Rmu_co8312737.1_g000001

COBRA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8312737.1
OG0021075
Physical Location & Seq
Reverse (-)
409 .. 873
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8312737.1_g000001.1.cds

Sequence Viewer

Length: 465 bp
atgtaccggcaaatcacaagcccgggatggagcataggatggacatgggcaaagaaggaagtgatctggtccatggtgggagctaaagtgaccgatcaaggggactgttcgaaattcaaagggaacaccccactttgttgtgagaaaactccaacagttattgacttgcttcccggagctccttacaaccaacagttcaccaattgctgcaagggtggtgttttgacatcattgggacaagacccttctactgcagtcgcagcatttcagatcagtgttggctttgcaggcacttcaaataaaacagtaaagcctccaaagaaattctttttgcttggtcctggaccaggctatacttgtagtgccgcgaacattgtgccatcctcggttttcttgtcacctgatggccgaagtaaaactcgagcaatgagtaagcttgctactagttctaccttccctgtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COBRA

Protein Analysis

154

Amino Acids

16.35

Weight (kDa)

9.46

Isoelectric Point (pI)

30.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021075)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13532
rosa_multiflora Rmu_co8312737.1_g000001 Rmu_sc0000951.1_g000004 Rmu_sc0000951.1_g000007 Rmu_sc0016134.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 368
AciI CCGC 1 cut(s) 366
AcoI YGGCCR 1 cut(s) 406
AcsI RAATTY 2 cut(s) 113, 323
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 99, 347
AgsI TTSAA 2 cut(s) 118, 297
AhlI ACTAGT 1 cut(s) 443
AjnI CCWGG 2 cut(s) 340, 346
AluBI AGCT 3 cut(s) 83, 179, 436
AluI AGCT 3 cut(s) 83, 179, 436
Alw21I GWGCWC 1 cut(s) 181
Ama87I CYCGRG 2 cut(s) 22, 420
AoxI GGCC 1 cut(s) 406
ApeKI GCWGC 2 cut(s) 207, 260
ApoI RAATTY 2 cut(s) 113, 323
AspS9I GGNCC 3 cut(s) 69, 338, 344
AsuC2I CCSGG 3 cut(s) 23, 24, 174
AsuHPI GGTGA 2 cut(s) 190, 390
AsuII TTCGAA 1 cut(s) 110
AvaI CYCGRG 2 cut(s) 22, 420
AvaII GGWCC 3 cut(s) 69, 338, 344
BanII GRGCYC 1 cut(s) 181
Bbv12I GWGCWC 1 cut(s) 181
BbvI GCAGC 2 cut(s) 194, 272
BccI CCATC 4 cut(s) 21, 33, 388, 398
BcgI CGANNNNNNTGC 2 cut(s) 358, 392
BciT130I CCWGG 2 cut(s) 342, 348
BcnI CCSGG 3 cut(s) 23, 24, 174
BcuI ACTAGT 1 cut(s) 443
BfaI CTAG 1 cut(s) 444
BfmI CTRYAG 1 cut(s) 252
BisI GCNGC 3 cut(s) 208, 261, 366
BlsI GCNGC 3 cut(s) 209, 262, 367
Bme1390I CCNGG 5 cut(s) 23, 24, 174, 342, 348
Bme18I GGWCC 3 cut(s) 69, 338, 344
BmeT110I CYCGRG 2 cut(s) 22, 420
BmgT120I GGNCC 3 cut(s) 69, 338, 344
BmrFI CCNGG 5 cut(s) 23, 24, 174, 342, 348
Bpu14I TTCGAA 1 cut(s) 110
BpuMI CCSGG 3 cut(s) 23, 24, 174
BsaJI CCNNGG 3 cut(s) 22, 72, 384
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 347
Bse118I RCCGGY 1 cut(s) 6
Bse3DI GCAATG 1 cut(s) 432
BseBI CCWGG 2 cut(s) 342, 348
BseDI CCNNGG 3 cut(s) 22, 72, 384
BseGI GGATG 3 cut(s) 32, 44, 380
BseLI CCNNNNNNNGG 2 cut(s) 99, 347
BseMI GCAATG 1 cut(s) 432
BseXI GCAGC 2 cut(s) 194, 272
Bsh1236I CGCG 1 cut(s) 368
BshFI GGCC 1 cut(s) 408
BsiHKAI GWGCWC 1 cut(s) 181
BsiHKCI CYCGRG 2 cut(s) 22, 420
BsiSI CCGG 3 cut(s) 7, 23, 174
BslFI GGGAC 2 cut(s) 116, 249
BslI CCNNNNNNNGG 2 cut(s) 99, 347
BsmFI GGGAC 2 cut(s) 116, 249
BsnI GGCC 1 cut(s) 408
BsoBI CYCGRG 2 cut(s) 22, 420
Bsp119I TTCGAA 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 181
Bsp143I GATC 3 cut(s) 63, 94, 270
Bsp19I CCATGG 1 cut(s) 72
BspACI CCGC 1 cut(s) 366
BspANI GGCC 1 cut(s) 408
BspFNI CGCG 1 cut(s) 368
BspMAI CTGCAG 1 cut(s) 256
BspT104I TTCGAA 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 432
BsrFI RCCGGY 1 cut(s) 6
BssAI RCCGGY 1 cut(s) 6
BssECI CCNNGG 3 cut(s) 22, 72, 384
BssMI GATC 3 cut(s) 63, 94, 270
BssT1I CCWWGG 1 cut(s) 72
Bst2UI CCWGG 2 cut(s) 342, 348
Bst4CI ACNGT 4 cut(s) 107, 157, 195, 307
BstBI TTCGAA 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 289, 438
BstDSI CCRYGG 1 cut(s) 72
BstENI CCTNNNNNAGG 1 cut(s) 345
BstF5I GGATG 3 cut(s) 32, 44, 380
BstFNI CGCG 1 cut(s) 368
BstKTI GATC 3 cut(s) 66, 97, 273
BstMBI GATC 3 cut(s) 63, 94, 270
BstMWI GCNNNNNNNGC 2 cut(s) 260, 288
BstNI CCWGG 2 cut(s) 342, 348
BstSCI CCNGG 5 cut(s) 21, 22, 172, 340, 346
BstSFI CTRYAG 1 cut(s) 252
BstUI CGCG 1 cut(s) 368
BstV1I GCAGC 2 cut(s) 194, 272
BsuRI GGCC 1 cut(s) 408
BtgI CCRYGG 1 cut(s) 72
BtsCI GGATG 3 cut(s) 32, 44, 380
BtsIMutI CAGTG 1 cut(s) 280
Cac8I GCNNGC 2 cut(s) 289, 438
Cfr10I RCCGGY 1 cut(s) 6
Cfr13I GGNCC 3 cut(s) 69, 338, 344
Cfr9I CCCGGG 1 cut(s) 22
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 45, 73
CviJI RGCY 8 cut(s) 21, 83, 179, 282, 313, 351, 408, 436
CviKI_1 RGCY 8 cut(s) 21, 83, 179, 282, 313, 351, 408, 436
CviQI GTAC 1 cut(s) 4
DpnI GATC 3 cut(s) 65, 96, 272
DpnII GATC 3 cut(s) 63, 94, 270
EaeI YGGCCR 1 cut(s) 406
Ecl136II GAGCTC 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 181
Eco47I GGWCC 3 cut(s) 69, 338, 344
Eco53kI GAGCTC 1 cut(s) 179
Eco88I CYCGRG 2 cut(s) 22, 420
EcoICRI GAGCTC 1 cut(s) 179
EcoNI CCTNNNNNAGG 1 cut(s) 345
EcoRII CCWGG 2 cut(s) 340, 346
EcoT14I CCWWGG 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 2 cut(s) 48, 76
FaiI YATR 4 cut(s) 35, 46, 74, 354
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FaqI GGGAC 2 cut(s) 116, 249
FatI CATG 2 cut(s) 44, 72
Fnu4HI GCNGC 3 cut(s) 208, 261, 366
FokI GGATG 3 cut(s) 39, 51, 367
FriOI GRGCYC 1 cut(s) 181
Fsp4HI GCNGC 3 cut(s) 208, 261, 366
FspBI CTAG 1 cut(s) 444
GluI GCNGC 3 cut(s) 208, 261, 366
HaeIII GGCC 1 cut(s) 408
HapII CCGG 3 cut(s) 7, 23, 174
Hin1II CATG 2 cut(s) 48, 76
HindIII AAGCTT 1 cut(s) 434
HpaII CCGG 3 cut(s) 7, 23, 174
HphI GGTGA 2 cut(s) 190, 390
Hpy166II GTNNAC 1 cut(s) 198
Hpy188I TCNGA 1 cut(s) 270
Hpy8I GTNNAC 1 cut(s) 198
HpyAV CCTTC 3 cut(s) 49, 255, 463
HpyCH4III ACNGT 4 cut(s) 107, 157, 195, 307
HpyCH4V TGCA 3 cut(s) 210, 254, 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 288
Hsp92II CATG 2 cut(s) 48, 76
Kzo9I GATC 3 cut(s) 63, 94, 270
LmnI GCTCC 4 cut(s) 30, 80, 176, 184
Lsp1109I GCAGC 2 cut(s) 194, 272
MaeI CTAG 1 cut(s) 444
MaeIII GTNAC 2 cut(s) 88, 396
MalI GATC 3 cut(s) 65, 96, 272
MboI GATC 3 cut(s) 63, 94, 270
MfeI CAATTG 1 cut(s) 202
MhlI GDGCHC 1 cut(s) 181
MluCI AATT 3 cut(s) 113, 202, 323
MmeI TCCRAC 1 cut(s) 176
MnlI CCTC 2 cut(s) 324, 394
MspI CCGG 3 cut(s) 7, 23, 174
MspR9I CCNGG 5 cut(s) 23, 24, 174, 342, 348
MunI CAATTG 1 cut(s) 202
MvaI CCWGG 2 cut(s) 342, 348
MvnI CGCG 1 cut(s) 368
MwoI GCNNNNNNNGC 2 cut(s) 260, 288
NciI CCSGG 3 cut(s) 23, 24, 174
NcoI CCATGG 1 cut(s) 72
NdeII GATC 3 cut(s) 63, 94, 270
NlaIII CATG 2 cut(s) 48, 76
NmuCI GTSAC 2 cut(s) 88, 396
NspV TTCGAA 1 cut(s) 110
PaeR7I CTCGAG 1 cut(s) 420
PfoI TCCNGGA 2 cut(s) 172, 340
PkrI GCNGC 3 cut(s) 209, 262, 367
Psp124BI GAGCTC 1 cut(s) 181
Psp6I CCWGG 2 cut(s) 340, 346
PspGI CCWGG 2 cut(s) 340, 346
PspPI GGNCC 3 cut(s) 69, 338, 344
PspXI VCTCGAGB 1 cut(s) 420
PstI CTGCAG 1 cut(s) 256
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SacI GAGCTC 1 cut(s) 181
SatI GCNGC 3 cut(s) 208, 261, 366
Sau3AI GATC 3 cut(s) 63, 94, 270
Sau96I GGNCC 3 cut(s) 69, 338, 344
ScrFI CCNGG 5 cut(s) 23, 24, 174, 342, 348
SduI GDGCHC 1 cut(s) 181
SetI ASST 5 cut(s) 85, 181, 403, 438, 455
SfcI CTRYAG 1 cut(s) 252
Sfr274I CTCGAG 1 cut(s) 420
SfuI TTCGAA 1 cut(s) 110
SinI GGWCC 3 cut(s) 69, 338, 344
SlaI CTCGAG 1 cut(s) 420
SmaI CCCGGG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 420
SmoI CTYRAG 1 cut(s) 420
SpeI ACTAGT 1 cut(s) 443
Sse9I AATT 3 cut(s) 113, 202, 323
SsiI CCGC 1 cut(s) 366
SspMI CTAG 1 cut(s) 444
SstI GAGCTC 1 cut(s) 181
StyD4I CCNGG 5 cut(s) 21, 22, 172, 340, 346
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 4 cut(s) 107, 157, 195, 307
TaqI TCGA 2 cut(s) 110, 421
TaqII GACCGA 1 cut(s) 107
TasI AATT 3 cut(s) 113, 202, 323
TauI GCSGC 1 cut(s) 368
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 2 cut(s) 88, 396
TseI GCWGC 2 cut(s) 207, 260
Tsp45I GTSAC 2 cut(s) 88, 396
TspMI CCCGGG 1 cut(s) 22
TspRI CASTG 1 cut(s) 280
VpaK11BI GGWCC 3 cut(s) 69, 338, 344
XagI CCTNNNNNAGG 1 cut(s) 345
XapI RAATTY 2 cut(s) 113, 323
XhoI CTCGAG 1 cut(s) 420
XmaI CCCGGG 1 cut(s) 22
XspI CTAG 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.