Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004990.1

Orthogroup ID

OG0031331

Physical Location & Seq

Genomic Coordinates Forward (+)

84407 .. 89842

Gene Structure 5436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004990.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atggttgaagaaacgggtgatgctgaagatccacgcgtcaaggtgcctgtaggagtagcatcccaccaaggaaagaaccagtttgtaactgagattgccactatatctgctgtgcaacacaataacctggtaaagttgtacggattctgcactgagggagttaaaaggctccttgtctatgagtatctggagaacaacagtcttgatcaagcattatttggagagagacgtttaaatcttgattggtcaacacgttttaatatatgcttgggcatagctagaggtttaacttatcttcacgaagaatcaagggttcgaattgtacacagagatgtgaaggccagtaatattctgcttgacactgatctcatccccaagatatcggattttggtttggctaagctttttgatgagaaaaagacccacataagtacccgtgttgcgggaacatttgggtatcttgcaccggaatatgccatgcgtggacaccttacagagaagactgatgtctttgcctttggtgttgtggctcttgaaattgtcagtggtaggccaaattctgatccgagtttgggtgaagaaatgacttatcttctcgaatgggtaagaactttgtttttggtcctccctgtctatccttccttgccacaaatgttccgagtttttttcagtgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

225

Amino Acids

25.43

Weight (kDa)

5.89

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031331)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8332515.1_g000001 Rmu_sc0004990.1_g000023

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	43
AccII	CGCG	1 cut(s)	36
AciI	CCGC	1 cut(s)	443
AclWI	GGATC	2 cut(s)	23, 557
AcsI	RAATTY	1 cut(s)	556
AcuI	CTGAAG	1 cut(s)	45
AfaI	GTAC	3 cut(s)	140, 324, 433
AfiI	CCNNNNNNNGG	2 cut(s)	442, 572
AflIII	ACRYGT	2 cut(s)	34, 251
AgsI	TTSAA	2 cut(s)	8, 536
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	2 cut(s)	278, 403
AluI	AGCT	2 cut(s)	278, 403
Alw26I	GTCTC	1 cut(s)	220
AlwI	GGATC	2 cut(s)	23, 557
AoxI	GGCC	2 cut(s)	339, 551
ApoI	RAATTY	1 cut(s)	556
AspS9I	GGNCC	1 cut(s)	622
AsuHPI	GGTGA	2 cut(s)	29, 587
AsuII	TTCGAA	1 cut(s)	316
AvaII	GGWCC	1 cut(s)	622
BaeI	ACNNNNGTAYC	2 cut(s)	415, 448
BanI	GGYRCC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	506
BciT130I	CCWGG	1 cut(s)	128
BclI	TGATCA	1 cut(s)	205
BcoDI	GTCTC	1 cut(s)	220
BfaI	CTAG	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	48
BlpI	GCTNAGC	1 cut(s)	399
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	622
BmgT120I	GGNCC	1 cut(s)	622
BmiI	GGNNCC	2 cut(s)	45, 170
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	2 cut(s)	10, 68
BoxI	GACNNNNGTC	1 cut(s)	506
BpiI	GAAGAC	1 cut(s)	506
BpmI	CTGGAG	1 cut(s)	209
Bpu1102I	GCTNAGC	1 cut(s)	399
Bpu14I	TTCGAA	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	67
BsaWI	WCCGGW	1 cut(s)	466
Bsc4I	CCNNNNNNNGG	2 cut(s)	442, 572
Bse1I	ACTGG	2 cut(s)	79, 342
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	2 cut(s)	59, 369
BseLI	CCNNNNNNNGG	2 cut(s)	442, 572
BseMII	CTCAG	2 cut(s)	81, 144
BseNI	ACTGG	2 cut(s)	79, 342
BsgI	GTGCAG	1 cut(s)	133
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	2 cut(s)	341, 553
BshNI	GGYRCC	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	467
BslI	CCNNNNNNNGG	2 cut(s)	442, 572
BsmAI	GTCTC	1 cut(s)	220
BsmBI	CGTCTC	1 cut(s)	220
BsnI	GGCC	2 cut(s)	341, 553
Bsp119I	TTCGAA	1 cut(s)	316
Bsp1407I	TGTACA	1 cut(s)	322
Bsp143I	GATC	4 cut(s)	28, 205, 364, 562
Bsp1720I	GCTNAGC	1 cut(s)	399
BspACI	CCGC	1 cut(s)	443
BspANI	GGCC	2 cut(s)	341, 553
BspCNI	CTCAG	2 cut(s)	82, 145
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	2 cut(s)	45, 170
BspPI	GGATC	2 cut(s)	23, 557
BspT104I	TTCGAA	1 cut(s)	316
BspT107I	GGYRCC	1 cut(s)	43
BsrGI	TGTACA	1 cut(s)	322
BsrI	ACTGG	2 cut(s)	79, 342
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	4 cut(s)	28, 205, 364, 562
BssT1I	CCWWGG	1 cut(s)	67
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	200
BstAUI	TGTACA	1 cut(s)	322
BstBI	TTCGAA	1 cut(s)	316
BstDEI	CTNAG	3 cut(s)	90, 153, 399
BstF5I	GGATG	2 cut(s)	59, 369
BstFNI	CGCG	1 cut(s)	36
BstKTI	GATC	4 cut(s)	31, 208, 367, 565
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	4 cut(s)	28, 205, 364, 562
BstNI	CCWGG	1 cut(s)	128
BstPAI	GACNNNNGTC	1 cut(s)	506
BstSCI	CCNGG	1 cut(s)	126
BstSFI	CTRYAG	1 cut(s)	48
BstUI	CGCG	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	506
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	2 cut(s)	341, 553
BtsCI	GGATG	2 cut(s)	59, 369
BtsIMutI	CAGTG	4 cut(s)	150, 360, 550, 676
Cfr13I	GGNCC	1 cut(s)	622
CseI	GACGC	1 cut(s)	25
CsiI	ACCWGGT	1 cut(s)	126
Csp6I	GTAC	3 cut(s)	139, 323, 432
CviAII	CATG	1 cut(s)	478
CviJI	RGCY	7 cut(s)	169, 278, 341, 398, 403, 530, 553
CviKI_1	RGCY	7 cut(s)	169, 278, 341, 398, 403, 530, 553
CviQI	GTAC	3 cut(s)	139, 323, 432
DdeI	CTNAG	3 cut(s)	90, 153, 399
DpnI	GATC	4 cut(s)	30, 207, 366, 564
DpnII	GATC	4 cut(s)	28, 205, 364, 562
DraI	TTTAAA	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	67
Eco32I	GATATC	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	622
Eco57I	CTGAAG	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	126
EcoRV	GATATC	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	67
Esp3I	CGTCTC	1 cut(s)	220
FaeI	CATG	1 cut(s)	481
FaiI	YATR	8 cut(s)	104, 180, 263, 265, 275, 428, 474, 479
FatI	CATG	1 cut(s)	477
FauI	CCCGC	1 cut(s)	436
FbaI	TGATCA	1 cut(s)	205
FokI	GGATG	2 cut(s)	46, 356
FspBI	CTAG	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	209
HaeIII	GGCC	2 cut(s)	341, 553
HapII	CCGG	1 cut(s)	467
HgaI	GACGC	1 cut(s)	25
Hin1II	CATG	1 cut(s)	481
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	2 cut(s)	144, 305
HpaII	CCGG	1 cut(s)	467
HphI	GGTGA	2 cut(s)	29, 587
Hpy166II	GTNNAC	3 cut(s)	249, 325, 485
Hpy188I	TCNGA	4 cut(s)	385, 562, 567, 659
Hpy188III	TCNNGA	6 cut(s)	188, 203, 239, 299, 533, 596
Hpy8I	GTNNAC	3 cut(s)	249, 325, 485
HpyAV	CCTTC	2 cut(s)	331, 648
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4IV	ACGT	2 cut(s)	229, 253
HpyCH4V	TGCA	3 cut(s)	115, 150, 464
HpyF3I	CTNAG	3 cut(s)	90, 153, 399
HpySE526I	ACGT	2 cut(s)	229, 253
Hsp92II	CATG	1 cut(s)	481
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	4 cut(s)	28, 205, 364, 562
LmnI	GCTCC	1 cut(s)	174
LpnPI	CCDG	8 cut(s)	60, 92, 113, 140, 173, 355, 480, 642
LweI	GCATC	2 cut(s)	10, 68
MabI	ACCWGGT	1 cut(s)	126
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	2 cut(s)	229, 253
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	4 cut(s)	30, 207, 366, 564
MboI	GATC	4 cut(s)	28, 205, 364, 562
MboII	GAAGA	7 cut(s)	20, 38, 287, 314, 511, 584, 590
MflI	RGATCY	1 cut(s)	28
MluCI	AATT	3 cut(s)	318, 537, 556
MluI	ACGCGT	1 cut(s)	34
MnlI	CCTC	3 cut(s)	148, 275, 635
MseI	TTAA	4 cut(s)	162, 233, 258, 287
MslI	CAYNNNNRTG	1 cut(s)	330
MspI	CCGG	1 cut(s)	467
MspR9I	CCNGG	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	1 cut(s)	36
NdeII	GATC	4 cut(s)	28, 205, 364, 562
NlaIII	CATG	1 cut(s)	481
NlaIV	GGNNCC	2 cut(s)	45, 170
NspV	TTCGAA	1 cut(s)	316
PfeI	GAWTC	2 cut(s)	144, 305
PshAI	GACNNNNGTC	1 cut(s)	506
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	45, 170
PspPI	GGNCC	1 cut(s)	622
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	3 cut(s)	140, 324, 433
RsaNI	GTAC	3 cut(s)	139, 323, 432
RseI	CAYNNNNRTG	1 cut(s)	330
SaqAI	TTAA	4 cut(s)	162, 233, 258, 287
Sau3AI	GATC	4 cut(s)	28, 205, 364, 562
Sau96I	GGNCC	1 cut(s)	622
ScrFI	CCNGG	1 cut(s)	128
SetI	ASST	8 cut(s)	45, 129, 232, 256, 280, 286, 405, 492
SexAI	ACCWGGT	1 cut(s)	126
SfaNI	GCATC	2 cut(s)	10, 68
SfcI	CTRYAG	1 cut(s)	48
SfuI	TTCGAA	1 cut(s)	316
SinI	GGWCC	1 cut(s)	622
SmiMI	CAYNNNNRTG	1 cut(s)	330
Sse9I	AATT	3 cut(s)	318, 537, 556
SsiI	CCGC	1 cut(s)	443
SspI	AATATT	1 cut(s)	349
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	1 cut(s)	200
TaiI	ACGT	2 cut(s)	232, 256
TaqI	TCGA	2 cut(s)	316, 597
TasI	AATT	3 cut(s)	318, 537, 556
TatI	WGTACW	1 cut(s)	322
TfiI	GAWTC	2 cut(s)	144, 305
Tru1I	TTAA	4 cut(s)	162, 233, 258, 287
Tru9I	TTAA	4 cut(s)	162, 233, 258, 287
TscAI	CASTG	4 cut(s)	157, 367, 550, 676
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	4 cut(s)	157, 367, 550, 676
VpaK11BI	GGWCC	1 cut(s)	622
XapI	RAATTY	1 cut(s)	556
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.