Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0020425

Physical Location & Seq

Genomic Coordinates Reverse (-)

963497 .. 968733

Gene Structure 5237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG015600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAGAATTTCCCGGTTGTTAACATGGAGCAACTCAACGGTGAAGAGAGACAAGCAACCATGGAGAAGATAAACGATGCTTGTGAGAATTGGGGTTTCTTTGAGTTGGTGAACCATGGGATATCCCATGAGCTGATGGACAAGGTAGAGAAGCTCACAAAGGAGCACTATAGAAAGTGCATGGAGCAAAGGTTCAAGGAAATGGTGGCAAGCAAAGGCCTCGAATCTGTCAACTCTGAAATCAAAGATTTGGACTGGGAAAGCACCTTCTTCTTGCGCCACCTCCCCTTCTCTAACATTTCCCAAATCCCCGATCTCGACCAAGATTACAGGGAGGCCATGAAGGAATTTGCAGTGGAACTAGAGAAACTGGCTGAGCAACTGTTGGACTTGCTGTGTGAGAATCTGGGGCTGGATAAGGGTTACCTGAAGAAAGCTTTCTATGGATCCGAGGGACCAAATTTTGGGACCAAGGTGAGCAACTACCCTCCATGCCCCAAACCGGACCTGATCAAGGGACTCCGGGCCCACACCGACGCCGGTGGCATCATCCTACTATTCCAAGATGACAAGGTCAGCGGCCTCCAGCTCCTCAAGGATGACCAATGGATTGATGTGCCCCCAATGCACCACTCCATTGTCATCAACTTAGGTGACCAACTTGAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008152 GO:0009058 GO:0009692 GO:0009693 GO:0009987 GO:0010817 GO:0042445 GO:0042446 GO:0043449 GO:0043450 GO:0044237 GO:0044249 GO:0065007 GO:0065008 GO:0071704 GO:1900673 GO:1900674 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

223

Amino Acids

25.62

Weight (kDa)

4.82

Isoelectric Point (pI)

29.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	5 - 95	1.7e-16	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	159 - 223	1.4e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020425)

Species	Orthologous Gene IDs
prunus_persica	Prupe.3G209900_v2.0.a1
pyrus_communis	pycom09g03910
rosa_multiflora	Rmu_co8354249.1_g000001
rosa_samantha	Rh5AG014500 Rh5BG017900 Rh5CG015600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	464
AciI	CCGC	1 cut(s)	579
AclWI	GGATC	2 cut(s)	441, 454
AcsI	RAATTY	3 cut(s)	7, 347, 460
AcuI	CTGAAG	1 cut(s)	449
AcyI	GRCGYC	1 cut(s)	537
AfiI	CCNNNNNNNGG	4 cut(s)	464, 502, 514, 664
AgsI	TTSAA	1 cut(s)	196
AloI	GAACNNNNNNTCC	2 cut(s)	176, 208
AluBI	AGCT	4 cut(s)	133, 154, 437, 589
AluI	AGCT	4 cut(s)	133, 154, 437, 589
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	1 cut(s)	43
AlwI	GGATC	2 cut(s)	441, 454
AoxI	GGCC	4 cut(s)	217, 336, 525, 580
ApaI	GGGCCC	1 cut(s)	529
ApoI	RAATTY	3 cut(s)	7, 347, 460
Asp700I	GAANNNNTTC	1 cut(s)	437
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	5 cut(s)	455, 468, 505, 525, 526
AsuC2I	CCSGG	2 cut(s)	14, 524
AsuHPI	GGTGA	4 cut(s)	53, 121, 487, 665
AvaII	GGWCC	3 cut(s)	455, 468, 505
BaeGI	GKGCMC	2 cut(s)	529, 621
BamHI	GGATCC	1 cut(s)	446
BanII	GRGCYC	1 cut(s)	529
Bbv12I	GWGCWC	1 cut(s)	168
BccI	CCATC	1 cut(s)	130
BcgI	CGANNNNNNTGC	2 cut(s)	202, 236
BclI	TGATCA	1 cut(s)	510
BcnI	CCSGG	2 cut(s)	14, 524
BcoDI	GTCTC	1 cut(s)	43
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	169
BisI	GCNGC	1 cut(s)	580
BlpI	GCTNAGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	581
Bme1390I	CCNGG	2 cut(s)	14, 524
Bme18I	GGWCC	3 cut(s)	455, 468, 505
BmgT120I	GGNCC	5 cut(s)	455, 468, 505, 525, 526
BmiI	GGNNCC	4 cut(s)	448, 456, 469, 527
BmrFI	CCNGG	2 cut(s)	14, 524
BmrI	ACTGGG	1 cut(s)	265
BmsI	GCATC	2 cut(s)	67, 555
BmuI	ACTGGG	1 cut(s)	265
BpmI	CTGGAG	1 cut(s)	569
Bpu1102I	GCTNAGC	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	578
BpuMI	CCSGG	2 cut(s)	14, 524
BsaHI	GRCGYC	1 cut(s)	537
BsaJI	CCNNGG	4 cut(s)	60, 115, 450, 471
BsaWI	WCCGGW	1 cut(s)	502
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	4 cut(s)	464, 502, 514, 664
Bse118I	RCCGGY	1 cut(s)	539
Bse1I	ACTGG	2 cut(s)	260, 375
BseDI	CCNNGG	4 cut(s)	60, 115, 450, 471
BseGI	GGATG	2 cut(s)	549, 604
BseLI	CCNNNNNNNGG	4 cut(s)	464, 502, 514, 664
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	2 cut(s)	260, 375
BseRI	GAGGAG	1 cut(s)	581
BseSI	GKGCMC	2 cut(s)	529, 621
BshFI	GGCC	4 cut(s)	219, 338, 527, 582
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	4 cut(s)	14, 503, 523, 540
BslFI	GGGAC	3 cut(s)	468, 481, 531
BslI	CCNNNNNNNGG	4 cut(s)	464, 502, 514, 664
BsmAI	GTCTC	1 cut(s)	43
BsmFI	GGGAC	3 cut(s)	468, 481, 531
BsnI	GGCC	4 cut(s)	219, 338, 527, 582
Bsp120I	GGGCCC	1 cut(s)	525
Bsp1286I	GDGCHC	3 cut(s)	168, 529, 621
Bsp143I	GATC	3 cut(s)	313, 446, 510
Bsp1720I	GCTNAGC	1 cut(s)	375
Bsp19I	CCATGG	2 cut(s)	60, 115
BspACI	CCGC	1 cut(s)	579
BspANI	GGCC	4 cut(s)	219, 338, 527, 582
BspCNI	CTCAG	1 cut(s)	367
BspLI	GGNNCC	4 cut(s)	448, 456, 469, 527
BspPI	GGATC	2 cut(s)	441, 454
BsrFI	RCCGGY	1 cut(s)	539
BsrI	ACTGG	2 cut(s)	260, 375
BssAI	RCCGGY	1 cut(s)	539
BssECI	CCNNGG	4 cut(s)	60, 115, 450, 471
BssMI	GATC	3 cut(s)	313, 446, 510
BssNI	GRCGYC	1 cut(s)	537
BssT1I	CCWWGG	3 cut(s)	60, 115, 471
Bst4CI	ACNGT	2 cut(s)	41, 384
Bst6I	CTCTTC	1 cut(s)	39
BstACI	GRCGYC	1 cut(s)	537
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	2 cut(s)	375, 649
BstDSI	CCRYGG	2 cut(s)	60, 115
BstEII	GGTNACC	2 cut(s)	422, 653
BstENI	CCTNNNNNAGG	1 cut(s)	512
BstF5I	GGATG	2 cut(s)	549, 604
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	3 cut(s)	316, 449, 513
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	3 cut(s)	313, 446, 510
BstMWI	GCNNNNNNNGC	1 cut(s)	625
BstPI	GGTNACC	2 cut(s)	422, 653
BstSCI	CCNGG	2 cut(s)	12, 522
BstSFI	CTRYAG	1 cut(s)	169
BstSLI	GKGCMC	2 cut(s)	529, 621
BstX2I	RGATCY	1 cut(s)	446
BstYI	RGATCY	1 cut(s)	446
BsuRI	GGCC	4 cut(s)	219, 338, 527, 582
BtgI	CCRYGG	2 cut(s)	60, 115
BtsCI	GGATG	2 cut(s)	549, 604
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	1 cut(s)	211
CfoI	GCGC	1 cut(s)	279
Cfr10I	RCCGGY	1 cut(s)	539
Cfr13I	GGNCC	5 cut(s)	455, 468, 505, 525, 526
CseI	GACGC	1 cut(s)	545
CviAII	CATG	7 cut(s)	25, 61, 116, 128, 181, 340, 492
DdeI	CTNAG	2 cut(s)	375, 649
DpnI	GATC	3 cut(s)	315, 448, 512
DpnII	GATC	3 cut(s)	313, 446, 510
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco130I	CCWWGG	3 cut(s)	60, 115, 471
Eco147I	AGGCCT	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	529
Eco32I	GATATC	1 cut(s)	123
Eco47I	GGWCC	3 cut(s)	455, 468, 505
Eco57I	CTGAAG	1 cut(s)	449
Eco91I	GGTNACC	2 cut(s)	422, 653
EcoNI	CCTNNNNNAGG	1 cut(s)	512
EcoO65I	GGTNACC	2 cut(s)	422, 653
EcoRV	GATATC	1 cut(s)	123
EcoT14I	CCWWGG	3 cut(s)	60, 115, 471
EcoT38I	GRGCYC	1 cut(s)	529
ErhI	CCWWGG	3 cut(s)	60, 115, 471
FaeI	CATG	7 cut(s)	28, 64, 119, 131, 184, 343, 495
FaqI	GGGAC	3 cut(s)	468, 481, 531
FatI	CATG	7 cut(s)	24, 60, 115, 127, 180, 339, 491
FbaI	TGATCA	1 cut(s)	510
Fnu4HI	GCNGC	1 cut(s)	580
FokI	GGATG	2 cut(s)	536, 611
FriOI	GRGCYC	1 cut(s)	529
Fsp4HI	GCNGC	1 cut(s)	580
FspBI	CTAG	1 cut(s)	362
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	1 cut(s)	580
GsuI	CTGGAG	1 cut(s)	569
HaeIII	GGCC	4 cut(s)	219, 338, 527, 582
HapII	CCGG	4 cut(s)	14, 503, 523, 540
HgaI	GACGC	1 cut(s)	545
HhaI	GCGC	1 cut(s)	279
Hin1I	GRCGYC	1 cut(s)	537
Hin1II	CATG	7 cut(s)	28, 64, 119, 131, 184, 343, 495
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HincII	GTYRAC	2 cut(s)	22, 232
HindII	GTYRAC	2 cut(s)	22, 232
HindIII	AAGCTT	1 cut(s)	435
HinfI	GANTC	3 cut(s)	224, 403, 519
HpaI	GTTAAC	1 cut(s)	22
HpaII	CCGG	4 cut(s)	14, 503, 523, 540
HphI	GGTGA	4 cut(s)	53, 121, 487, 665
Hpy166II	GTNNAC	3 cut(s)	22, 112, 232
Hpy188I	TCNGA	2 cut(s)	238, 451
Hpy188III	TCNNGA	1 cut(s)	317
Hpy8I	GTNNAC	3 cut(s)	22, 112, 232
Hpy99I	CGWCG	1 cut(s)	539
HpyAV	CCTTC	3 cut(s)	277, 298, 337
HpyCH4III	ACNGT	2 cut(s)	41, 384
HpyCH4V	TGCA	3 cut(s)	180, 353, 628
HpyF10VI	GCNNNNNNNGC	1 cut(s)	625
HpyF3I	CTNAG	2 cut(s)	375, 649
Hsp92I	GRCGYC	1 cut(s)	537
Hsp92II	CATG	7 cut(s)	28, 64, 119, 131, 184, 343, 495
HspAI	GCGC	1 cut(s)	277
Ksp22I	TGATCA	1 cut(s)	510
KspAI	GTTAAC	1 cut(s)	22
Kzo9I	GATC	3 cut(s)	313, 446, 510
LmnI	GCTCC	4 cut(s)	28, 163, 184, 594
LweI	GCATC	2 cut(s)	67, 555
MaeI	CTAG	1 cut(s)	362
MaeIII	GTNAC	2 cut(s)	422, 653
MalI	GATC	3 cut(s)	315, 448, 512
MboI	GATC	3 cut(s)	313, 446, 510
MboII	GAAGA	4 cut(s)	56, 79, 262, 442
MflI	RGATCY	1 cut(s)	446
MhlI	GDGCHC	3 cut(s)	168, 529, 621
MluCI	AATT	4 cut(s)	7, 88, 347, 460
MlyI	GAGTC	1 cut(s)	513
MmeI	TCCRAC	1 cut(s)	366
MnlI	CCTC	8 cut(s)	230, 293, 328, 445, 498, 593, 602, 658
MroXI	GAANNNNTTC	1 cut(s)	437
MseI	TTAA	1 cut(s)	21
MspA1I	CMGCKG	1 cut(s)	579
MspI	CCGG	4 cut(s)	14, 503, 523, 540
MspR9I	CCNGG	2 cut(s)	14, 524
MwoI	GCNNNNNNNGC	1 cut(s)	625
NciI	CCSGG	2 cut(s)	14, 524
NcoI	CCATGG	2 cut(s)	60, 115
NdeII	GATC	3 cut(s)	313, 446, 510
NlaIII	CATG	7 cut(s)	28, 64, 119, 131, 184, 343, 495
NlaIV	GGNNCC	4 cut(s)	448, 456, 469, 527
NmuCI	GTSAC	1 cut(s)	653
PceI	AGGCCT	1 cut(s)	219
PdmI	GAANNNNTTC	1 cut(s)	437
PfeI	GAWTC	2 cut(s)	224, 403
PflFI	GACNNNGTC	1 cut(s)	572
PflMI	CCANNNNNTGG	1 cut(s)	464
PkrI	GCNGC	1 cut(s)	581
PleI	GAGTC	1 cut(s)	513
PpsI	GAGTC	1 cut(s)	513
PspEI	GGTNACC	2 cut(s)	422, 653
PspN4I	GGNNCC	4 cut(s)	448, 456, 469, 527
PspOMI	GGGCCC	1 cut(s)	525
PspPI	GGNCC	5 cut(s)	455, 468, 505, 525, 526
PsuI	RGATCY	1 cut(s)	446
PsyI	GACNNNGTC	1 cut(s)	572
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	1 cut(s)	580
Sau3AI	GATC	3 cut(s)	313, 446, 510
Sau96I	GGNCC	5 cut(s)	455, 468, 505, 525, 526
SchI	GAGTC	1 cut(s)	513
ScrFI	CCNGG	2 cut(s)	14, 524
SduI	GDGCHC	3 cut(s)	168, 529, 621
SfaNI	GCATC	2 cut(s)	67, 555
SfcI	CTRYAG	1 cut(s)	169
SgrAI	CRCCGGYG	1 cut(s)	539
SinI	GGWCC	3 cut(s)	455, 468, 505
SmlI	CTYRAG	2 cut(s)	593, 662
SmoI	CTYRAG	2 cut(s)	593, 662
Sse9I	AATT	4 cut(s)	7, 88, 347, 460
SseBI	AGGCCT	1 cut(s)	219
SsiI	CCGC	1 cut(s)	579
SspMI	CTAG	1 cut(s)	362
StuI	AGGCCT	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	12, 522
StyI	CCWWGG	3 cut(s)	60, 115, 471
TaaI	ACNGT	2 cut(s)	41, 384
TaqI	TCGA	2 cut(s)	222, 318
TasI	AATT	4 cut(s)	7, 88, 347, 460
TauI	GCSGC	1 cut(s)	582
TfiI	GAWTC	2 cut(s)	224, 403
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	1 cut(s)	360
TseFI	GTSAC	1 cut(s)	653
Tsp45I	GTSAC	1 cut(s)	653
TspDTI	ATGAA	1 cut(s)	356
TspRI	CASTG	1 cut(s)	360
Tth111I	GACNNNGTC	1 cut(s)	572
Van91I	CCANNNNNTGG	1 cut(s)	464
VpaK11BI	GGWCC	3 cut(s)	455, 468, 505
XagI	CCTNNNNNAGG	1 cut(s)	512
XapI	RAATTY	3 cut(s)	7, 347, 460
XmnI	GAANNNNTTC	1 cut(s)	437
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.