Rmu_co8302471.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8302471.1
OG0025494
Physical Location & Seq
Forward (+)
1 .. 595
595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8302471.1_g000001.1.cds

Sequence Viewer

Length: 461 bp
ctgaggttgacgagtccgggctgcagagggacgaggctgaggtcgacgggtccaggctgcagagggaccaaatggatgagattgagtcgatctttgggtgggtgcccaaagtaaatcgcaaatcgctgggtctggtgaaacgaaggcgatctggtctaggcggagaacgagaactgatgttagcgattgggattgaggagctcgacgacggagcagagcaaatagcagtcgatattgggtggccggacgggaactgggttgagtctgggtacgaagcagattggcgacaaactgaagagattgatctcttctctggtgtcggaggcagacaaaggcagctggataacgaggcagacgaagccaatcgaactgactgtgagatgatgaagttgaccgaggaaaaagatgatgacgtctgccaacagtggagaacgacgtcgtctaacccaaatgggttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.25

Weight (kDa)

4.25

Isoelectric Point (pI)

47.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025494)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8302471.1_g000001 Rmu_sc0000830.1_g000053
rosa_samantha Rh2DG426300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 416, 439
AccB1I GGYRCC 1 cut(s) 102
AccI GTMKAC 1 cut(s) 44
AciI CCGC 1 cut(s) 161
AcoI YGGCCR 1 cut(s) 241
AcuI CTGAAG 1 cut(s) 314
AcyI GRCGYC 2 cut(s) 413, 436
AfaI GTAC 1 cut(s) 271
AjnI CCWGG 1 cut(s) 52
AluBI AGCT 2 cut(s) 201, 339
AluI AGCT 2 cut(s) 201, 339
Alw21I GWGCWC 1 cut(s) 203
AoxI GGCC 1 cut(s) 241
ApeKI GCWGC 3 cut(s) 21, 57, 336
AspS9I GGNCC 2 cut(s) 50, 66
AsuC2I CCSGG 1 cut(s) 18
AsuHPI GGTGA 1 cut(s) 147
AvaII GGWCC 2 cut(s) 50, 66
BaeGI GKGCMC 1 cut(s) 107
BanI GGYRCC 1 cut(s) 102
BanII GRGCYC 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 203
BbvCI CCTCAGC 1 cut(s) 38
BbvI GCAGC 3 cut(s) 8, 44, 348
BciT130I CCWGG 1 cut(s) 54
BcnI CCSGG 1 cut(s) 18
BfaI CTAG 1 cut(s) 157
BfmI CTRYAG 2 cut(s) 22, 58
BisI GCNGC 3 cut(s) 22, 58, 337
BlsI GCNGC 3 cut(s) 23, 59, 338
Bme1390I CCNGG 2 cut(s) 18, 54
Bme18I GGWCC 2 cut(s) 50, 66
BmgT120I GGNCC 2 cut(s) 50, 66
BmiI GGNNCC 3 cut(s) 51, 67, 104
BmrFI CCNGG 2 cut(s) 18, 54
BmrI ACTGGG 1 cut(s) 264
BmuI ACTGGG 1 cut(s) 264
Bpu10I CCTNAGC 1 cut(s) 38
BpuMI CCSGG 1 cut(s) 18
BsaHI GRCGYC 2 cut(s) 413, 436
BsaJI CCNNGG 1 cut(s) 395
Bse1I ACTGG 1 cut(s) 259
BseBI CCWGG 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 395
BseGI GGATG 1 cut(s) 81
BseMII CTCAG 1 cut(s) 29
BseNI ACTGG 1 cut(s) 259
BseRI GAGGAG 1 cut(s) 211
BseSI GKGCMC 1 cut(s) 107
BseXI GCAGC 3 cut(s) 8, 44, 348
BseYI CCCAGC 1 cut(s) 126
BshFI GGCC 1 cut(s) 243
BshNI GGYRCC 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 203
BsiSI CCGG 2 cut(s) 17, 244
BslFI GGGAC 2 cut(s) 43, 79
BsmFI GGGAC 2 cut(s) 43, 79
BsnI GGCC 1 cut(s) 243
Bsp1286I GDGCHC 2 cut(s) 107, 203
Bsp143I GATC 3 cut(s) 89, 148, 303
BspACI CCGC 1 cut(s) 161
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 1 cut(s) 30
BspLI GGNNCC 3 cut(s) 51, 67, 104
BspMAI CTGCAG 2 cut(s) 26, 62
BspT107I GGYRCC 1 cut(s) 102
BsrI ACTGG 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 395
BssMI GATC 3 cut(s) 89, 148, 303
BssNI GRCGYC 2 cut(s) 413, 436
Bst2UI CCWGG 1 cut(s) 54
Bst4CI ACNGT 2 cut(s) 376, 425
Bst6I CTCTTC 2 cut(s) 290, 313
BstACI GRCGYC 2 cut(s) 413, 436
BstDEI CTNAG 2 cut(s) 2, 38
BstF5I GGATG 1 cut(s) 81
BstKTI GATC 3 cut(s) 92, 151, 306
BstMBI GATC 3 cut(s) 89, 148, 303
BstMWI GCNNNNNNNGC 1 cut(s) 358
BstNI CCWGG 1 cut(s) 54
BstSCI CCNGG 2 cut(s) 16, 52
BstSFI CTRYAG 2 cut(s) 22, 58
BstSLI GKGCMC 1 cut(s) 107
BstV1I GCAGC 3 cut(s) 8, 44, 348
BsuRI GGCC 1 cut(s) 243
BtsCI GGATG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 430
Cfr13I GGNCC 2 cut(s) 50, 66
Csp6I GTAC 1 cut(s) 270
CviJI RGCY 7 cut(s) 21, 37, 57, 201, 243, 339, 361
CviKI_1 RGCY 7 cut(s) 21, 37, 57, 201, 243, 339, 361
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 2 cut(s) 2, 38
DpnI GATC 3 cut(s) 91, 150, 305
DpnII GATC 3 cut(s) 89, 148, 303
EaeI YGGCCR 1 cut(s) 241
Eam1104I CTCTTC 2 cut(s) 290, 313
EarI CTCTTC 2 cut(s) 290, 313
EciI GGCGGA 1 cut(s) 176
Ecl136II GAGCTC 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 203
Eco47I GGWCC 2 cut(s) 50, 66
Eco53kI GAGCTC 1 cut(s) 201
Eco57I CTGAAG 1 cut(s) 314
EcoICRI GAGCTC 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 52
EcoT38I GRGCYC 1 cut(s) 203
FaqI GGGAC 2 cut(s) 43, 79
FblI GTMKAC 1 cut(s) 44
Fnu4HI GCNGC 3 cut(s) 22, 58, 337
FokI GGATG 1 cut(s) 88
FriOI GRGCYC 1 cut(s) 203
Fsp4HI GCNGC 3 cut(s) 22, 58, 337
FspBI CTAG 1 cut(s) 157
GluI GCNGC 3 cut(s) 22, 58, 337
GsaI CCCAGC 1 cut(s) 130
HaeIII GGCC 1 cut(s) 243
HapII CCGG 2 cut(s) 17, 244
Hin1I GRCGYC 2 cut(s) 413, 436
HincII GTYRAC 3 cut(s) 9, 45, 392
HindII GTYRAC 3 cut(s) 9, 45, 392
HinfI GANTC 3 cut(s) 13, 85, 262
HpaII CCGG 2 cut(s) 17, 244
HphI GGTGA 1 cut(s) 147
Hpy166II GTNNAC 3 cut(s) 9, 45, 392
Hpy188I TCNGA 1 cut(s) 322
Hpy8I GTNNAC 3 cut(s) 9, 45, 392
Hpy99I CGWCG 5 cut(s) 49, 208, 211, 438, 441
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 2 cut(s) 376, 425
HpyCH4IV ACGT 2 cut(s) 413, 436
HpyCH4V TGCA 2 cut(s) 24, 60
HpyF10VI GCNNNNNNNGC 1 cut(s) 358
HpyF3I CTNAG 2 cut(s) 2, 38
HpySE526I ACGT 2 cut(s) 413, 436
Hsp92I GRCGYC 2 cut(s) 413, 436
Kzo9I GATC 3 cut(s) 89, 148, 303
LmnI GCTCC 2 cut(s) 198, 211
Lsp1109I GCAGC 3 cut(s) 8, 44, 348
MaeI CTAG 1 cut(s) 157
MaeII ACGT 2 cut(s) 413, 436
MalI GATC 3 cut(s) 91, 150, 305
MboI GATC 3 cut(s) 89, 148, 303
MboII GAAGA 2 cut(s) 300, 307
MhlI GDGCHC 2 cut(s) 107, 203
MlyI GAGTC 3 cut(s) 22, 94, 271
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 8 cut(s) 20, 27, 33, 56, 189, 316, 342, 390
MspA1I CMGCKG 1 cut(s) 339
MspI CCGG 2 cut(s) 17, 244
MspR9I CCNGG 2 cut(s) 18, 54
MvaI CCWGG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 358
NciI CCSGG 1 cut(s) 18
NdeII GATC 3 cut(s) 89, 148, 303
NlaIV GGNNCC 3 cut(s) 51, 67, 104
PcsI WCGNNNNNNNCGW 1 cut(s) 353
PflFI GACNNNGTC 1 cut(s) 438
PkrI GCNGC 3 cut(s) 23, 59, 338
PleI GAGTC 3 cut(s) 21, 93, 270
PpsI GAGTC 3 cut(s) 21, 93, 270
Psp124BI GAGCTC 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 52
PspFI CCCAGC 1 cut(s) 126
PspGI CCWGG 1 cut(s) 52
PspN4I GGNNCC 3 cut(s) 51, 67, 104
PspPI GGNCC 2 cut(s) 50, 66
PstI CTGCAG 2 cut(s) 26, 62
PsyI GACNNNGTC 1 cut(s) 438
PvuII CAGCTG 1 cut(s) 339
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
SacI GAGCTC 1 cut(s) 203
SalI GTCGAC 1 cut(s) 43
SatI GCNGC 3 cut(s) 22, 58, 337
Sau3AI GATC 3 cut(s) 89, 148, 303
Sau96I GGNCC 2 cut(s) 50, 66
SchI GAGTC 3 cut(s) 22, 94, 271
ScrFI CCNGG 2 cut(s) 18, 54
SduI GDGCHC 2 cut(s) 107, 203
SetI ASST 6 cut(s) 8, 44, 203, 341, 416, 439
SfcI CTRYAG 2 cut(s) 22, 58
SinI GGWCC 2 cut(s) 50, 66
SsiI CCGC 1 cut(s) 161
SspMI CTAG 1 cut(s) 157
SstI GAGCTC 1 cut(s) 203
StyD4I CCNGG 2 cut(s) 16, 52
TaaI ACNGT 2 cut(s) 376, 425
TaiI ACGT 2 cut(s) 416, 439
TaqI TCGA 5 cut(s) 44, 88, 203, 230, 366
TaqII GACCGA 1 cut(s) 409
TscAI CASTG 1 cut(s) 430
TseI GCWGC 3 cut(s) 21, 57, 336
TspDTI ATGAA 1 cut(s) 400
TspGWI ACGGA 1 cut(s) 224
TspRI CASTG 1 cut(s) 430
Tth111I GACNNNGTC 1 cut(s) 438
VpaK11BI GGWCC 2 cut(s) 50, 66
XmiI GTMKAC 1 cut(s) 44
XspI CTAG 1 cut(s) 157
ZraI GACGTC 2 cut(s) 414, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.