Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8354249.1

Orthogroup ID

OG0020425

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1025

Gene Structure 1025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8354249.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atggagaacttcccagtcatcaacttggagaaactcaacggtgaggagagaaaagctacaatggaaaccatcaaagatgcctgtgagaactggggtttctttgagctggtgaatcatgggctacccattgagcttctggacacagtggagaagatgacgaaaggccactacaagaattgtttggagcaaagatttaaggacctggtggccagcaaaggccttgaggcagttaactctgaggtcaaagacatggactgggagagcaccttctacctgaagcaccttccccactcaaacatctcagaagtcccagatctcgaggacttgtacaggaaggtcatgaaggagtttgctctgaaactggagaagctagcggaggagctcttggacttgttctgtgagaatcttggactggaaaaaggttacctcaagaaggtcttctatggttcacagggtagtcctacctttggcaccaaggtcagcaactaccctccgtgccccaccccggacctcatcaagggtctccggtcccacaccgacgccggcggcatcatccttctcttccaggatgacaaggtcagtggccttcagctcctcaaggacggtaaatgggttgatgtgcccccaatgcgccactccattgttatcaaccttggtgaccaacttgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009506 GO:0009593 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009692 GO:0009693 GO:0009719 GO:0009720 GO:0009723 GO:0009725 GO:0009726 GO:0009727 GO:0009735 GO:0009815 GO:0009987 GO:0010029 GO:0010030 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010817 GO:0012505 GO:0016020 GO:0016491 GO:0016638 GO:0016641 GO:0030054 GO:0030312 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043449 GO:0043450 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051606 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0055114 GO:0065007 GO:0065008 GO:0070542 GO:0070887 GO:0071229 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071396 GO:0071398 GO:0071704 GO:0071731 GO:0071732 GO:0071944 GO:0097366 GO:1900140 GO:1900673 GO:1900674 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

223

Amino Acids

25.37

Weight (kDa)

5.17

Isoelectric Point (pI)

32.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020425)

Species	Orthologous Gene IDs
prunus_persica	Prupe.3G209900_v2.0.a1
pyrus_communis	pycom09g03910
rosa_multiflora	Rmu_co8354249.1_g000001
rosa_samantha	Rh5AG014500 Rh5BG017900 Rh5CG015600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	470
AciI	CCGC	2 cut(s)	374, 546
AcoI	YGGCCR	1 cut(s)	207
AcuI	CTGAAG	2 cut(s)	296, 572
AcyI	GRCGYC	1 cut(s)	540
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	4 cut(s)	433, 467, 505, 517
AjnI	CCWGG	2 cut(s)	201, 564
AluBI	AGCT	6 cut(s)	56, 106, 133, 370, 382, 592
AluI	AGCT	6 cut(s)	56, 106, 133, 370, 382, 592
Alw21I	GWGCWC	2 cut(s)	266, 384
Alw26I	GTCTC	1 cut(s)	527
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	4 cut(s)	163, 207, 217, 583
Asp700I	GAANNNNTTC	1 cut(s)	437
AspLEI	GCGC	1 cut(s)	633
AspS9I	GGNCC	3 cut(s)	199, 508, 528
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	3 cut(s)	53, 121, 668
AsuNHI	GCTAGC	1 cut(s)	370
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	3 cut(s)	199, 508, 528
BaeGI	GKGCMC	2 cut(s)	500, 624
BalI	TGGCCA	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	470
BanII	GRGCYC	1 cut(s)	384
BbsI	GAAGAC	1 cut(s)	430
Bbv12I	GWGCWC	2 cut(s)	266, 384
BccI	CCATC	1 cut(s)	77
BciT130I	CCWGG	2 cut(s)	203, 566
BcnI	CCSGG	1 cut(s)	506
BcoDI	GTCTC	1 cut(s)	527
BfaI	CTAG	1 cut(s)	371
BglII	AGATCT	1 cut(s)	313
BisI	GCNGC	1 cut(s)	547
BlsI	GCNGC	1 cut(s)	548
Bme1390I	CCNGG	3 cut(s)	203, 506, 566
Bme18I	GGWCC	3 cut(s)	199, 508, 528
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	3 cut(s)	199, 508, 528
BmiI	GGNNCC	2 cut(s)	472, 530
BmrFI	CCNGG	3 cut(s)	203, 506, 566
BmrI	ACTGGG	3 cut(s)	8, 100, 265
BmsI	GCATC	2 cut(s)	67, 558
BmtI	GCTAGC	1 cut(s)	374
BmuI	ACTGGG	3 cut(s)	8, 100, 265
BpiI	GAAGAC	1 cut(s)	430
BpmI	CTGGAG	1 cut(s)	383
BpuEI	CTTGAG	3 cut(s)	242, 413, 581
BpuMI	CCSGG	1 cut(s)	506
BsaHI	GRCGYC	1 cut(s)	540
BsaI	GGTCTC	1 cut(s)	527
BsaJI	CCNNGG	3 cut(s)	474, 504, 652
BsaWI	WCCGGW	1 cut(s)	525
Bsc4I	CCNNNNNNNGG	4 cut(s)	433, 467, 505, 517
Bse118I	RCCGGY	1 cut(s)	542
Bse1I	ACTGG	5 cut(s)	14, 95, 260, 366, 417
BseBI	CCWGG	2 cut(s)	203, 566
BseDI	CCNNGG	3 cut(s)	474, 504, 652
BseGI	GGATG	2 cut(s)	552, 574
BseLI	CCNNNNNNNGG	4 cut(s)	433, 467, 505, 517
BseMII	CTCAG	2 cut(s)	228, 315
BseNI	ACTGG	5 cut(s)	14, 95, 260, 366, 417
BseRI	GAGGAG	3 cut(s)	59, 392, 584
BseSI	GKGCMC	2 cut(s)	500, 624
BshFI	GGCC	4 cut(s)	165, 209, 219, 585
BshNI	GGYRCC	1 cut(s)	470
BsiHKAI	GWGCWC	2 cut(s)	266, 384
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	3 cut(s)	506, 526, 543
BslFI	GGGAC	2 cut(s)	293, 514
BslI	CCNNNNNNNGG	4 cut(s)	433, 467, 505, 517
BsmAI	GTCTC	1 cut(s)	527
BsmFI	GGGAC	2 cut(s)	293, 514
BsnI	GGCC	4 cut(s)	165, 209, 219, 585
Bso31I	GGTCTC	1 cut(s)	527
BsoBI	CYCGRG	1 cut(s)	317
Bsp1286I	GDGCHC	4 cut(s)	266, 384, 500, 624
Bsp1407I	TGTACA	1 cut(s)	327
Bsp143I	GATC	1 cut(s)	313
BspACI	CCGC	2 cut(s)	374, 546
BspANI	GGCC	4 cut(s)	165, 209, 219, 585
BspCNI	CTCAG	2 cut(s)	229, 314
BspHI	TCATGA	1 cut(s)	339
BspLI	GGNNCC	2 cut(s)	472, 530
BspOI	GCTAGC	1 cut(s)	374
BspT107I	GGYRCC	1 cut(s)	470
BspTNI	GGTCTC	1 cut(s)	527
BsrFI	RCCGGY	1 cut(s)	542
BsrGI	TGTACA	1 cut(s)	327
BsrI	ACTGG	5 cut(s)	14, 95, 260, 366, 417
BssAI	RCCGGY	1 cut(s)	542
BssECI	CCNNGG	3 cut(s)	474, 504, 652
BssMI	GATC	1 cut(s)	313
BssNI	GRCGYC	1 cut(s)	540
BssT1I	CCWWGG	2 cut(s)	474, 652
Bst2UI	CCWGG	2 cut(s)	203, 566
Bst4CI	ACNGT	3 cut(s)	41, 145, 605
Bst6I	CTCTTC	1 cut(s)	566
BstACI	GRCGYC	1 cut(s)	540
BstAUI	TGTACA	1 cut(s)	327
BstC8I	GCNNGC	3 cut(s)	211, 372, 544
BstDEI	CTNAG	2 cut(s)	237, 301
BstEII	GGTNACC	2 cut(s)	422, 656
BstENI	CCTNNNNNAGG	2 cut(s)	431, 515
BstF5I	GGATG	2 cut(s)	552, 574
BstHHI	GCGC	1 cut(s)	633
BstKTI	GATC	1 cut(s)	316
BstMAI	GTCTC	1 cut(s)	527
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	1 cut(s)	628
BstNI	CCWGG	2 cut(s)	203, 566
BstPI	GGTNACC	2 cut(s)	422, 656
BstSCI	CCNGG	3 cut(s)	201, 504, 564
BstSLI	GKGCMC	2 cut(s)	500, 624
BstV2I	GAAGAC	1 cut(s)	430
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BsuRI	GGCC	4 cut(s)	165, 209, 219, 585
BtsCI	GGATG	2 cut(s)	552, 574
BtsIMutI	CAGTG	2 cut(s)	150, 586
Cac8I	GCNNGC	3 cut(s)	211, 372, 544
CciI	TCATGA	1 cut(s)	339
CfoI	GCGC	1 cut(s)	633
Cfr10I	RCCGGY	1 cut(s)	542
Cfr13I	GGNCC	3 cut(s)	199, 508, 528
CseI	GACGC	1 cut(s)	548
CsiI	ACCWGGT	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	328
CspCI	CAANNNNNGTGG	2 cut(s)	562, 597
CviAII	CATG	3 cut(s)	116, 250, 340
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	2 cut(s)	237, 301
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	566
EarI	CTCTTC	1 cut(s)	566
Ecl136II	GAGCTC	1 cut(s)	382
Eco130I	CCWWGG	2 cut(s)	474, 652
Eco147I	AGGCCT	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	384
Eco31I	GGTCTC	1 cut(s)	527
Eco47I	GGWCC	3 cut(s)	199, 508, 528
Eco53kI	GAGCTC	1 cut(s)	382
Eco57I	CTGAAG	2 cut(s)	296, 572
Eco88I	CYCGRG	1 cut(s)	317
Eco91I	GGTNACC	2 cut(s)	422, 656
EcoICRI	GAGCTC	1 cut(s)	382
EcoNI	CCTNNNNNAGG	2 cut(s)	431, 515
EcoO109I	RGGNCCY	1 cut(s)	199
EcoO65I	GGTNACC	2 cut(s)	422, 656
EcoRII	CCWGG	2 cut(s)	201, 564
EcoT14I	CCWWGG	2 cut(s)	474, 652
EcoT38I	GRGCYC	1 cut(s)	384
ErhI	CCWWGG	2 cut(s)	474, 652
FaeI	CATG	3 cut(s)	119, 253, 343
FaiI	YATR	4 cut(s)	117, 251, 341, 444
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FaqI	GGGAC	2 cut(s)	293, 514
FatI	CATG	3 cut(s)	115, 249, 339
Fnu4HI	GCNGC	1 cut(s)	547
FokI	GGATG	2 cut(s)	539, 581
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	1 cut(s)	547
FspBI	CTAG	1 cut(s)	371
GlaI	GCGC	1 cut(s)	632
GluI	GCNGC	1 cut(s)	547
GsuI	CTGGAG	1 cut(s)	383
HaeIII	GGCC	4 cut(s)	165, 209, 219, 585
HapII	CCGG	3 cut(s)	506, 526, 543
HgaI	GACGC	1 cut(s)	548
HhaI	GCGC	1 cut(s)	633
Hin1I	GRCGYC	1 cut(s)	540
Hin1II	CATG	3 cut(s)	119, 253, 343
Hin6I	GCGC	1 cut(s)	631
HinP1I	GCGC	1 cut(s)	631
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HinfI	GANTC	2 cut(s)	112, 403
HpaI	GTTAAC	1 cut(s)	232
HpaII	CCGG	3 cut(s)	506, 526, 543
HphI	GGTGA	3 cut(s)	53, 121, 668
Hpy166II	GTNNAC	2 cut(s)	232, 449
Hpy188I	TCNGA	3 cut(s)	238, 304, 357
Hpy188III	TCNNGA	4 cut(s)	137, 317, 340, 430
Hpy8I	GTNNAC	2 cut(s)	232, 449
Hpy99I	CGWCG	1 cut(s)	542
HpyAV	CCTTC	7 cut(s)	277, 293, 328, 337, 427, 566, 596
HpyCH4III	ACNGT	3 cut(s)	41, 145, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	628
HpyF3I	CTNAG	2 cut(s)	237, 301
Hsp92I	GRCGYC	1 cut(s)	540
Hsp92II	CATG	3 cut(s)	119, 253, 343
HspAI	GCGC	1 cut(s)	631
KroI	GCCGGC	1 cut(s)	542
KroNI	GCCGGC	1 cut(s)	544
KspAI	GTTAAC	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	313
LmnI	GCTCC	3 cut(s)	184, 379, 597
LweI	GCATC	2 cut(s)	67, 558
MabI	ACCWGGT	1 cut(s)	201
MaeI	CTAG	1 cut(s)	371
MaeIII	GTNAC	2 cut(s)	422, 656
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MboII	GAAGA	3 cut(s)	163, 430, 553
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	4 cut(s)	266, 384, 500, 624
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	1 cut(s)	175
MluNI	TGGCCA	1 cut(s)	209
MnlI	CCTC	9 cut(s)	37, 217, 232, 313, 370, 437, 501, 521, 605
Mox20I	TGGCCA	1 cut(s)	209
MreI	CGCCGGCG	1 cut(s)	542
MroNI	GCCGGC	1 cut(s)	542
MroXI	GAANNNNTTC	1 cut(s)	437
MscI	TGGCCA	1 cut(s)	209
MseI	TTAA	2 cut(s)	195, 231
Msp20I	TGGCCA	1 cut(s)	209
MspI	CCGG	3 cut(s)	506, 526, 543
MspR9I	CCNGG	3 cut(s)	203, 506, 566
MvaI	CCWGG	2 cut(s)	203, 566
MwoI	GCNNNNNNNGC	1 cut(s)	628
NaeI	GCCGGC	1 cut(s)	544
NciI	CCSGG	1 cut(s)	506
NdeII	GATC	1 cut(s)	313
NgoMIV	GCCGGC	1 cut(s)	542
NheI	GCTAGC	1 cut(s)	370
NlaIII	CATG	3 cut(s)	119, 253, 343
NlaIV	GGNNCC	2 cut(s)	472, 530
NmuCI	GTSAC	1 cut(s)	656
PaeR7I	CTCGAG	1 cut(s)	317
PagI	TCATGA	1 cut(s)	339
PceI	AGGCCT	1 cut(s)	219
PdiI	GCCGGC	1 cut(s)	544
PdmI	GAANNNNTTC	1 cut(s)	437
PfeI	GAWTC	2 cut(s)	112, 403
PflFI	GACNNNGTC	1 cut(s)	575
PfoI	TCCNGGA	1 cut(s)	564
PkrI	GCNGC	1 cut(s)	548
PpuMI	RGGWCCY	1 cut(s)	199
Psp124BI	GAGCTC	1 cut(s)	384
Psp5II	RGGWCCY	1 cut(s)	199
Psp6I	CCWGG	2 cut(s)	201, 564
PspEI	GGTNACC	2 cut(s)	422, 656
PspGI	CCWGG	2 cut(s)	201, 564
PspN4I	GGNNCC	2 cut(s)	472, 530
PspPI	GGNCC	3 cut(s)	199, 508, 528
PspPPI	RGGWCCY	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	313
PsyI	GACNNNGTC	1 cut(s)	575
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SacI	GAGCTC	1 cut(s)	384
SaqAI	TTAA	2 cut(s)	195, 231
SatI	GCNGC	1 cut(s)	547
Sau3AI	GATC	1 cut(s)	313
Sau96I	GGNCC	3 cut(s)	199, 508, 528
ScrFI	CCNGG	3 cut(s)	203, 506, 566
SduI	GDGCHC	4 cut(s)	266, 384, 500, 624
SexAI	ACCWGGT	1 cut(s)	201
SfaNI	GCATC	2 cut(s)	67, 558
Sfr274I	CTCGAG	1 cut(s)	317
SgrAI	CRCCGGYG	1 cut(s)	542
SinI	GGWCC	3 cut(s)	199, 508, 528
SlaI	CTCGAG	1 cut(s)	317
SmlI	CTYRAG	5 cut(s)	221, 317, 428, 596, 665
SmoI	CTYRAG	5 cut(s)	221, 317, 428, 596, 665
Sse9I	AATT	1 cut(s)	175
SseBI	AGGCCT	1 cut(s)	219
SsiI	CCGC	2 cut(s)	374, 546
SspMI	CTAG	1 cut(s)	371
SstI	GAGCTC	1 cut(s)	384
StuI	AGGCCT	1 cut(s)	219
StyD4I	CCNGG	3 cut(s)	201, 504, 564
StyI	CCWWGG	2 cut(s)	474, 652
TaaI	ACNGT	3 cut(s)	41, 145, 605
TaqI	TCGA	1 cut(s)	318
TasI	AATT	1 cut(s)	175
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	1 cut(s)	549
TfiI	GAWTC	2 cut(s)	112, 403
Tru1I	TTAA	2 cut(s)	195, 231
Tru9I	TTAA	2 cut(s)	195, 231
TscAI	CASTG	2 cut(s)	150, 586
TseFI	GTSAC	1 cut(s)	656
Tsp45I	GTSAC	1 cut(s)	656
TspDTI	ATGAA	1 cut(s)	356
TspGWI	ACGGA	1 cut(s)	483
TspRI	CASTG	2 cut(s)	150, 586
Tth111I	GACNNNGTC	1 cut(s)	575
VpaK11BI	GGWCC	3 cut(s)	199, 508, 528
XagI	CCTNNNNNAGG	2 cut(s)	431, 515
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133
XhoI	CTCGAG	1 cut(s)	317
XmnI	GAANNNNTTC	1 cut(s)	437
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.