Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8332515.1

Orthogroup ID

OG0031331

Physical Location & Seq

Genomic Coordinates Forward (+)

103 .. 938

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8332515.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atgatttctgccttgcaacatccaaaccttgtgaagctgtatggatgttgtgttgaaggaaaccagatgttgttaatttacgagtacatggagaataactgtgtatcacgtgctcttttcgcgagagaccctacttgcagattgaaattggactggcctactaggaagaacatttgcctaggtattgctagaggtttggcctatctacatgaagaatccagaataagaatagtgcatcgcgatatcaagacgagcaatgtgttgcttgataagaatttcaatgctaaaatctctgattttggcttggcaaagcttaatgaggatggcaacacccacattagcactcggattgctggaaccattggttatatggctcctgagtatgccatgcgtggctacttaactgcaaaagcagatgtttatagctttggagttgtggcactagaaattgttagcggaaagagcaatacaaactataggccaaaggaggaattcgtctaccttcttgattgggtaattacacactttgaattttgtttcattttcttccctcggttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

186

Amino Acids

21.38

Weight (kDa)

8.5

Isoelectric Point (pI)

19.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031331)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8332515.1_g000001 Rmu_sc0004990.1_g000023

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	498
AccII	CGCG	2 cut(s)	122, 240
AciI	CCGC	1 cut(s)	456
AcsI	RAATTY	3 cut(s)	274, 491, 530
AcvI	CACGTG	1 cut(s)	110
AfaI	GTAC	1 cut(s)	86
AgsI	TTSAA	4 cut(s)	56, 145, 280, 530
AluBI	AGCT	3 cut(s)	37, 313, 426
AluI	AGCT	3 cut(s)	37, 313, 426
Alw21I	GWGCWC	1 cut(s)	115
Alw26I	GTCTC	1 cut(s)	120
AoxI	GGCC	3 cut(s)	155, 198, 479
ApoI	RAATTY	3 cut(s)	274, 491, 530
AspA2I	CCTAGG	1 cut(s)	178
AvrII	CCTAGG	1 cut(s)	178
BbrPI	CACGTG	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	115
BccI	CCATC	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	4 cut(s)	162, 179, 189, 443
BfmI	CTRYAG	1 cut(s)	475
BlnI	CCTAGG	1 cut(s)	178
BmiI	GGNNCC	2 cut(s)	358, 375
BmsI	GCATC	1 cut(s)	244
BsaAI	YACGTR	1 cut(s)	110
BsaI	GGTCTC	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	178, 551
Bse1I	ACTGG	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	262
BseDI	CCNNGG	2 cut(s)	178, 551
BseGI	GGATG	3 cut(s)	19, 50, 328
BseMI	GCAATG	1 cut(s)	262
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	1 cut(s)	158
Bsh1236I	CGCG	2 cut(s)	122, 240
BshFI	GGCC	3 cut(s)	157, 200, 481
BsiHKAI	GWGCWC	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	120
BsnI	GGCC	3 cut(s)	157, 200, 481
Bso31I	GGTCTC	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp68I	TCGCGA	2 cut(s)	122, 240
BspACI	CCGC	1 cut(s)	456
BspANI	GGCC	3 cut(s)	157, 200, 481
BspCNI	CTCAG	1 cut(s)	370
BspFNI	CGCG	2 cut(s)	122, 240
BspLI	GGNNCC	2 cut(s)	358, 375
BspTNI	GGTCTC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	158
BssECI	CCNNGG	2 cut(s)	178, 551
BssT1I	CCWWGG	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	101
BstBAI	YACGTR	1 cut(s)	110
BstDEI	CTNAG	1 cut(s)	378
BstF5I	GGATG	3 cut(s)	19, 50, 328
BstFNI	CGCG	2 cut(s)	122, 240
BstMAI	GTCTC	1 cut(s)	120
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 462
BstSFI	CTRYAG	1 cut(s)	475
BstUI	CGCG	2 cut(s)	122, 240
BsuRI	GGCC	3 cut(s)	157, 200, 481
BtgZI	GCGATG	1 cut(s)	221
BtsCI	GGATG	3 cut(s)	19, 50, 328
BtuMI	TCGCGA	2 cut(s)	122, 240
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	3 cut(s)	88, 209, 388
CviJI	RGCY	9 cut(s)	37, 157, 200, 303, 313, 374, 396, 426, 481
CviKI_1	RGCY	9 cut(s)	37, 157, 200, 303, 313, 374, 396, 426, 481
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	1 cut(s)	378
Eco130I	CCWWGG	1 cut(s)	178
Eco31I	GGTCTC	1 cut(s)	120
Eco32I	GATATC	1 cut(s)	244
Eco72I	CACGTG	1 cut(s)	110
EcoRI	GAATTC	1 cut(s)	491
EcoRV	GATATC	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	178
FaeI	CATG	3 cut(s)	91, 212, 391
FaiI	YATR	9 cut(s)	42, 89, 210, 369, 371, 384, 389, 423, 477
FatI	CATG	3 cut(s)	87, 208, 387
FblI	GTMKAC	1 cut(s)	498
FokI	GGATG	3 cut(s)	6, 57, 335
FspBI	CTAG	4 cut(s)	162, 179, 189, 443
HaeIII	GGCC	3 cut(s)	157, 200, 481
Hin1II	CATG	3 cut(s)	91, 212, 391
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	2 cut(s)	295, 348
Hpy188III	TCNNGA	6 cut(s)	121, 219, 239, 247, 377, 506
Hpy8I	GTNNAC	1 cut(s)	499
HpyAV	CCTTC	2 cut(s)	50, 512
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	4 cut(s)	16, 138, 235, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 462
HpyF3I	CTNAG	1 cut(s)	378
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	3 cut(s)	91, 212, 391
LmnI	GCTCC	1 cut(s)	379
LpnPI	CCDG	5 cut(s)	77, 139, 232, 339, 390
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	4 cut(s)	162, 179, 189, 443
MaeII	ACGT	1 cut(s)	109
MboII	GAAGA	3 cut(s)	178, 224, 538
MhlI	GDGCHC	1 cut(s)	115
MluCI	AATT	7 cut(s)	75, 146, 274, 447, 491, 516, 530
MnlI	CCTC	4 cut(s)	185, 313, 481, 561
MseI	TTAA	4 cut(s)	74, 315, 401, 559
MvnI	CGCG	2 cut(s)	122, 240
MwoI	GCNNNNNNNGC	2 cut(s)	119, 462
NlaIII	CATG	3 cut(s)	91, 212, 391
NlaIV	GGNNCC	2 cut(s)	358, 375
NruI	TCGCGA	2 cut(s)	122, 240
PfeI	GAWTC	1 cut(s)	215
PmaCI	CACGTG	1 cut(s)	110
PmlI	CACGTG	1 cut(s)	110
Ppu21I	YACGTR	1 cut(s)	110
PspCI	CACGTG	1 cut(s)	110
PspN4I	GGNNCC	2 cut(s)	358, 375
RruI	TCGCGA	2 cut(s)	122, 240
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SaqAI	TTAA	4 cut(s)	74, 315, 401, 559
SduI	GDGCHC	1 cut(s)	115
SetI	ASST	8 cut(s)	30, 39, 112, 184, 196, 315, 428, 504
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	1 cut(s)	475
Sse9I	AATT	7 cut(s)	75, 146, 274, 447, 491, 516, 530
SsiI	CCGC	1 cut(s)	456
SspMI	CTAG	4 cut(s)	162, 179, 189, 443
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	1 cut(s)	101
TaiI	ACGT	1 cut(s)	112
TasI	AATT	7 cut(s)	75, 146, 274, 447, 491, 516, 530
TatI	WGTACW	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	4 cut(s)	74, 315, 401, 559
Tru9I	TTAA	4 cut(s)	74, 315, 401, 559
TspDTI	ATGAA	2 cut(s)	225, 529
XapI	RAATTY	3 cut(s)	274, 491, 530
XcmI	CCANNNNNNNNNTGG	1 cut(s)	367
XmaJI	CCTAGG	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	498
XspI	CTAG	4 cut(s)	162, 179, 189, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.