Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004956.1

Orthogroup ID

OG0031329

Physical Location & Seq

Genomic Coordinates Reverse (-)

91754 .. 92263

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004956.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgaaatcaagcaatgtattgttggacaatgaaatggaagcaagagtttccgattttggaatggcaaggctcataagtgcacttgacacacacttgagtgtaagcactctagcaggcacccctggctatgttccaccagaatactaccaaagtttccgatgcactgcaaaaggcgatgtctattcatttggggttgtcctattggagcttgtgacaggaaagcgcccaacggacaaggaggacttcggggatactaatctagtggggtgggcgaaaatgaaagtcagagaagggaaacagatggaagtgatagaccaggacttggttttggcagccaaaggaagtgaccaagcagaagccgaagaagtgaaggaaatggtaaggtatttggaagtaacacttcgatgcgttgatgacttcccttccaagaggcctaacatgttgcaggtggtggccttgcttcgcgagttgatgcccgaatcagcaagtgggagcagcaacagcgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

169

Amino Acids

18.63

Weight (kDa)

4.81

Isoelectric Point (pI)

33.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031329)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8289341.1_g000001 Rmu_sc0004956.1_g000018

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	436
Acc36I	ACCTGC	1 cut(s)	436
AccB1I	GGYRCC	1 cut(s)	116
AccB7I	CCANNNNNTGG	1 cut(s)	322
AccII	CGCG	1 cut(s)	465
AfeI	AGCGCT	1 cut(s)	505
AfiI	CCNNNNNNNGG	1 cut(s)	322
AflIII	ACRYGT	1 cut(s)	438
AjnI	CCWGG	2 cut(s)	121, 315
AleI	CACNNNNGTG	1 cut(s)	96
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
Alw21I	GWGCWC	1 cut(s)	82
Alw44I	GTGCAC	1 cut(s)	78
Aor51HI	AGCGCT	1 cut(s)	505
AoxI	GGCC	2 cut(s)	431, 453
ApaLI	GTGCAC	1 cut(s)	78
ApeKI	GCWGC	2 cut(s)	332, 495
AspLEI	GCGC	2 cut(s)	225, 506
BaeGI	GKGCMC	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	344
BccI	CCATC	1 cut(s)	295
BciT130I	CCWGG	2 cut(s)	123, 317
BciVI	GTATCC	1 cut(s)	244
BfaI	CTAG	2 cut(s)	110, 260
BfoI	RGCGCY	2 cut(s)	226, 507
BfuAI	ACCTGC	1 cut(s)	436
BfuI	GTATCC	1 cut(s)	244
BisI	GCNGC	2 cut(s)	333, 496
BlsI	GCNGC	2 cut(s)	334, 497
Bme1390I	CCNGG	2 cut(s)	123, 317
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	2 cut(s)	123, 317
BmsI	GCATC	3 cut(s)	149, 395, 462
BpuEI	CTTGAG	1 cut(s)	115
BsaBI	GATNNNNATC	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse3DI	GCAATG	1 cut(s)	19
Bse8I	GATNNNNATC	1 cut(s)	255
BseBI	CCWGG	2 cut(s)	123, 317
BseDI	CCNNGG	1 cut(s)	121
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMI	GCAATG	1 cut(s)	19
BseSI	GKGCMC	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	344
Bsh1236I	CGCG	1 cut(s)	465
BshFI	GGCC	2 cut(s)	433, 455
BshNI	GGYRCC	1 cut(s)	116
BsiHKAI	GWGCWC	1 cut(s)	82
BslI	CCNNNNNNNGG	1 cut(s)	322
BsnI	GGCC	2 cut(s)	433, 455
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp68I	TCGCGA	1 cut(s)	465
BspANI	GGCC	2 cut(s)	433, 455
BspFNI	CGCG	1 cut(s)	465
BspLI	GGNNCC	1 cut(s)	118
BspMI	ACCTGC	1 cut(s)	436
BspT107I	GGYRCC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	19
BssECI	CCNNGG	1 cut(s)	121
Bst2UI	CCWGG	2 cut(s)	123, 317
BstC8I	GCNNGC	1 cut(s)	115
BstFNI	CGCG	1 cut(s)	465
BstH2I	RGCGCY	2 cut(s)	226, 507
BstHHI	GCGC	2 cut(s)	225, 506
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 501
BstNI	CCWGG	2 cut(s)	123, 317
BstNSI	RCATGY	1 cut(s)	442
BstSCI	CCNGG	2 cut(s)	121, 315
BstSLI	GKGCMC	1 cut(s)	82
BstUI	CGCG	1 cut(s)	465
BstV1I	GCAGC	1 cut(s)	344
BsuI	GTATCC	1 cut(s)	244
BsuRI	GGCC	2 cut(s)	433, 455
BtgZI	GCGATG	1 cut(s)	189
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	162
BtuMI	TCGCGA	1 cut(s)	465
BveI	ACCTGC	1 cut(s)	436
Cac8I	GCNNGC	1 cut(s)	115
CfoI	GCGC	2 cut(s)	225, 506
CviAII	CATG	1 cut(s)	439
CviJI	RGCY	7 cut(s)	70, 126, 208, 335, 359, 433, 455
CviKI_1	RGCY	7 cut(s)	70, 126, 208, 335, 359, 433, 455
Eco147I	AGGCCT	1 cut(s)	433
Eco47III	AGCGCT	1 cut(s)	505
EcoRII	CCWGG	2 cut(s)	121, 315
FaeI	CATG	1 cut(s)	442
FaiI	YATR	3 cut(s)	74, 129, 440
FalI	AAGNNNNNCTT	4 cut(s)	227, 259, 384, 416
FatI	CATG	1 cut(s)	438
Fnu4HI	GCNGC	2 cut(s)	333, 496
Fsp4HI	GCNGC	2 cut(s)	333, 496
FspBI	CTAG	2 cut(s)	110, 260
GlaI	GCGC	2 cut(s)	224, 505
GluI	GCNGC	2 cut(s)	333, 496
HaeII	RGCGCY	2 cut(s)	226, 507
HaeIII	GGCC	2 cut(s)	433, 455
HhaI	GCGC	2 cut(s)	225, 506
Hin1II	CATG	1 cut(s)	442
Hin6I	GCGC	2 cut(s)	223, 504
HinP1I	GCGC	2 cut(s)	223, 504
HinfI	GANTC	1 cut(s)	479
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188I	TCNGA	3 cut(s)	52, 158, 287
Hpy188III	TCNNGA	1 cut(s)	464
Hpy8I	GTNNAC	1 cut(s)	80
HpyAV	CCTTC	3 cut(s)	284, 364, 432
HpyCH4V	TGCA	4 cut(s)	80, 162, 167, 445
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 501
Hsp92II	CATG	1 cut(s)	442
HspAI	GCGC	2 cut(s)	223, 504
LmnI	GCTCC	2 cut(s)	205, 492
LpnPI	CCDG	8 cut(s)	99, 108, 135, 150, 201, 302, 329, 431
Lsp1109I	GCAGC	1 cut(s)	344
LweI	GCATC	3 cut(s)	149, 395, 462
MaeI	CTAG	2 cut(s)	110, 260
MaeIII	GTNAC	3 cut(s)	211, 344, 394
MboII	GAAGA	1 cut(s)	374
MhlI	GDGCHC	1 cut(s)	82
MnlI	CCTC	2 cut(s)	232, 423
MslI	CAYNNNNRTG	2 cut(s)	96, 403
MspR9I	CCNGG	2 cut(s)	123, 317
MvaI	CCWGG	2 cut(s)	123, 317
MvnI	CGCG	1 cut(s)	465
MwoI	GCNNNNNNNGC	2 cut(s)	123, 501
NlaIII	CATG	1 cut(s)	442
NlaIV	GGNNCC	1 cut(s)	118
NmuCI	GTSAC	2 cut(s)	211, 344
NruI	TCGCGA	1 cut(s)	465
NspI	RCATGY	1 cut(s)	442
OliI	CACNNNNGTG	1 cut(s)	96
PaqCI	CACCTGC	1 cut(s)	436
PceI	AGGCCT	1 cut(s)	433
PciI	ACATGT	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	479
PflMI	CCANNNNNTGG	1 cut(s)	322
PkrI	GCNGC	2 cut(s)	334, 497
PscI	ACATGT	1 cut(s)	438
Psp6I	CCWGG	2 cut(s)	121, 315
PspGI	CCWGG	2 cut(s)	121, 315
PspN4I	GGNNCC	1 cut(s)	118
RruI	TCGCGA	1 cut(s)	465
RseI	CAYNNNNRTG	2 cut(s)	96, 403
SatI	GCNGC	2 cut(s)	333, 496
ScrFI	CCNGG	2 cut(s)	123, 317
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	3 cut(s)	210, 386, 450
SfaNI	GCATC	3 cut(s)	149, 395, 462
SmiMI	CAYNNNNRTG	2 cut(s)	96, 403
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
SseBI	AGGCCT	1 cut(s)	433
SspMI	CTAG	2 cut(s)	110, 260
StuI	AGGCCT	1 cut(s)	433
StyD4I	CCNGG	2 cut(s)	121, 315
TaqI	TCGA	1 cut(s)	403
TfiI	GAWTC	1 cut(s)	479
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	2 cut(s)	211, 344
TseI	GCWGC	2 cut(s)	332, 495
Tsp45I	GTSAC	2 cut(s)	211, 344
TspDTI	ATGAA	4 cut(s)	17, 45, 174, 293
TspGWI	ACGGA	1 cut(s)	245
TspRI	CASTG	1 cut(s)	169
Van91I	CCANNNNNTGG	1 cut(s)	322
VneI	GTGCAC	1 cut(s)	78
XceI	RCATGY	1 cut(s)	442
XspI	CTAG	2 cut(s)	110, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.