Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8289341.1

Orthogroup ID

OG0031329

Physical Location & Seq

Genomic Coordinates Reverse (-)

409 .. 858

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8289341.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atggcaaggctcataagtgcacttgacacacacttgagtgtaagcactctagcaggcacccctggctatgttccaccagaatactaccaaagtttccgatgcactgcaaaaggcgatgtctattcatttggggttgtcctattggagcttgtgacaggaaagcgcccaacggacaaggaggacttcggggatactaatctagtggggtgggcgaaaatgaaagtcagagaagggaaacagatggaagtgatagaccaggacttggttttggcagccaaaggaagtgaccaagcagaagccgaagaagtgaaggaaatggtaaggtatttggaagtaacacttcgatgcgttgatgacttcccttccaagaggcctaacatgttgcaggtggtggccttgcttcgcgagttgatgcccgaatcagcaagtgggagcagcaacagcgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

149

Amino Acids

16.41

Weight (kDa)

4.94

Isoelectric Point (pI)

35.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031329)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8289341.1_g000001 Rmu_sc0004956.1_g000018

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	376
Acc36I	ACCTGC	1 cut(s)	376
AccB1I	GGYRCC	1 cut(s)	56
AccB7I	CCANNNNNTGG	1 cut(s)	262
AccII	CGCG	1 cut(s)	405
AfeI	AGCGCT	1 cut(s)	445
AfiI	CCNNNNNNNGG	1 cut(s)	262
AflIII	ACRYGT	1 cut(s)	378
AjnI	CCWGG	2 cut(s)	61, 255
AleI	CACNNNNGTG	1 cut(s)	36
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
Alw21I	GWGCWC	1 cut(s)	22
Alw44I	GTGCAC	1 cut(s)	18
Aor51HI	AGCGCT	1 cut(s)	445
AoxI	GGCC	2 cut(s)	371, 393
ApaLI	GTGCAC	1 cut(s)	18
ApeKI	GCWGC	2 cut(s)	272, 435
AspLEI	GCGC	2 cut(s)	165, 446
BaeGI	GKGCMC	1 cut(s)	22
BanI	GGYRCC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	22
BbvI	GCAGC	1 cut(s)	284
BccI	CCATC	1 cut(s)	235
BciT130I	CCWGG	2 cut(s)	63, 257
BciVI	GTATCC	1 cut(s)	184
BfaI	CTAG	2 cut(s)	50, 200
BfoI	RGCGCY	2 cut(s)	166, 447
BfuAI	ACCTGC	1 cut(s)	376
BfuI	GTATCC	1 cut(s)	184
BisI	GCNGC	2 cut(s)	273, 436
BlsI	GCNGC	2 cut(s)	274, 437
Bme1390I	CCNGG	2 cut(s)	63, 257
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	2 cut(s)	63, 257
BmsI	GCATC	3 cut(s)	89, 335, 402
BpuEI	CTTGAG	1 cut(s)	55
BsaBI	GATNNNNATC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse8I	GATNNNNATC	1 cut(s)	195
BseBI	CCWGG	2 cut(s)	63, 257
BseDI	CCNNGG	1 cut(s)	61
BseJI	GATNNNNATC	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseSI	GKGCMC	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	284
Bsh1236I	CGCG	1 cut(s)	405
BshFI	GGCC	2 cut(s)	373, 395
BshNI	GGYRCC	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	262
BsnI	GGCC	2 cut(s)	373, 395
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp68I	TCGCGA	1 cut(s)	405
BspANI	GGCC	2 cut(s)	373, 395
BspFNI	CGCG	1 cut(s)	405
BspLI	GGNNCC	1 cut(s)	58
BspMI	ACCTGC	1 cut(s)	376
BspT107I	GGYRCC	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	61
Bst2UI	CCWGG	2 cut(s)	63, 257
BstC8I	GCNNGC	1 cut(s)	55
BstFNI	CGCG	1 cut(s)	405
BstH2I	RGCGCY	2 cut(s)	166, 447
BstHHI	GCGC	2 cut(s)	165, 446
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 441
BstNI	CCWGG	2 cut(s)	63, 257
BstNSI	RCATGY	1 cut(s)	382
BstSCI	CCNGG	2 cut(s)	61, 255
BstSLI	GKGCMC	1 cut(s)	22
BstUI	CGCG	1 cut(s)	405
BstV1I	GCAGC	1 cut(s)	284
BsuI	GTATCC	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	373, 395
BtgZI	GCGATG	1 cut(s)	129
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
BtuMI	TCGCGA	1 cut(s)	405
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	1 cut(s)	55
CfoI	GCGC	2 cut(s)	165, 446
CviAII	CATG	1 cut(s)	379
CviJI	RGCY	7 cut(s)	10, 66, 148, 275, 299, 373, 395
CviKI_1	RGCY	7 cut(s)	10, 66, 148, 275, 299, 373, 395
Eco147I	AGGCCT	1 cut(s)	373
Eco47III	AGCGCT	1 cut(s)	445
EcoRII	CCWGG	2 cut(s)	61, 255
FaeI	CATG	1 cut(s)	382
FaiI	YATR	3 cut(s)	14, 69, 380
FalI	AAGNNNNNCTT	4 cut(s)	167, 199, 324, 356
FatI	CATG	1 cut(s)	378
Fnu4HI	GCNGC	2 cut(s)	273, 436
Fsp4HI	GCNGC	2 cut(s)	273, 436
FspBI	CTAG	2 cut(s)	50, 200
GlaI	GCGC	2 cut(s)	164, 445
GluI	GCNGC	2 cut(s)	273, 436
HaeII	RGCGCY	2 cut(s)	166, 447
HaeIII	GGCC	2 cut(s)	373, 395
HhaI	GCGC	2 cut(s)	165, 446
Hin1II	CATG	1 cut(s)	382
Hin6I	GCGC	2 cut(s)	163, 444
HinP1I	GCGC	2 cut(s)	163, 444
HinfI	GANTC	1 cut(s)	419
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188I	TCNGA	2 cut(s)	98, 227
Hpy188III	TCNNGA	1 cut(s)	404
Hpy8I	GTNNAC	1 cut(s)	20
HpyAV	CCTTC	3 cut(s)	224, 304, 372
HpyCH4V	TGCA	4 cut(s)	20, 102, 107, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 441
Hsp92II	CATG	1 cut(s)	382
HspAI	GCGC	2 cut(s)	163, 444
LmnI	GCTCC	2 cut(s)	145, 432
LpnPI	CCDG	8 cut(s)	39, 48, 75, 90, 141, 242, 269, 371
Lsp1109I	GCAGC	1 cut(s)	284
LweI	GCATC	3 cut(s)	89, 335, 402
MaeI	CTAG	2 cut(s)	50, 200
MaeIII	GTNAC	3 cut(s)	151, 284, 334
MboII	GAAGA	1 cut(s)	314
MhlI	GDGCHC	1 cut(s)	22
MnlI	CCTC	2 cut(s)	172, 363
MslI	CAYNNNNRTG	2 cut(s)	36, 343
MspR9I	CCNGG	2 cut(s)	63, 257
MvaI	CCWGG	2 cut(s)	63, 257
MvnI	CGCG	1 cut(s)	405
MwoI	GCNNNNNNNGC	2 cut(s)	63, 441
NlaIII	CATG	1 cut(s)	382
NlaIV	GGNNCC	1 cut(s)	58
NmuCI	GTSAC	2 cut(s)	151, 284
NruI	TCGCGA	1 cut(s)	405
NspI	RCATGY	1 cut(s)	382
OliI	CACNNNNGTG	1 cut(s)	36
PaqCI	CACCTGC	1 cut(s)	376
PceI	AGGCCT	1 cut(s)	373
PciI	ACATGT	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	419
PflMI	CCANNNNNTGG	1 cut(s)	262
PkrI	GCNGC	2 cut(s)	274, 437
PscI	ACATGT	1 cut(s)	378
Psp6I	CCWGG	2 cut(s)	61, 255
PspGI	CCWGG	2 cut(s)	61, 255
PspN4I	GGNNCC	1 cut(s)	58
RruI	TCGCGA	1 cut(s)	405
RseI	CAYNNNNRTG	2 cut(s)	36, 343
SatI	GCNGC	2 cut(s)	273, 436
ScrFI	CCNGG	2 cut(s)	63, 257
SduI	GDGCHC	1 cut(s)	22
SetI	ASST	3 cut(s)	150, 326, 390
SfaNI	GCATC	3 cut(s)	89, 335, 402
SmiMI	CAYNNNNRTG	2 cut(s)	36, 343
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
SseBI	AGGCCT	1 cut(s)	373
SspMI	CTAG	2 cut(s)	50, 200
StuI	AGGCCT	1 cut(s)	373
StyD4I	CCNGG	2 cut(s)	61, 255
TaqI	TCGA	1 cut(s)	343
TfiI	GAWTC	1 cut(s)	419
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	2 cut(s)	151, 284
TseI	GCWGC	2 cut(s)	272, 435
Tsp45I	GTSAC	2 cut(s)	151, 284
TspDTI	ATGAA	2 cut(s)	114, 233
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	1 cut(s)	109
Van91I	CCANNNNNTGG	1 cut(s)	262
VneI	GTGCAC	1 cut(s)	18
XceI	RCATGY	1 cut(s)	382
XspI	CTAG	2 cut(s)	50, 200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.