Rmu_co8296441.1_g000001

Domain of unknown function (DUF4336)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8296441.1
OG0022347
Physical Location & Seq
Forward (+)
1 .. 772
772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8296441.1_g000001.1.cds

Sequence Viewer

Length: 443 bp
gatgggaaagaatggttctgcaaattttgtttctcggtccatcaaacctgttggaacctaaggctagctttgcacagatgtcacaaaagctgattgtttcacccattgtgaagactcttgtcttcagcaaagttccggaaaaggtcagggattggatcgatagaatatcacgggactggaggttcaggagaataatccctgctcattttgccgcaccagttaatgcaagcaggtctgacttcctagctgcatttgcctttctggatgatcttttggatgaacgttatgtgactcggccttcactctctcttcttttcacatccctaatgggaaaggcggctagttacttccctcccgatgacatgaagactttatcttctcttgatcagtttttggtctcagtaggagctgtgaaaaagaccgtctcaggtcggaaaagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4336

Protein Analysis

146

Amino Acids

16.62

Weight (kDa)

10.12

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022347)

Species Orthologous Gene IDs
malus_domestica MD09G1061300.v1.1
prunus_persica Prupe.3G258900_v2.0.a1
pyrus_communis pycom111g05180
rosa_multiflora Rmu_co8296441.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 221
AccIII TCCGGA 1 cut(s) 135
AciI CCGC 2 cut(s) 212, 337
AclI AACGTT 1 cut(s) 282
AclWI GGATC 1 cut(s) 163
AcsI RAATTY 1 cut(s) 23
AcuI CTGAAG 1 cut(s) 108
AloI GAACNNNNNNTCC 2 cut(s) 166, 198
AluBI AGCT 4 cut(s) 68, 90, 247, 409
AluI AGCT 4 cut(s) 68, 90, 247, 409
Alw26I GTCTC 2 cut(s) 402, 429
AlwI GGATC 1 cut(s) 163
Aor13HI TCCGGA 1 cut(s) 135
AoxI GGCC 1 cut(s) 295
ApeKI GCWGC 1 cut(s) 247
ApoI RAATTY 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 92
AsuNHI GCTAGC 1 cut(s) 64
AvaII GGWCC 1 cut(s) 37
AxyI CCTNAGG 1 cut(s) 59
BbsI GAAGAC 3 cut(s) 114, 118, 373
BbvI GCAGC 1 cut(s) 234
BccI CCATC 1 cut(s) 48
BclI TGATCA 1 cut(s) 384
BcoDI GTCTC 2 cut(s) 402, 429
BfaI CTAG 3 cut(s) 65, 244, 341
BfuAI ACCTGC 1 cut(s) 221
BisI GCNGC 3 cut(s) 212, 248, 338
BlsI GCNGC 3 cut(s) 213, 249, 339
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 56
BmtI GCTAGC 1 cut(s) 68
BoxI GACNNNNGTC 1 cut(s) 118
BpiI GAAGAC 3 cut(s) 114, 118, 373
BpmI CTGGAG 1 cut(s) 198
Bsa29I ATCGAT 1 cut(s) 158
BsaI GGTCTC 1 cut(s) 402
BsaWI WCCGGW 1 cut(s) 135
Bse1I ACTGG 2 cut(s) 181, 217
Bse21I CCTNAGG 1 cut(s) 59
BseAI TCCGGA 1 cut(s) 135
BseCI ATCGAT 1 cut(s) 158
BseGI GGATG 3 cut(s) 270, 282, 319
BseMII CTCAG 2 cut(s) 413, 440
BseNI ACTGG 2 cut(s) 181, 217
BseXI GCAGC 1 cut(s) 234
BshFI GGCC 1 cut(s) 297
BshVI ATCGAT 1 cut(s) 158
BsiSI CCGG 1 cut(s) 136
BslFI GGGAC 1 cut(s) 187
BsmAI GTCTC 2 cut(s) 402, 429
BsmBI CGTCTC 1 cut(s) 429
BsmFI GGGAC 1 cut(s) 187
BsnI GGCC 1 cut(s) 297
Bso31I GGTCTC 1 cut(s) 402
Bsp13I TCCGGA 1 cut(s) 135
Bsp143I GATC 3 cut(s) 155, 267, 384
BspACI CCGC 2 cut(s) 212, 337
BspANI GGCC 1 cut(s) 297
BspCNI CTCAG 2 cut(s) 412, 439
BspDI ATCGAT 1 cut(s) 158
BspEI TCCGGA 1 cut(s) 135
BspLI GGNNCC 1 cut(s) 56
BspMI ACCTGC 1 cut(s) 221
BspOI GCTAGC 1 cut(s) 68
BspPI GGATC 1 cut(s) 163
BspTNI GGTCTC 1 cut(s) 402
BsrI ACTGG 2 cut(s) 181, 217
BssMI GATC 3 cut(s) 155, 267, 384
Bst4CI ACNGT 1 cut(s) 423
Bst6I CTCTTC 1 cut(s) 314
BstC8I GCNNGC 2 cut(s) 66, 228
BstDEI CTNAG 3 cut(s) 59, 399, 426
BstF5I GGATG 3 cut(s) 270, 282, 319
BstKTI GATC 3 cut(s) 158, 270, 387
BstMAI GTCTC 2 cut(s) 402, 429
BstMBI GATC 3 cut(s) 155, 267, 384
BstMWI GCNNNNNNNGC 3 cut(s) 70, 208, 253
BstPAI GACNNNNGTC 1 cut(s) 118
BstV1I GCAGC 1 cut(s) 234
BstV2I GAAGAC 3 cut(s) 114, 118, 373
Bsu15I ATCGAT 1 cut(s) 158
Bsu36I CCTNAGG 1 cut(s) 59
BsuRI GGCC 1 cut(s) 297
BsuTUI ATCGAT 1 cut(s) 158
BtsCI GGATG 3 cut(s) 270, 282, 319
BveI ACCTGC 1 cut(s) 221
Cac8I GCNNGC 2 cut(s) 66, 228
Cfr13I GGNCC 1 cut(s) 37
ClaI ATCGAT 1 cut(s) 158
CviAII CATG 1 cut(s) 363
CviJI RGCY 7 cut(s) 64, 68, 90, 247, 297, 340, 409
CviKI_1 RGCY 7 cut(s) 64, 68, 90, 247, 297, 340, 409
DdeI CTNAG 3 cut(s) 59, 399, 426
DpnI GATC 3 cut(s) 157, 269, 386
DpnII GATC 3 cut(s) 155, 267, 384
Eam1104I CTCTTC 1 cut(s) 314
EarI CTCTTC 1 cut(s) 314
Eco31I GGTCTC 1 cut(s) 402
Eco47I GGWCC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 108
Eco81I CCTNAGG 1 cut(s) 59
Esp3I CGTCTC 1 cut(s) 429
FaeI CATG 1 cut(s) 366
FaiI YATR 2 cut(s) 287, 364
FalI AAGNNNNNCTT 2 cut(s) 52, 84
FaqI GGGAC 1 cut(s) 187
FatI CATG 1 cut(s) 362
FbaI TGATCA 1 cut(s) 384
Fnu4HI GCNGC 3 cut(s) 212, 248, 338
FokI GGATG 3 cut(s) 277, 289, 306
Fsp4HI GCNGC 3 cut(s) 212, 248, 338
FspBI CTAG 3 cut(s) 65, 244, 341
GluI GCNGC 3 cut(s) 212, 248, 338
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 1 cut(s) 297
HapII CCGG 1 cut(s) 136
Hin1II CATG 1 cut(s) 366
HinfI GANTC 2 cut(s) 114, 291
HpaII CCGG 1 cut(s) 136
HphI GGTGA 1 cut(s) 92
Hpy188I TCNGA 2 cut(s) 237, 434
Hpy188III TCNNGA 5 cut(s) 136, 186, 262, 355, 382
HpyAV CCTTC 1 cut(s) 308
HpyCH4III ACNGT 1 cut(s) 423
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 4 cut(s) 21, 73, 226, 250
HpyF10VI GCNNNNNNNGC 3 cut(s) 70, 208, 253
HpyF3I CTNAG 3 cut(s) 59, 399, 426
HpySE526I ACGT 1 cut(s) 282
Hsp92II CATG 1 cut(s) 366
Kpn2I TCCGGA 1 cut(s) 135
Ksp22I TGATCA 1 cut(s) 384
Kzo9I GATC 3 cut(s) 155, 267, 384
LmnI GCTCC 1 cut(s) 406
Lsp1109I GCAGC 1 cut(s) 234
MaeI CTAG 3 cut(s) 65, 244, 341
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 3 cut(s) 80, 288, 343
MalI GATC 3 cut(s) 157, 269, 386
MboI GATC 3 cut(s) 155, 267, 384
MboII GAAGA 5 cut(s) 114, 123, 301, 368, 378
MluCI AATT 1 cut(s) 23
MlyI GAGTC 2 cut(s) 108, 285
MmeI TCCRAC 2 cut(s) 32, 412
MnlI CCTC 2 cut(s) 173, 362
MroI TCCGGA 1 cut(s) 135
MseI TTAA 1 cut(s) 221
MspI CCGG 1 cut(s) 136
MwoI GCNNNNNNNGC 3 cut(s) 70, 208, 253
NdeII GATC 3 cut(s) 155, 267, 384
NheI GCTAGC 1 cut(s) 64
NlaIII CATG 1 cut(s) 366
NlaIV GGNNCC 1 cut(s) 56
NmeAIII GCCGAG 1 cut(s) 273
NmuCI GTSAC 2 cut(s) 80, 288
PkrI GCNGC 3 cut(s) 213, 249, 339
PleI GAGTC 2 cut(s) 108, 285
PpsI GAGTC 2 cut(s) 108, 285
PshAI GACNNNNGTC 1 cut(s) 118
Psp1406I AACGTT 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 1 cut(s) 37
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 3 cut(s) 212, 248, 338
Sau3AI GATC 3 cut(s) 155, 267, 384
Sau96I GGNCC 1 cut(s) 37
SchI GAGTC 2 cut(s) 108, 285
SinI GGWCC 1 cut(s) 37
Sse9I AATT 1 cut(s) 23
SsiI CCGC 2 cut(s) 212, 337
SspMI CTAG 3 cut(s) 65, 244, 341
TaaI ACNGT 1 cut(s) 423
TaiI ACGT 1 cut(s) 285
TaqI TCGA 1 cut(s) 158
TaqII GACCGA 1 cut(s) 25
TasI AATT 1 cut(s) 23
TauI GCSGC 2 cut(s) 214, 340
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TseFI GTSAC 2 cut(s) 80, 288
TseI GCWGC 1 cut(s) 247
Tsp45I GTSAC 2 cut(s) 80, 288
TspDTI ATGAA 2 cut(s) 293, 379
VpaK11BI GGWCC 1 cut(s) 37
XapI RAATTY 1 cut(s) 23
XspI CTAG 3 cut(s) 65, 244, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.