Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0031664

Physical Location & Seq

Genomic Coordinates Forward (+)

40148684 .. 40149513

Gene Structure 830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG235400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAAAAAGTGGATTTTTCATCAATACTTGGGTACTCATGTATATGTGCCAATTGATAATAGGGTTGGACCATCTGAGAGAGCTTCATCTGAAGTGAGTGATGTTTACAGCTTTGGTGTTTTCCTAATGGAGCTTCTAACTGGAAAGGAGGCTTTGGATATTGGCTCCTTGGGATCTAATGAAAGTTTATTTCAATGGGTGGAATCGCGGCTGAGTTCAAACAATTTAGTGGATAACCGGCTTGCTGGAAGCTTCACTGCAGAGGGAATGAGGGACTTGATCAGGCTAACACTACAATGCATGAGTTTTCTGGGAAAAAGACGACCCAGGATGGAAATGGTTGTGGTTGAACTTGAGAGAATTCAAGAGAAAGAAATGGCAATGACCACAGTCATGGGTGAGGGAACTGATACAATCACTCTTGGGAGTGTACTATTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

147

Amino Acids

16.58

Weight (kDa)

5.22

Isoelectric Point (pI)

28.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031664)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8232043.1_g000001
rosa_samantha	Rh4BG235400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	208
AciI	CCGC	1 cut(s)	208
AclWI	GGATC	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	360
AcuI	CTGAAG	1 cut(s)	111
AfaI	GTAC	2 cut(s)	34, 432
AgsI	TTSAA	4 cut(s)	194, 219, 350, 365
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	4 cut(s)	83, 111, 133, 252
AluI	AGCT	4 cut(s)	83, 111, 133, 252
AlwI	GGATC	1 cut(s)	181
ApoI	RAATTY	1 cut(s)	360
AspS9I	GGNCC	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	68
BaeI	ACNNNNGTAYC	2 cut(s)	24, 57
BccI	CCATC	2 cut(s)	79, 325
BciT130I	CCWGG	1 cut(s)	328
BclI	TGATCA	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	258
BisI	GCNGC	1 cut(s)	209
BlsI	GCNGC	1 cut(s)	210
Bme1390I	CCNGG	1 cut(s)	328
Bme18I	GGWCC	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	328
BoxI	GACNNNNGTC	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	374
BsaJI	CCNNGG	2 cut(s)	168, 326
Bse118I	RCCGGY	1 cut(s)	237
Bse1I	ACTGG	1 cut(s)	145
Bse3DI	GCAATG	1 cut(s)	387
BseBI	CCWGG	1 cut(s)	328
BseDI	CCNNGG	2 cut(s)	168, 326
BseGI	GGATG	1 cut(s)	336
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	2 cut(s)	66, 203
BseNI	ACTGG	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	238
BslFI	GGGAC	1 cut(s)	287
BsmFI	GGGAC	1 cut(s)	287
Bsp143I	GATC	2 cut(s)	173, 279
BspACI	CCGC	1 cut(s)	208
BspCNI	CTCAG	2 cut(s)	67, 204
BspFNI	CGCG	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	166
BspMAI	CTGCAG	1 cut(s)	262
BspPI	GGATC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	387
BsrFI	RCCGGY	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	145
BssAI	RCCGGY	1 cut(s)	237
BssECI	CCNNGG	2 cut(s)	168, 326
BssMI	GATC	2 cut(s)	173, 279
BssT1I	CCWWGG	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	1 cut(s)	391
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	2 cut(s)	75, 212
BstF5I	GGATG	1 cut(s)	336
BstFNI	CGCG	1 cut(s)	208
BstKTI	GATC	2 cut(s)	176, 282
BstMBI	GATC	2 cut(s)	173, 279
BstNI	CCWGG	1 cut(s)	328
BstPAI	GACNNNNGTC	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	326
BstSFI	CTRYAG	1 cut(s)	258
BstUI	CGCG	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	173
BstXI	CCANNNNNNTGG	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	173
BtsCI	GGATG	1 cut(s)	336
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	243
Cfr10I	RCCGGY	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	68
Csp6I	GTAC	2 cut(s)	33, 431
CviAII	CATG	3 cut(s)	38, 301, 394
CviJI	RGCY	9 cut(s)	83, 111, 133, 152, 165, 211, 241, 252, 286
CviKI_1	RGCY	9 cut(s)	83, 111, 133, 152, 165, 211, 241, 252, 286
CviQI	GTAC	2 cut(s)	33, 431
DdeI	CTNAG	2 cut(s)	75, 212
DpnI	GATC	2 cut(s)	175, 281
DpnII	GATC	2 cut(s)	173, 279
Eco130I	CCWWGG	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	111
EcoRI	GAATTC	1 cut(s)	360
EcoRII	CCWGG	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	3 cut(s)	41, 304, 397
FaiI	YATR	5 cut(s)	39, 43, 45, 302, 395
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	3 cut(s)	37, 300, 393
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	209
FokI	GGATG	1 cut(s)	343
Fsp4HI	GCNGC	1 cut(s)	209
GluI	GCNGC	1 cut(s)	209
HapII	CCGG	1 cut(s)	238
Hin1II	CATG	3 cut(s)	41, 304, 397
HindIII	AAGCTT	1 cut(s)	250
HinfI	GANTC	1 cut(s)	203
HpaII	CCGG	1 cut(s)	238
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	2 cut(s)	106, 431
Hpy188I	TCNGA	2 cut(s)	76, 91
Hpy188III	TCNNGA	1 cut(s)	365
Hpy8I	GTNNAC	2 cut(s)	106, 431
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4V	TGCA	2 cut(s)	260, 300
HpyF3I	CTNAG	2 cut(s)	75, 212
Hsp92II	CATG	3 cut(s)	41, 304, 397
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	2 cut(s)	173, 279
LmnI	GCTCC	2 cut(s)	130, 170
LpnPI	CCDG	7 cut(s)	126, 231, 251, 268, 296, 313, 340
MalI	GATC	2 cut(s)	175, 281
MboI	GATC	2 cut(s)	173, 279
MfeI	CAATTG	1 cut(s)	51
MflI	RGATCY	1 cut(s)	173
MluCI	AATT	3 cut(s)	51, 223, 360
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	4 cut(s)	142, 256, 264, 394
Mph1103I	ATGCAT	1 cut(s)	302
MslI	CAYNNNNRTG	3 cut(s)	42, 295, 392
MspI	CCGG	1 cut(s)	238
MspR9I	CCNGG	1 cut(s)	328
MunI	CAATTG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	328
MvnI	CGCG	1 cut(s)	208
NdeII	GATC	2 cut(s)	173, 279
NlaIII	CATG	3 cut(s)	41, 304, 397
NlaIV	GGNNCC	1 cut(s)	166
NsiI	ATGCAT	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	210
PshAI	GACNNNNGTC	1 cut(s)	389
Psp6I	CCWGG	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	326
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	1 cut(s)	68
PstI	CTGCAG	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	173
RsaI	GTAC	2 cut(s)	34, 432
RsaNI	GTAC	2 cut(s)	33, 431
RseI	CAYNNNNRTG	3 cut(s)	42, 295, 392
SatI	GCNGC	1 cut(s)	209
Sau3AI	GATC	2 cut(s)	173, 279
Sau96I	GGNCC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	328
SetI	ASST	4 cut(s)	85, 113, 135, 254
SfcI	CTRYAG	1 cut(s)	258
SinI	GGWCC	1 cut(s)	68
SmiMI	CAYNNNNRTG	3 cut(s)	42, 295, 392
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	3 cut(s)	51, 223, 360
SsiI	CCGC	1 cut(s)	208
StyD4I	CCNGG	1 cut(s)	326
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	391
TasI	AATT	3 cut(s)	51, 223, 360
TatI	WGTACW	1 cut(s)	430
TauI	GCSGC	1 cut(s)	211
TfiI	GAWTC	1 cut(s)	203
TscAI	CASTG	1 cut(s)	262
TspDTI	ATGAA	4 cut(s)	8, 17, 75, 195
TspRI	CASTG	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	68
XapI	RAATTY	1 cut(s)	360
XcmI	CCANNNNNNNNNTGG	1 cut(s)	334
Zsp2I	ATGCAT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.