
TspDTI	ATGAA	1 cut(s)	69
TspRI	CASTG	2 cut(s)	136, 176
XapI	RAATTY	1 cut(s)	234
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.