Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8315679.1

Orthogroup ID

OG0029390

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 796

Gene Structure 796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8315679.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ctgcgtttaacgagtgcaccaaggaagaggcatcctgctgatataaaaagtttttcccatgaactaaattccaaaggtgttcgacctttcccattttggaagcctcggggcttgaacaacgtggaggaaatattggttgtgattcgggctaaatttgataaagcaaaggaagaagtgaactccgatctagctgtatttgcagcagatttggttggcgttcttgaaaaaaatgcagatactcatccagactggcaggaaaccattgaggacttgctggttttagctcgaagttgtgcaatgacatcatctggagagttttggcttcagtgtgaaggcatagttcaggatttggatgatagacgtcaagaacttcctccgggtacacttaagcagcttcacacccgaatgcttttcatactcactagatgtaccaggttgttgcagttccataaggaaagtggattggctgaggacgtaccggttttccagcttcgtcaatcaagaatcctgaattccgtagataaaagacttaattctgcagataaaagaattcctccaagtttggtaaaggatacaaaaagttcaagtgttacaaagacatctaaagcagcttcagctaggaaatcttacagtcaggagcagcatagcttggattggaagagagatcatgcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

224

Amino Acids

25.51

Weight (kDa)

9.28

Isoelectric Point (pI)

53.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029390)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g27570
rosa_multiflora	Rmu_co8315679.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	364
AcsI	RAATTY	4 cut(s)	67, 152, 511, 549
AcuI	CTGAAG	2 cut(s)	308, 597
AcyI	GRCGYC	1 cut(s)	361
AfaI	GTAC	3 cut(s)	382, 430, 477
AflII	CTTAAG	1 cut(s)	386
AgeI	ACCGGT	1 cut(s)	478
AgsI	TTSAA	3 cut(s)	115, 224, 585
AjnI	CCWGG	1 cut(s)	431
AluBI	AGCT	7 cut(s)	191, 284, 394, 490, 611, 617, 648
AluI	AGCT	7 cut(s)	191, 284, 394, 490, 611, 617, 648
Alw21I	GWGCWC	1 cut(s)	19
Alw44I	GTGCAC	1 cut(s)	15
Ama87I	CYCGRG	1 cut(s)	105
ApaLI	GTGCAC	1 cut(s)	15
ApeKI	GCWGC	4 cut(s)	200, 391, 608, 640
ApoI	RAATTY	4 cut(s)	67, 152, 511, 549
AsiGI	ACCGGT	1 cut(s)	478
AsuC2I	CCSGG	1 cut(s)	378
AvaI	CYCGRG	1 cut(s)	105
BaeGI	GKGCMC	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	19
BbvCI	CCTCAGC	1 cut(s)	468
BbvI	GCAGC	4 cut(s)	212, 403, 620, 652
BciT130I	CCWGG	1 cut(s)	433
BciVI	GTATCC	1 cut(s)	565
BcnI	CCSGG	1 cut(s)	378
BfaI	CTAG	3 cut(s)	188, 423, 618
BfmI	CTRYAG	1 cut(s)	537
BfrI	CTTAAG	1 cut(s)	386
BfuI	GTATCC	1 cut(s)	565
BisI	GCNGC	4 cut(s)	201, 392, 609, 641
BlsI	GCNGC	4 cut(s)	202, 393, 610, 642
Bme1390I	CCNGG	2 cut(s)	378, 433
BmeT110I	CYCGRG	1 cut(s)	105
BmrFI	CCNGG	2 cut(s)	378, 433
BmsI	GCATC	1 cut(s)	40
BpmI	CTGGAG	1 cut(s)	330
Bpu10I	CCTNAGC	1 cut(s)	468
BpuMI	CCSGG	1 cut(s)	378
BsaBI	GATNNNNATC	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	361
BsaJI	CCNNGG	2 cut(s)	20, 104
BsaWI	WCCGGW	1 cut(s)	478
Bse118I	RCCGGY	1 cut(s)	478
Bse1I	ACTGG	1 cut(s)	254
Bse3DI	GCAATG	1 cut(s)	303
Bse8I	GATNNNNATC	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	433
BseDI	CCNNGG	2 cut(s)	20, 104
BseGI	GGATG	3 cut(s)	31, 241, 358
BseJI	GATNNNNATC	1 cut(s)	240
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	1 cut(s)	254
BseSI	GKGCMC	1 cut(s)	19
BseXI	GCAGC	4 cut(s)	212, 403, 620, 652
BshTI	ACCGGT	1 cut(s)	478
BsiHKAI	GWGCWC	1 cut(s)	19
BsiHKCI	CYCGRG	1 cut(s)	105
BsiSI	CCGG	2 cut(s)	377, 479
BsmI	GAATGC	1 cut(s)	411
BsoBI	CYCGRG	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	184, 664
BspCNI	CTCAG	1 cut(s)	460
BspMAI	CTGCAG	1 cut(s)	541
BspTI	CTTAAG	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	303
BsrFI	RCCGGY	1 cut(s)	478
BsrI	ACTGG	1 cut(s)	254
BssAI	RCCGGY	1 cut(s)	478
BssECI	CCNNGG	2 cut(s)	20, 104
BssMI	GATC	2 cut(s)	184, 664
BssNI	GRCGYC	1 cut(s)	361
BssT1I	CCWWGG	1 cut(s)	20
Bst2UI	CCWGG	1 cut(s)	433
Bst4CI	ACNGT	1 cut(s)	632
Bst6I	CTCTTC	2 cut(s)	20, 653
BstACI	GRCGYC	1 cut(s)	361
BstAFI	CTTAAG	1 cut(s)	386
BstDEI	CTNAG	1 cut(s)	468
BstF5I	GGATG	3 cut(s)	31, 241, 358
BstKTI	GATC	2 cut(s)	187, 667
BstMBI	GATC	2 cut(s)	184, 664
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 614
BstNI	CCWGG	1 cut(s)	433
BstSCI	CCNGG	2 cut(s)	376, 431
BstSFI	CTRYAG	1 cut(s)	537
BstSLI	GKGCMC	1 cut(s)	19
BstV1I	GCAGC	4 cut(s)	212, 403, 620, 652
BsuI	GTATCC	1 cut(s)	565
BtsCI	GGATG	3 cut(s)	31, 241, 358
BtsIMutI	CAGTG	1 cut(s)	332
Cfr10I	RCCGGY	1 cut(s)	478
CsiI	ACCWGGT	1 cut(s)	431
Csp6I	GTAC	3 cut(s)	381, 429, 476
CspAI	ACCGGT	1 cut(s)	478
CviAII	CATG	2 cut(s)	59, 668
CviQI	GTAC	3 cut(s)	381, 429, 476
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	2 cut(s)	186, 666
DpnII	GATC	2 cut(s)	184, 664
Eam1104I	CTCTTC	2 cut(s)	20, 653
EarI	CTCTTC	2 cut(s)	20, 653
Eco130I	CCWWGG	1 cut(s)	20
Eco57I	CTGAAG	2 cut(s)	308, 597
Eco88I	CYCGRG	1 cut(s)	105
EcoRI	GAATTC	2 cut(s)	511, 549
EcoRII	CCWGG	1 cut(s)	431
EcoT14I	CCWWGG	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	20
FaeI	CATG	2 cut(s)	62, 671
FaiI	YATR	7 cut(s)	44, 60, 338, 416, 450, 645, 669
FatI	CATG	2 cut(s)	58, 667
Fnu4HI	GCNGC	4 cut(s)	201, 392, 609, 641
FokI	GGATG	3 cut(s)	18, 228, 365
Fsp4HI	GCNGC	4 cut(s)	201, 392, 609, 641
FspBI	CTAG	3 cut(s)	188, 423, 618
GluI	GCNGC	4 cut(s)	201, 392, 609, 641
GsuI	CTGGAG	1 cut(s)	330
HapII	CCGG	2 cut(s)	377, 479
Hin1I	GRCGYC	1 cut(s)	361
Hin1II	CATG	2 cut(s)	62, 671
HinfI	GANTC	2 cut(s)	142, 504
HpaII	CCGG	2 cut(s)	377, 479
Hpy166II	GTNNAC	3 cut(s)	17, 178, 383
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	8 cut(s)	221, 245, 309, 344, 365, 501, 508, 635
Hpy8I	GTNNAC	3 cut(s)	17, 178, 383
HpyAV	CCTTC	1 cut(s)	326
HpyCH4III	ACNGT	1 cut(s)	632
HpyCH4IV	ACGT	3 cut(s)	120, 361, 474
HpyCH4V	TGCA	6 cut(s)	17, 200, 233, 296, 442, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 614
HpyF3I	CTNAG	1 cut(s)	468
HpySE526I	ACGT	3 cut(s)	120, 361, 474
Hsp92I	GRCGYC	1 cut(s)	361
Hsp92II	CATG	2 cut(s)	62, 671
Kzo9I	GATC	2 cut(s)	184, 664
LmnI	GCTCC	1 cut(s)	637
Lsp1109I	GCAGC	4 cut(s)	212, 403, 620, 652
LweI	GCATC	1 cut(s)	40
MabI	ACCWGGT	1 cut(s)	431
MaeI	CTAG	3 cut(s)	188, 423, 618
MaeII	ACGT	3 cut(s)	120, 361, 474
MaeIII	GTNAC	1 cut(s)	589
MalI	GATC	2 cut(s)	186, 666
MboI	GATC	2 cut(s)	184, 664
MboII	GAAGA	3 cut(s)	37, 182, 670
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	5 cut(s)	67, 152, 511, 532, 549
MnlI	CCTC	7 cut(s)	21, 114, 118, 259, 384, 463, 564
MseI	TTAA	3 cut(s)	8, 387, 531
MslI	CAYNNNNRTG	1 cut(s)	404
MspCI	CTTAAG	1 cut(s)	386
MspI	CCGG	2 cut(s)	377, 479
MspR9I	CCNGG	2 cut(s)	378, 433
Mva1269I	GAATGC	1 cut(s)	411
MvaI	CCWGG	1 cut(s)	433
MwoI	GCNNNNNNNGC	2 cut(s)	197, 614
NciI	CCSGG	1 cut(s)	378
NdeII	GATC	2 cut(s)	184, 664
NlaIII	CATG	2 cut(s)	62, 671
PctI	GAATGC	1 cut(s)	411
PfeI	GAWTC	2 cut(s)	142, 504
PinAI	ACCGGT	1 cut(s)	478
PkrI	GCNGC	4 cut(s)	202, 393, 610, 642
Psp6I	CCWGG	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	431
PstI	CTGCAG	1 cut(s)	541
RsaI	GTAC	3 cut(s)	382, 430, 477
RsaNI	GTAC	3 cut(s)	381, 429, 476
RseI	CAYNNNNRTG	1 cut(s)	404
SaqAI	TTAA	3 cut(s)	8, 387, 531
SatI	GCNGC	4 cut(s)	201, 392, 609, 641
Sau3AI	GATC	2 cut(s)	184, 664
ScrFI	CCNGG	2 cut(s)	378, 433
SduI	GDGCHC	1 cut(s)	19
SexAI	ACCWGGT	1 cut(s)	431
SfaNI	GCATC	1 cut(s)	40
SfcI	CTRYAG	1 cut(s)	537
SmiMI	CAYNNNNRTG	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	5 cut(s)	67, 152, 511, 532, 549
SspI	AATATT	1 cut(s)	132
SspMI	CTAG	3 cut(s)	188, 423, 618
StyD4I	CCNGG	2 cut(s)	376, 431
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	1 cut(s)	632
TaiI	ACGT	3 cut(s)	123, 364, 477
TaqI	TCGA	2 cut(s)	82, 286
TasI	AATT	5 cut(s)	67, 152, 511, 532, 549
TfiI	GAWTC	2 cut(s)	142, 504
Tru1I	TTAA	3 cut(s)	8, 387, 531
Tru9I	TTAA	3 cut(s)	8, 387, 531
TscAI	CASTG	1 cut(s)	332
TseI	GCWGC	4 cut(s)	200, 391, 608, 640
TspDTI	ATGAA	2 cut(s)	75, 403
TspGWI	ACGGA	1 cut(s)	505
TspRI	CASTG	1 cut(s)	332
Vha464I	CTTAAG	1 cut(s)	386
VneI	GTGCAC	1 cut(s)	15
XapI	RAATTY	4 cut(s)	67, 152, 511, 549
XcmI	CCANNNNNNNNNTGG	1 cut(s)	455
XspI	CTAG	3 cut(s)	188, 423, 618
ZraI	GACGTC	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.