Rh2DG426300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0025494
Physical Location & Seq
Forward (+)
61756495 .. 61756764
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG426300.1

Sequence Viewer

Length: 270 bp
ATGGAGAACGAGGCTGAGGTCGACGGGTCCGGGCTGCAGAGGGACCAAATGGATGAGATTCAGTCGATCTTTGGGTGGGTGCCCAAAGTAAATCACAAATCGCTGGGTCTGGTGAAACGAAGGCGATCTGGTCTGGGAAGAGGACGAGAACTGATGTCAGCGACTGGGATTGAGGAGCTCGATGACGGAGCAGAGCAAATAGCAGTCGATCGTGGGTCGGGTCTAAATCAACTAAGATTGGAGCGGCTTGGTTGGATGACGTTGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.91

Weight (kDa)

5.11

Isoelectric Point (pI)

60.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0025494)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8302471.1_g000001 Rmu_sc0000830.1_g000053
rosa_samantha Rh2DG426300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 79
AccBSI CCGCTC 1 cut(s) 244
AccI GTMKAC 1 cut(s) 21
AciI CCGC 1 cut(s) 244
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
Alw21I GWGCWC 1 cut(s) 180
AlwNI CAGNNNCTG 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 34
AspS9I GGNCC 2 cut(s) 27, 43
AsuC2I CCSGG 1 cut(s) 31
AsuHPI GGTGA 1 cut(s) 124
AvaII GGWCC 2 cut(s) 27, 43
BaeGI GKGCMC 1 cut(s) 84
BanI GGYRCC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 180
BbvCI CCTCAGC 1 cut(s) 15
BbvI GCAGC 1 cut(s) 21
BcnI CCSGG 1 cut(s) 31
BfmI CTRYAG 1 cut(s) 35
BisI GCNGC 2 cut(s) 35, 245
BlsI GCNGC 2 cut(s) 36, 246
Bme1390I CCNGG 1 cut(s) 31
Bme18I GGWCC 2 cut(s) 27, 43
BmgT120I GGNCC 2 cut(s) 27, 43
BmiI GGNNCC 3 cut(s) 28, 44, 81
BmrFI CCNGG 1 cut(s) 31
BmrI ACTGGG 1 cut(s) 174
BmuI ACTGGG 1 cut(s) 174
Bpu10I CCTNAGC 1 cut(s) 15
BpuMI CCSGG 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 169
BseGI GGATG 2 cut(s) 58, 261
BseMII CTCAG 1 cut(s) 6
BseNI ACTGG 1 cut(s) 169
BseRI GAGGAG 1 cut(s) 188
BseSI GKGCMC 1 cut(s) 84
BseXI GCAGC 1 cut(s) 21
BseYI CCCAGC 1 cut(s) 103
Bsh1285I CGRYCG 1 cut(s) 211
BshNI GGYRCC 1 cut(s) 79
BsiEI CGRYCG 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 180
BsiSI CCGG 1 cut(s) 30
BslFI GGGAC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 56
Bsp1286I GDGCHC 2 cut(s) 84, 180
Bsp143I GATC 3 cut(s) 66, 125, 208
BspACI CCGC 1 cut(s) 244
BspCNI CTCAG 1 cut(s) 7
BspLI GGNNCC 3 cut(s) 28, 44, 81
BspMAI CTGCAG 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 79
BsrBI CCGCTC 1 cut(s) 244
BsrI ACTGG 1 cut(s) 169
BssMI GATC 3 cut(s) 66, 125, 208
Bst6I CTCTTC 1 cut(s) 133
BstDEI CTNAG 2 cut(s) 15, 233
BstF5I GGATG 2 cut(s) 58, 261
BstKTI GATC 3 cut(s) 69, 128, 211
BstMBI GATC 3 cut(s) 66, 125, 208
BstMCI CGRYCG 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 29
BstSFI CTRYAG 1 cut(s) 35
BstSLI GKGCMC 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 21
BtsCI GGATG 2 cut(s) 58, 261
CaiI CAGNNNCTG 1 cut(s) 164
Cfr13I GGNCC 2 cut(s) 27, 43
CviJI RGCY 4 cut(s) 14, 34, 178, 247
CviKI_1 RGCY 4 cut(s) 14, 34, 178, 247
DdeI CTNAG 2 cut(s) 15, 233
DpnI GATC 3 cut(s) 68, 127, 210
DpnII GATC 3 cut(s) 66, 125, 208
Eam1104I CTCTTC 1 cut(s) 133
EarI CTCTTC 1 cut(s) 133
Ecl136II GAGCTC 1 cut(s) 178
Eco24I GRGCYC 1 cut(s) 180
Eco47I GGWCC 2 cut(s) 27, 43
Eco53kI GAGCTC 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 180
FaqI GGGAC 1 cut(s) 56
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 2 cut(s) 35, 245
FokI GGATG 1 cut(s) 65
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 2 cut(s) 35, 245
GluI GCNGC 2 cut(s) 35, 245
GsaI CCCAGC 1 cut(s) 107
HapII CCGG 1 cut(s) 30
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 1 cut(s) 58
HpaII CCGG 1 cut(s) 30
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 1 cut(s) 22
Hpy8I GTNNAC 1 cut(s) 22
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 114
HpyCH4IV ACGT 1 cut(s) 260
HpyCH4V TGCA 1 cut(s) 37
HpyF3I CTNAG 2 cut(s) 15, 233
HpySE526I ACGT 1 cut(s) 260
Kzo9I GATC 3 cut(s) 66, 125, 208
LmnI GCTCC 3 cut(s) 175, 188, 241
LpnPI CCDG 6 cut(s) 43, 89, 95, 114, 119, 150
Lsp1109I GCAGC 1 cut(s) 21
MaeII ACGT 1 cut(s) 260
MalI GATC 3 cut(s) 68, 127, 210
MbiI CCGCTC 1 cut(s) 244
MboI GATC 3 cut(s) 66, 125, 208
MboII GAAGA 1 cut(s) 150
MhlI GDGCHC 2 cut(s) 84, 180
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 5 cut(s) 4, 10, 33, 134, 166
MspI CCGG 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 31
NciI CCSGG 1 cut(s) 31
NdeII GATC 3 cut(s) 66, 125, 208
NlaIV GGNNCC 3 cut(s) 28, 44, 81
PfeI GAWTC 1 cut(s) 58
PkrI GCNGC 2 cut(s) 36, 246
Ple19I CGATCG 1 cut(s) 211
Psp124BI GAGCTC 1 cut(s) 180
PspFI CCCAGC 1 cut(s) 103
PspN4I GGNNCC 3 cut(s) 28, 44, 81
PspPI GGNCC 2 cut(s) 27, 43
PstI CTGCAG 1 cut(s) 39
PstNI CAGNNNCTG 1 cut(s) 164
PvuI CGATCG 1 cut(s) 211
SacI GAGCTC 1 cut(s) 180
SalI GTCGAC 1 cut(s) 20
SatI GCNGC 2 cut(s) 35, 245
Sau3AI GATC 3 cut(s) 66, 125, 208
Sau96I GGNCC 2 cut(s) 27, 43
ScrFI CCNGG 1 cut(s) 31
SduI GDGCHC 2 cut(s) 84, 180
SetI ASST 3 cut(s) 21, 180, 263
SfcI CTRYAG 1 cut(s) 35
SinI GGWCC 2 cut(s) 27, 43
SsiI CCGC 1 cut(s) 244
SstI GAGCTC 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 29
TaiI ACGT 1 cut(s) 263
TaqI TCGA 4 cut(s) 21, 65, 180, 207
TauI GCSGC 1 cut(s) 247
TfiI GAWTC 1 cut(s) 58
TseI GCWGC 1 cut(s) 34
TspGWI ACGGA 1 cut(s) 201
VpaK11BI GGWCC 2 cut(s) 27, 43
XmiI GTMKAC 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.