Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8249733.1

Orthogroup ID

OG0031299

Physical Location & Seq

Genomic Coordinates Reverse (-)

346 .. 653

Gene Structure 308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8249733.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

atgcccaggccgttacttaacatgcaaagaatgcagccatctcagggcttgactgcatataatcttgcaacacaggcagggatgggtggtggaatgaatcctggtggtatccccatgcagcgtggtgttggtcaggcccatcaccaacaacagttgagaaggaaagatccaggaatggggatgactggataccctccacagcagaaatcaagacgtttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016592 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

73

Amino Acids

8.03

Weight (kDa)

11.89

Isoelectric Point (pI)

53.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031299)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8249733.1_g000001 Rmu_sc0004330.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	161
AfiI	CCNNNNNNNGG	2 cut(s)	44, 176
AjnI	CCWGG	3 cut(s)	5, 100, 169
AlwI	GGATC	1 cut(s)	161
AoxI	GGCC	2 cut(s)	8, 135
ApeKI	GCWGC	2 cut(s)	34, 118
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	134
BbvI	GCAGC	2 cut(s)	46, 130
BccI	CCATC	3 cut(s)	46, 76, 147
BciT130I	CCWGG	3 cut(s)	7, 102, 171
BciVI	GTATCC	2 cut(s)	119, 182
BfuI	GTATCC	2 cut(s)	119, 182
BisI	GCNGC	2 cut(s)	35, 119
BlsI	GCNGC	2 cut(s)	36, 120
Bme1390I	CCNGG	3 cut(s)	7, 102, 171
BmgT120I	GGNCC	1 cut(s)	136
BmrFI	CCNGG	3 cut(s)	7, 102, 171
BsaJI	CCNNGG	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 176
Bse1I	ACTGG	1 cut(s)	190
BseBI	CCWGG	3 cut(s)	7, 102, 171
BseDI	CCNNGG	1 cut(s)	5
BseGI	GGATG	2 cut(s)	87, 186
BseLI	CCNNNNNNNGG	2 cut(s)	44, 176
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	1 cut(s)	190
BseXI	GCAGC	2 cut(s)	46, 130
BshFI	GGCC	2 cut(s)	10, 137
BslI	CCNNNNNNNGG	2 cut(s)	44, 176
BsmI	GAATGC	1 cut(s)	36
BsnI	GGCC	2 cut(s)	10, 137
Bsp143I	GATC	1 cut(s)	166
BspANI	GGCC	2 cut(s)	10, 137
BspCNI	CTCAG	1 cut(s)	55
BspPI	GGATC	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	1 cut(s)	166
Bst2UI	CCWGG	3 cut(s)	7, 102, 171
Bst4CI	ACNGT	1 cut(s)	153
BstAPI	GCANNNNNTGC	1 cut(s)	31
BstDEI	CTNAG	1 cut(s)	42
BstF5I	GGATG	2 cut(s)	87, 186
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 74
BstNI	CCWGG	3 cut(s)	7, 102, 171
BstNSI	RCATGY	1 cut(s)	25
BstSCI	CCNGG	3 cut(s)	5, 100, 169
BstV1I	GCAGC	2 cut(s)	46, 130
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuI	GTATCC	2 cut(s)	119, 182
BsuRI	GGCC	2 cut(s)	10, 137
BtsCI	GGATG	2 cut(s)	87, 186
Cfr13I	GGNCC	1 cut(s)	136
CviAII	CATG	2 cut(s)	22, 115
CviJI	RGCY	4 cut(s)	10, 37, 48, 137
CviKI_1	RGCY	4 cut(s)	10, 37, 48, 137
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
EcoRII	CCWGG	3 cut(s)	5, 100, 169
FaeI	CATG	2 cut(s)	25, 118
FaiI	YATR	4 cut(s)	23, 58, 60, 116
FatI	CATG	2 cut(s)	21, 114
Fnu4HI	GCNGC	2 cut(s)	35, 119
FokI	GGATG	2 cut(s)	94, 193
Fsp4HI	GCNGC	2 cut(s)	35, 119
GluI	GCNGC	2 cut(s)	35, 119
HaeIII	GGCC	2 cut(s)	10, 137
Hin1II	CATG	2 cut(s)	25, 118
HinfI	GANTC	1 cut(s)	97
HphI	GGTGA	1 cut(s)	134
Hpy188I	TCNGA	1 cut(s)	221
Hpy188III	TCNNGA	1 cut(s)	210
HpyAV	CCTTC	1 cut(s)	153
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	5 cut(s)	25, 34, 56, 68, 118
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 74
HpyF3I	CTNAG	1 cut(s)	42
HpySE526I	ACGT	1 cut(s)	214
Hsp92II	CATG	2 cut(s)	25, 118
Kzo9I	GATC	1 cut(s)	166
Lsp1109I	GCAGC	2 cut(s)	46, 130
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	1 cut(s)	12
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MflI	RGATCY	1 cut(s)	166
MnlI	CCTC	1 cut(s)	204
MseI	TTAA	1 cut(s)	18
MspR9I	CCNGG	3 cut(s)	7, 102, 171
Mva1269I	GAATGC	1 cut(s)	36
MvaI	CCWGG	3 cut(s)	7, 102, 171
MwoI	GCNNNNNNNGC	2 cut(s)	31, 74
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	2 cut(s)	25, 118
NspI	RCATGY	1 cut(s)	25
PctI	GAATGC	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	97
PfoI	TCCNGGA	1 cut(s)	169
PkrI	GCNGC	2 cut(s)	36, 120
Psp6I	CCWGG	3 cut(s)	5, 100, 169
PspGI	CCWGG	3 cut(s)	5, 100, 169
PspPI	GGNCC	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	166
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	2 cut(s)	35, 119
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	1 cut(s)	136
ScrFI	CCNGG	3 cut(s)	7, 102, 171
SetI	ASST	1 cut(s)	217
StyD4I	CCNGG	3 cut(s)	5, 100, 169
TaaI	ACNGT	1 cut(s)	153
TaiI	ACGT	1 cut(s)	217
TfiI	GAWTC	1 cut(s)	97
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TseI	GCWGC	2 cut(s)	34, 118
TspDTI	ATGAA	1 cut(s)	110
XceI	RCATGY	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.