Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8279309.1

Orthogroup ID

OG0017631

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 845

Gene Structure 845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8279309.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 845 bp

aaatatgcattttgctggaattgtactgaggaacctcaccggcctgtggactgtaagactgtgaaacaatggattttgaagaacagctccgaagctgagaacacgaactggatattggccaactctaagccatgtccaaagtgccagcgaccgattgagaaaaaccaagggtgtatgcacatgacatgcacaccgccttgtaagtttcacttctgctggctatgccttggtccgtggtccaaacatggtgagaggacaggtggttattatgcatgtaacagctaccagaaagctaagaaagagggaacttacgatgaggaggagagtaggagagagatggctaagagttctttggagaaatacacacattattttgagcgctggcagagcaatcaatcctcgaggcagaaggctcttgaggatttacatcaaatgcagactgtgaacatggacaagatgagagagaatcagggcataggcgagggtgttgcccagtttttagtgaaggcttggcaacagattgttgaatgtaggagagtgctgagatggacttatgcgtatgggtactacctacctgaccatgacactgctaagaagcaactttttgagtacttgcagggtgaggcagaatctggcttggaaaggcttcatcaatgtgccgagaaggagctacagccgttcctcgaggaagatggcccgtccaaagacttcaacgactaccaaacaaagctagctggattgactgccgtgactaaaaactacttcgagaatctggtaagggcattagaaaatggcttatcagatgtggagtctcagcaatctggcagtgcggcaaaaggtagaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

281

Amino Acids

32.68

Weight (kDa)

7.16

Isoelectric Point (pI)

59.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017631)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g24920
rosa_chinensis	RchiOBHm_Chr5g0044711
rosa_laevigata	RLG00000034290
rosa_multiflora	Rmu_co8279309.1_g000001 Rmu_sc0007318.1_g000013
rosa_roxburghii	Rroxscaffold_1G00036320
rosa_rugosa	Rorug05G0216800
rosa_samantha	Rh5AG300200 Rh5BG307000 Rh5CG334100 Rh5DG317100
rosa_wichuraiana	Rw5G027770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	2 cut(s)	400, 683
AciI	CCGC	2 cut(s)	194, 830
AcoI	YGGCCR	1 cut(s)	117
AfaI	GTAC	3 cut(s)	25, 566, 611
AfeI	AGCGCT	1 cut(s)	380
AfiI	CCNNNNNNNGG	1 cut(s)	46
AgsI	TTSAA	3 cut(s)	79, 527, 712
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AluBI	AGCT	7 cut(s)	87, 95, 282, 293, 670, 730, 734
AluI	AGCT	7 cut(s)	87, 95, 282, 293, 670, 730, 734
Alw26I	GTCTC	1 cut(s)	816
AlwNI	CAGNNNCTG	1 cut(s)	632
Ama87I	CYCGRG	2 cut(s)	400, 683
Aor51HI	AGCGCT	1 cut(s)	380
AoxI	GGCC	3 cut(s)	41, 117, 694
Asp700I	GAANNNNTTC	1 cut(s)	645
AspLEI	GCGC	1 cut(s)	381
AspS9I	GGNCC	3 cut(s)	230, 237, 695
AsuHPI	GGTGA	3 cut(s)	29, 260, 632
AsuNHI	GCTAGC	1 cut(s)	730
AvaI	CYCGRG	2 cut(s)	400, 683
AvaII	GGWCC	2 cut(s)	230, 237
BalI	TGGCCA	1 cut(s)	119
BccI	CCATC	3 cut(s)	331, 540, 686
BceAI	ACGGC	2 cut(s)	661, 731
BcgI	CGANNNNNNTGC	2 cut(s)	470, 504
BcoDI	GTCTC	1 cut(s)	816
BfaI	CTAG	1 cut(s)	731
BfmI	CTRYAG	1 cut(s)	671
BfoI	RGCGCY	1 cut(s)	382
BisI	GCNGC	1 cut(s)	831
BlsI	GCNGC	1 cut(s)	832
BmcAI	AGTACT	1 cut(s)	611
Bme18I	GGWCC	2 cut(s)	230, 237
BmeT110I	CYCGRG	2 cut(s)	400, 683
BmgT120I	GGNCC	3 cut(s)	230, 237, 695
BmiI	GGNNCC	1 cut(s)	33
BmrI	ACTGGG	1 cut(s)	487
BmtI	GCTAGC	1 cut(s)	734
BmuI	ACTGGG	1 cut(s)	487
BpuEI	CTTGAG	1 cut(s)	437
BsaBI	GATNNNNATC	1 cut(s)	426
BsaJI	CCNNGG	3 cut(s)	166, 226, 233
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse118I	RCCGGY	1 cut(s)	39
Bse1I	ACTGG	2 cut(s)	113, 493
Bse8I	GATNNNNATC	1 cut(s)	426
BseDI	CCNNGG	3 cut(s)	166, 226, 233
BseJI	GATNNNNATC	1 cut(s)	426
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMII	CTCAG	4 cut(s)	18, 87, 533, 827
BseNI	ACTGG	2 cut(s)	113, 493
BseRI	GAGGAG	2 cut(s)	332, 335
Bsh1285I	CGRYCG	1 cut(s)	152
BshFI	GGCC	3 cut(s)	43, 119, 696
BsiEI	CGRYCG	1 cut(s)	152
BsiHKCI	CYCGRG	2 cut(s)	400, 683
BsiSI	CCGG	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmAI	GTCTC	1 cut(s)	816
BsnI	GGCC	3 cut(s)	43, 119, 696
BsoBI	CYCGRG	2 cut(s)	400, 683
BspACI	CCGC	2 cut(s)	194, 830
BspANI	GGCC	3 cut(s)	43, 119, 696
BspCNI	CTCAG	4 cut(s)	19, 88, 534, 826
BspLI	GGNNCC	1 cut(s)	33
BspOI	GCTAGC	1 cut(s)	734
BsrFI	RCCGGY	1 cut(s)	39
BsrI	ACTGG	2 cut(s)	113, 493
BssAI	RCCGGY	1 cut(s)	39
BssECI	CCNNGG	3 cut(s)	166, 226, 233
BssT1I	CCWWGG	2 cut(s)	166, 226
Bst4CI	ACNGT	3 cut(s)	53, 61, 442
BstC8I	GCNNGC	4 cut(s)	146, 218, 383, 732
BstDEI	CTNAG	8 cut(s)	27, 96, 126, 294, 342, 542, 591, 813
BstDSI	CCRYGG	1 cut(s)	233
BstH2I	RGCGCY	1 cut(s)	382
BstHHI	GCGC	1 cut(s)	381
BstMAI	GTCTC	1 cut(s)	816
BstMCI	CGRYCG	1 cut(s)	152
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 387
BstNSI	RCATGY	2 cut(s)	189, 276
BstSFI	CTRYAG	1 cut(s)	671
BsuRI	GGCC	3 cut(s)	43, 119, 696
BtgI	CCRYGG	1 cut(s)	233
BtsI	GCAGTG	2 cut(s)	585, 832
BtsIMutI	CAGTG	2 cut(s)	585, 832
Cac8I	GCNNGC	4 cut(s)	146, 218, 383, 732
CaiI	CAGNNNCTG	1 cut(s)	632
CfoI	GCGC	1 cut(s)	381
Cfr10I	RCCGGY	1 cut(s)	39
Cfr13I	GGNCC	3 cut(s)	230, 237, 695
Csp6I	GTAC	3 cut(s)	24, 565, 610
CviAII	CATG	7 cut(s)	132, 181, 186, 245, 273, 448, 581
CviQI	GTAC	3 cut(s)	24, 565, 610
DdeI	CTNAG	8 cut(s)	27, 96, 126, 294, 342, 542, 591, 813
EaeI	YGGCCR	1 cut(s)	117
Eco130I	CCWWGG	2 cut(s)	166, 226
Eco47I	GGWCC	2 cut(s)	230, 237
Eco47III	AGCGCT	1 cut(s)	380
Eco88I	CYCGRG	2 cut(s)	400, 683
EcoT14I	CCWWGG	2 cut(s)	166, 226
EcoT22I	ATGCAT	2 cut(s)	10, 274
ErhI	CCWWGG	2 cut(s)	166, 226
FaeI	CATG	7 cut(s)	135, 184, 189, 248, 276, 451, 584
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FatI	CATG	7 cut(s)	131, 180, 185, 244, 272, 447, 580
Fnu4HI	GCNGC	1 cut(s)	831
Fsp4HI	GCNGC	1 cut(s)	831
FspBI	CTAG	1 cut(s)	731
GlaI	GCGC	1 cut(s)	380
GluI	GCNGC	1 cut(s)	831
HaeII	RGCGCY	1 cut(s)	382
HaeIII	GGCC	3 cut(s)	43, 119, 696
HapII	CCGG	1 cut(s)	40
HhaI	GCGC	1 cut(s)	381
Hin1II	CATG	7 cut(s)	135, 184, 189, 248, 276, 451, 584
Hin6I	GCGC	1 cut(s)	379
HinP1I	GCGC	1 cut(s)	379
HinfI	GANTC	4 cut(s)	466, 629, 769, 809
HpaII	CCGG	1 cut(s)	40
HphI	GGTGA	3 cut(s)	29, 260, 632
Hpy166II	GTNNAC	2 cut(s)	49, 445
Hpy188I	TCNGA	2 cut(s)	91, 802
Hpy188III	TCNNGA	2 cut(s)	416, 766
Hpy8I	GTNNAC	2 cut(s)	49, 445
HpyAV	CCTTC	3 cut(s)	403, 499, 658
HpyCH4III	ACNGT	3 cut(s)	53, 61, 442
HpyCH4V	TGCA	6 cut(s)	8, 178, 189, 272, 436, 616
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 387
HpyF3I	CTNAG	8 cut(s)	27, 96, 126, 294, 342, 542, 591, 813
Hsp92II	CATG	7 cut(s)	135, 184, 189, 248, 276, 451, 584
HspAI	GCGC	1 cut(s)	379
LmnI	GCTCC	2 cut(s)	92, 667
MaeI	CTAG	1 cut(s)	731
MaeIII	GTNAC	2 cut(s)	275, 748
MboII	GAAGA	2 cut(s)	91, 701
MlsI	TGGCCA	1 cut(s)	119
MluCI	AATT	1 cut(s)	19
MluNI	TGGCCA	1 cut(s)	119
MlyI	GAGTC	1 cut(s)	818
Mox20I	TGGCCA	1 cut(s)	119
Mph1103I	ATGCAT	2 cut(s)	10, 274
MroXI	GAANNNNTTC	1 cut(s)	645
MscI	TGGCCA	1 cut(s)	119
MslI	CAYNNNNRTG	1 cut(s)	654
Msp20I	TGGCCA	1 cut(s)	119
MspI	CCGG	1 cut(s)	40
MwoI	GCNNNNNNNGC	2 cut(s)	222, 387
NheI	GCTAGC	1 cut(s)	730
NlaIII	CATG	7 cut(s)	135, 184, 189, 248, 276, 451, 584
NlaIV	GGNNCC	1 cut(s)	33
NmeAIII	GCCGAG	1 cut(s)	685
NmuCI	GTSAC	1 cut(s)	748
NsiI	ATGCAT	2 cut(s)	10, 274
NspI	RCATGY	2 cut(s)	189, 276
PaeR7I	CTCGAG	2 cut(s)	400, 683
PdmI	GAANNNNTTC	1 cut(s)	645
PfeI	GAWTC	3 cut(s)	466, 629, 769
PkrI	GCNGC	1 cut(s)	832
PleI	GAGTC	1 cut(s)	817
PpsI	GAGTC	1 cut(s)	817
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	3 cut(s)	230, 237, 695
PspXI	VCTCGAGB	2 cut(s)	400, 683
PstNI	CAGNNNCTG	1 cut(s)	632
RsaI	GTAC	3 cut(s)	25, 566, 611
RsaNI	GTAC	3 cut(s)	24, 565, 610
RseI	CAYNNNNRTG	1 cut(s)	654
SatI	GCNGC	1 cut(s)	831
Sau96I	GGNCC	3 cut(s)	230, 237, 695
ScaI	AGTACT	1 cut(s)	611
SchI	GAGTC	1 cut(s)	818
SfcI	CTRYAG	1 cut(s)	671
Sfr274I	CTCGAG	2 cut(s)	400, 683
SinI	GGWCC	2 cut(s)	230, 237
SlaI	CTCGAG	2 cut(s)	400, 683
SmiMI	CAYNNNNRTG	1 cut(s)	654
SmlI	CTYRAG	3 cut(s)	400, 416, 683
SmoI	CTYRAG	3 cut(s)	400, 416, 683
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	2 cut(s)	194, 830
SspMI	CTAG	1 cut(s)	731
StyI	CCWWGG	2 cut(s)	166, 226
TaaI	ACNGT	3 cut(s)	53, 61, 442
TaqI	TCGA	3 cut(s)	401, 684, 765
TaqII	GACCGA	1 cut(s)	166
TasI	AATT	1 cut(s)	19
TatI	WGTACW	2 cut(s)	23, 609
TauI	GCSGC	1 cut(s)	833
TfiI	GAWTC	3 cut(s)	466, 629, 769
TscAI	CASTG	2 cut(s)	592, 832
TseFI	GTSAC	1 cut(s)	748
Tsp45I	GTSAC	1 cut(s)	748
TspDTI	ATGAA	1 cut(s)	638
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	2 cut(s)	592, 832
VpaK11BI	GGWCC	2 cut(s)	230, 237
XceI	RCATGY	2 cut(s)	189, 276
XhoI	CTCGAG	2 cut(s)	400, 683
XmnI	GAANNNNTTC	1 cut(s)	645
XspI	CTAG	1 cut(s)	731
ZrmI	AGTACT	1 cut(s)	611
Zsp2I	ATGCAT	2 cut(s)	10, 274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.