Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004330.1

Orthogroup ID

OG0031299

Physical Location & Seq

Genomic Coordinates Forward (+)

7350 .. 8965

Gene Structure 1616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004330.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atggccagtcaaggagaaaaggcagtgaattaccttactcgtccggttgacacaactacagactttgaagggacaaccagccttcaaccttcacaaccggtatcgtctggaaatgcaggaagcatgtcaggtgctcatgtagggaacagatctatgcccaggccgttacttaacatgcaaagaatgcagccatctcagggcttgactgcatataatcttgcaacacaggcagggatgggtggtggaatgaatcctggtggtatccccatgcagcgtggtgttggtcaggcccatcaccaacaacagttgagaaggaaagatccaggaatggggatgactggataccctccacagcagaaatcaagacgtttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016592 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

124

Amino Acids

13.24

Weight (kDa)

10.9

Isoelectric Point (pI)

52.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031299)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8249733.1_g000001 Rmu_sc0004330.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	314
AcoI	YGGCCR	1 cut(s)	3
AfiI	CCNNNNNNNGG	2 cut(s)	197, 329
AgeI	ACCGGT	1 cut(s)	97
AgsI	TTSAA	2 cut(s)	68, 86
AjnI	CCWGG	3 cut(s)	158, 253, 322
Alw21I	GWGCWC	1 cut(s)	136
AlwI	GGATC	1 cut(s)	314
AoxI	GGCC	3 cut(s)	3, 161, 288
ApeKI	GCWGC	2 cut(s)	187, 271
AsiGI	ACCGGT	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	289
AsuHPI	GGTGA	1 cut(s)	287
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	2 cut(s)	199, 283
BccI	CCATC	3 cut(s)	199, 229, 300
BceAI	ACGGC	1 cut(s)	148
BciT130I	CCWGG	3 cut(s)	160, 255, 324
BciVI	GTATCC	2 cut(s)	272, 335
BfmI	CTRYAG	1 cut(s)	57
BfuI	GTATCC	2 cut(s)	272, 335
BglII	AGATCT	1 cut(s)	149
BisI	GCNGC	2 cut(s)	188, 272
BlsI	GCNGC	2 cut(s)	189, 273
Bme1390I	CCNGG	3 cut(s)	160, 255, 324
BmgT120I	GGNCC	1 cut(s)	289
BmrFI	CCNGG	3 cut(s)	160, 255, 324
BsaJI	CCNNGG	1 cut(s)	158
BsaWI	WCCGGW	2 cut(s)	43, 97
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 329
Bse118I	RCCGGY	1 cut(s)	97
Bse1I	ACTGG	2 cut(s)	6, 343
BseBI	CCWGG	3 cut(s)	160, 255, 324
BseDI	CCNNGG	1 cut(s)	158
BseGI	GGATG	2 cut(s)	240, 339
BseLI	CCNNNNNNNGG	2 cut(s)	197, 329
BseMII	CTCAG	1 cut(s)	209
BseNI	ACTGG	2 cut(s)	6, 343
BseXI	GCAGC	2 cut(s)	199, 283
BshFI	GGCC	3 cut(s)	5, 163, 290
BshTI	ACCGGT	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	2 cut(s)	44, 98
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	2 cut(s)	197, 329
BsmFI	GGGAC	1 cut(s)	85
BsmI	GAATGC	1 cut(s)	189
BsnI	GGCC	3 cut(s)	5, 163, 290
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	2 cut(s)	149, 319
BspANI	GGCC	3 cut(s)	5, 163, 290
BspCNI	CTCAG	1 cut(s)	208
BspPI	GGATC	1 cut(s)	314
BsrFI	RCCGGY	1 cut(s)	97
BsrI	ACTGG	2 cut(s)	6, 343
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	158
BssMI	GATC	2 cut(s)	149, 319
Bst2UI	CCWGG	3 cut(s)	160, 255, 324
Bst4CI	ACNGT	1 cut(s)	306
BstAPI	GCANNNNNTGC	1 cut(s)	184
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	2 cut(s)	240, 339
BstKTI	GATC	2 cut(s)	152, 322
BstMBI	GATC	2 cut(s)	149, 319
BstMWI	GCNNNNNNNGC	2 cut(s)	184, 227
BstNI	CCWGG	3 cut(s)	160, 255, 324
BstNSI	RCATGY	2 cut(s)	127, 178
BstSCI	CCNGG	3 cut(s)	158, 253, 322
BstSFI	CTRYAG	1 cut(s)	57
BstV1I	GCAGC	2 cut(s)	199, 283
BstX2I	RGATCY	2 cut(s)	149, 319
BstYI	RGATCY	2 cut(s)	149, 319
BsuI	GTATCC	2 cut(s)	272, 335
BsuRI	GGCC	3 cut(s)	5, 163, 290
BtsCI	GGATG	2 cut(s)	240, 339
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	30
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	289
CspAI	ACCGGT	1 cut(s)	97
CviAII	CATG	4 cut(s)	124, 137, 175, 268
CviJI	RGCY	6 cut(s)	5, 81, 163, 190, 201, 290
CviKI_1	RGCY	6 cut(s)	5, 81, 163, 190, 201, 290
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	2 cut(s)	151, 321
DpnII	GATC	2 cut(s)	149, 319
EaeI	YGGCCR	1 cut(s)	3
EcoRII	CCWGG	3 cut(s)	158, 253, 322
FaeI	CATG	4 cut(s)	127, 140, 178, 271
FaiI	YATR	7 cut(s)	125, 138, 155, 176, 211, 213, 269
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	4 cut(s)	123, 136, 174, 267
Fnu4HI	GCNGC	2 cut(s)	188, 272
FokI	GGATG	2 cut(s)	247, 346
Fsp4HI	GCNGC	2 cut(s)	188, 272
GluI	GCNGC	2 cut(s)	188, 272
HaeIII	GGCC	3 cut(s)	5, 163, 290
HapII	CCGG	2 cut(s)	44, 98
Hin1II	CATG	4 cut(s)	127, 140, 178, 271
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	1 cut(s)	250
HpaII	CCGG	2 cut(s)	44, 98
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	374
Hpy188III	TCNNGA	2 cut(s)	108, 363
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	4 cut(s)	62, 92, 99, 306
HpyCH4III	ACNGT	1 cut(s)	306
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	6 cut(s)	116, 178, 187, 209, 221, 271
HpyF10VI	GCNNNNNNNGC	2 cut(s)	184, 227
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	1 cut(s)	367
Hsp92II	CATG	4 cut(s)	127, 140, 178, 271
Kzo9I	GATC	2 cut(s)	149, 319
Lsp1109I	GCAGC	2 cut(s)	199, 283
MaeII	ACGT	1 cut(s)	367
MaeIII	GTNAC	1 cut(s)	165
MalI	GATC	2 cut(s)	151, 321
MboI	GATC	2 cut(s)	149, 319
MflI	RGATCY	2 cut(s)	149, 319
MhlI	GDGCHC	1 cut(s)	136
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	28
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	1 cut(s)	357
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	171
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	44, 98
MspR9I	CCNGG	3 cut(s)	160, 255, 324
Mva1269I	GAATGC	1 cut(s)	189
MvaI	CCWGG	3 cut(s)	160, 255, 324
MwoI	GCNNNNNNNGC	2 cut(s)	184, 227
NdeII	GATC	2 cut(s)	149, 319
NlaIII	CATG	4 cut(s)	127, 140, 178, 271
NspI	RCATGY	2 cut(s)	127, 178
PctI	GAATGC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	250
PfoI	TCCNGGA	1 cut(s)	322
PinAI	ACCGGT	1 cut(s)	97
PkrI	GCNGC	2 cut(s)	189, 273
Psp6I	CCWGG	3 cut(s)	158, 253, 322
PspGI	CCWGG	3 cut(s)	158, 253, 322
PspPI	GGNCC	1 cut(s)	289
PsuI	RGATCY	2 cut(s)	149, 319
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	2 cut(s)	188, 272
Sau3AI	GATC	2 cut(s)	149, 319
Sau96I	GGNCC	1 cut(s)	289
ScrFI	CCNGG	3 cut(s)	160, 255, 324
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	4 cut(s)	36, 91, 133, 370
SfcI	CTRYAG	1 cut(s)	57
Sse9I	AATT	1 cut(s)	28
StyD4I	CCNGG	3 cut(s)	158, 253, 322
TaaI	ACNGT	1 cut(s)	306
TaiI	ACGT	1 cut(s)	370
TasI	AATT	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	2 cut(s)	187, 271
TspDTI	ATGAA	1 cut(s)	263
TspRI	CASTG	1 cut(s)	30
XceI	RCATGY	2 cut(s)	127, 178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.