Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8358139.1

Orthogroup ID

OG0031681

Physical Location & Seq

Genomic Coordinates Forward (+)

145 .. 978

Gene Structure 834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8358139.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atggggaatacttgtgttggacccagcatttctaagaatggcttcttccaatcagtttcggctgcaatgtggcgaacccctttgcctgatgactctcttcatactagtggaggagaaactgccaatgagcagcagcccagggaacccgagtcgcctcttccggtacaagacaagcccccgcaacaagtgatgaccataccaaaacctgaaactgagccgaaacaaccctccaaacccaggaagccgccgcagatgaagagggtccctagtgcagggcttcgtgctggttcagtgttgcaaacaaagacgggaaaaataaaggagttttatagttttgggaggaaattgggacaggggcagtttggggtaacaactctgtgcgtggagaaggccacggggaaagagtatgcgtgcaagtcgattgcaaaaaggaagttgataacagacgatgatgtggaggatgtgaggagggagattcagataatgcatcatctggcaggccaccctaatgttatatctataaagggtgcttatgaggatgctgtagcagttcatgtagttatggaattatgtgcaggaggtgagctctttgataggattatccagcgtggccattatacagaaagaaaggcagctgagctcactaggactatagtcggagttgtagaagcttgccattcattaggagttatgcatcgagaccttaagcccgagaattttctctttgtcagtcaggaagaggatgcacttcttaaaactattgattttggattatctattttcttgaagccaggtaattctaaatctttcatagtgcggttttggtatcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005509 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0031090 GO:0031903 GO:0031984 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042175 GO:0042221 GO:0042579 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0098588 GO:0098805 GO:0098827 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

277

Amino Acids

30.76

Weight (kDa)

8.87

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031681)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8358139.1_g000001
rosa_samantha	Rh1BG094500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	179, 245, 248, 817
AcoI	YGGCCR	1 cut(s)	610
AcsI	RAATTY	1 cut(s)	715
AfaI	GTAC	1 cut(s)	165
AfiI	CCNNNNNNNGG	2 cut(s)	237, 272
AflII	CTTAAG	1 cut(s)	704
AgsI	TTSAA	1 cut(s)	787
AhlI	ACTAGT	1 cut(s)	104
AjnI	CCWGG	3 cut(s)	137, 236, 790
AluBI	AGCT	4 cut(s)	586, 635, 640, 671
AluI	AGCT	4 cut(s)	586, 635, 640, 671
Alw21I	GWGCWC	2 cut(s)	588, 642
Alw26I	GTCTC	1 cut(s)	693
Ama87I	CYCGRG	2 cut(s)	146, 710
AoxI	GGCC	3 cut(s)	390, 499, 610
ApeKI	GCWGC	4 cut(s)	62, 130, 133, 632
ApoI	RAATTY	1 cut(s)	715
Asp700I	GAANNNNTTC	1 cut(s)	41
AspS9I	GGNCC	2 cut(s)	20, 262
AsuHPI	GGTGA	1 cut(s)	593
AvaI	CYCGRG	2 cut(s)	146, 710
AvaII	GGWCC	2 cut(s)	20, 262
BalI	TGGCCA	1 cut(s)	612
BanII	GRGCYC	2 cut(s)	588, 642
Bbv12I	GWGCWC	2 cut(s)	588, 642
BbvI	GCAGC	4 cut(s)	49, 142, 145, 644
BciT130I	CCWGG	3 cut(s)	139, 238, 792
BcoDI	GTCTC	1 cut(s)	693
BcuI	ACTAGT	1 cut(s)	104
BfaI	CTAG	3 cut(s)	105, 267, 645
BfmI	CTRYAG	2 cut(s)	543, 651
BfrI	CTTAAG	1 cut(s)	704
BisI	GCNGC	6 cut(s)	63, 131, 134, 245, 248, 633
BlpI	GCTNAGC	1 cut(s)	636
BlsI	GCNGC	6 cut(s)	64, 132, 135, 246, 249, 634
Bme1390I	CCNGG	3 cut(s)	139, 238, 792
Bme18I	GGWCC	2 cut(s)	20, 262
BmeT110I	CYCGRG	2 cut(s)	146, 710
BmgT120I	GGNCC	2 cut(s)	20, 262
BmiI	GGNNCC	4 cut(s)	22, 144, 263, 264
BmrFI	CCNGG	3 cut(s)	139, 238, 792
BmsI	GCATC	4 cut(s)	496, 529, 703, 733
BoxI	GACNNNNGTC	1 cut(s)	653
BplI	GAGNNNNNCTC	2 cut(s)	570, 602
Bpu1102I	GCTNAGC	1 cut(s)	636
BsaI	GGTCTC	1 cut(s)	693
BsaJI	CCNNGG	4 cut(s)	137, 138, 236, 393
BsaWI	WCCGGW	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	2 cut(s)	237, 272
Bse3DI	GCAATG	1 cut(s)	72
BseBI	CCWGG	3 cut(s)	139, 238, 792
BseDI	CCNNGG	4 cut(s)	137, 138, 236, 393
BseGI	GGATG	3 cut(s)	466, 544, 748
BseLI	CCNNNNNNNGG	2 cut(s)	237, 272
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	2 cut(s)	204, 627
BseRI	GAGGAG	2 cut(s)	126, 481
BseXI	GCAGC	4 cut(s)	49, 142, 145, 644
BseYI	CCCAGC	1 cut(s)	23
BsgI	GTGCAG	2 cut(s)	291, 594
BshFI	GGCC	3 cut(s)	392, 501, 612
BsiHKAI	GWGCWC	2 cut(s)	588, 642
BsiHKCI	CYCGRG	2 cut(s)	146, 710
BsiSI	CCGG	1 cut(s)	161
BslFI	GGGAC	2 cut(s)	248, 363
BslI	CCNNNNNNNGG	2 cut(s)	237, 272
BsmAI	GTCTC	1 cut(s)	693
BsmFI	GGGAC	2 cut(s)	248, 363
BsnI	GGCC	3 cut(s)	392, 501, 612
Bso31I	GGTCTC	1 cut(s)	693
BsoBI	CYCGRG	2 cut(s)	146, 710
Bsp1286I	GDGCHC	2 cut(s)	588, 642
Bsp1720I	GCTNAGC	1 cut(s)	636
BspACI	CCGC	4 cut(s)	179, 245, 248, 817
BspANI	GGCC	3 cut(s)	392, 501, 612
BspCNI	CTCAG	2 cut(s)	205, 628
BspLI	GGNNCC	4 cut(s)	22, 144, 263, 264
BspTI	CTTAAG	1 cut(s)	704
BspTNI	GGTCTC	1 cut(s)	693
BsrDI	GCAATG	1 cut(s)	72
BssECI	CCNNGG	4 cut(s)	137, 138, 236, 393
Bst2UI	CCWGG	3 cut(s)	139, 238, 792
Bst6I	CTCTTC	4 cut(s)	102, 162, 251, 732
BstAFI	CTTAAG	1 cut(s)	704
BstC8I	GCNNGC	3 cut(s)	412, 499, 673
BstDEI	CTNAG	3 cut(s)	33, 213, 636
BstDSI	CCRYGG	1 cut(s)	393
BstENI	CCTNNNNNAGG	1 cut(s)	270
BstF5I	GGATG	3 cut(s)	466, 544, 748
BstMAI	GTCTC	1 cut(s)	693
BstNI	CCWGG	3 cut(s)	139, 238, 792
BstPAI	GACNNNNGTC	1 cut(s)	653
BstSCI	CCNGG	3 cut(s)	137, 236, 790
BstSFI	CTRYAG	2 cut(s)	543, 651
BstV1I	GCAGC	4 cut(s)	49, 142, 145, 644
BsuRI	GGCC	3 cut(s)	392, 501, 612
BtgI	CCRYGG	1 cut(s)	393
BtsCI	GGATG	3 cut(s)	466, 544, 748
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	3 cut(s)	412, 499, 673
Cfr13I	GGNCC	2 cut(s)	20, 262
Csp6I	GTAC	1 cut(s)	164
CviAII	CATG	1 cut(s)	554
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	3 cut(s)	33, 213, 636
EaeI	YGGCCR	1 cut(s)	610
Eam1104I	CTCTTC	4 cut(s)	102, 162, 251, 732
EarI	CTCTTC	4 cut(s)	102, 162, 251, 732
Ecl136II	GAGCTC	2 cut(s)	586, 640
Eco24I	GRGCYC	2 cut(s)	588, 642
Eco31I	GGTCTC	1 cut(s)	693
Eco47I	GGWCC	2 cut(s)	20, 262
Eco53kI	GAGCTC	2 cut(s)	586, 640
Eco88I	CYCGRG	2 cut(s)	146, 710
EcoICRI	GAGCTC	2 cut(s)	586, 640
EcoNI	CCTNNNNNAGG	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	262
EcoRII	CCWGG	3 cut(s)	137, 236, 790
EcoT22I	ATGCAT	2 cut(s)	489, 696
EcoT38I	GRGCYC	2 cut(s)	588, 642
FaeI	CATG	1 cut(s)	557
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FaqI	GGGAC	2 cut(s)	248, 363
FatI	CATG	1 cut(s)	553
FauI	CCCGC	1 cut(s)	186
Fnu4HI	GCNGC	6 cut(s)	63, 131, 134, 245, 248, 633
FokI	GGATG	3 cut(s)	473, 551, 755
FriOI	GRGCYC	2 cut(s)	588, 642
Fsp4HI	GCNGC	6 cut(s)	63, 131, 134, 245, 248, 633
FspBI	CTAG	3 cut(s)	105, 267, 645
GluI	GCNGC	6 cut(s)	63, 131, 134, 245, 248, 633
GsaI	CCCAGC	1 cut(s)	27
HaeIII	GGCC	3 cut(s)	392, 501, 612
HapII	CCGG	1 cut(s)	161
Hin1II	CATG	1 cut(s)	557
HindIII	AAGCTT	1 cut(s)	669
HinfI	GANTC	3 cut(s)	92, 149, 475
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	1 cut(s)	593
Hpy188I	TCNGA	2 cut(s)	480, 659
Hpy188III	TCNNGA	3 cut(s)	698, 734, 784
HpyAV	CCTTC	1 cut(s)	382
HpyCH4V	TGCA	9 cut(s)	65, 272, 298, 414, 425, 487, 575, 694, 746
HpyF3I	CTNAG	3 cut(s)	33, 213, 636
Hsp92II	CATG	1 cut(s)	557
KflI	GGGWCCC	1 cut(s)	262
Lsp1109I	GCAGC	4 cut(s)	49, 142, 145, 644
LweI	GCATC	4 cut(s)	496, 529, 703, 733
MaeI	CTAG	3 cut(s)	105, 267, 645
MaeIII	GTNAC	1 cut(s)	367
MboII	GAAGA	5 cut(s)	37, 89, 149, 268, 749
MhlI	GDGCHC	2 cut(s)	588, 642
MlsI	TGGCCA	1 cut(s)	612
MluCI	AATT	4 cut(s)	344, 566, 715, 796
MluNI	TGGCCA	1 cut(s)	612
MlyI	GAGTC	2 cut(s)	86, 158
MmeI	TCCRAC	1 cut(s)	637
Mox20I	TGGCCA	1 cut(s)	612
Mph1103I	ATGCAT	2 cut(s)	489, 696
MroXI	GAANNNNTTC	1 cut(s)	41
MscI	TGGCCA	1 cut(s)	612
MseI	TTAA	2 cut(s)	705, 753
MslI	CAYNNNNRTG	2 cut(s)	105, 507
Msp20I	TGGCCA	1 cut(s)	612
MspA1I	CMGCKG	1 cut(s)	635
MspCI	CTTAAG	1 cut(s)	704
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	3 cut(s)	139, 238, 792
MvaI	CCWGG	3 cut(s)	139, 238, 792
NlaIII	CATG	1 cut(s)	557
NlaIV	GGNNCC	4 cut(s)	22, 144, 263, 264
NsiI	ATGCAT	2 cut(s)	489, 696
PasI	CCCWGGG	1 cut(s)	138
PdmI	GAANNNNTTC	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	475
PkrI	GCNGC	6 cut(s)	64, 132, 135, 246, 249, 634
PleI	GAGTC	2 cut(s)	86, 157
PpsI	GAGTC	2 cut(s)	86, 157
PpuMI	RGGWCCY	1 cut(s)	262
PshAI	GACNNNNGTC	1 cut(s)	653
Psp124BI	GAGCTC	2 cut(s)	588, 642
Psp5II	RGGWCCY	1 cut(s)	262
Psp6I	CCWGG	3 cut(s)	137, 236, 790
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	3 cut(s)	137, 236, 790
PspN4I	GGNNCC	4 cut(s)	22, 144, 263, 264
PspPI	GGNCC	2 cut(s)	20, 262
PspPPI	RGGWCCY	1 cut(s)	262
PvuII	CAGCTG	1 cut(s)	635
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
RseI	CAYNNNNRTG	2 cut(s)	105, 507
SacI	GAGCTC	2 cut(s)	588, 642
SaqAI	TTAA	2 cut(s)	705, 753
SatI	GCNGC	6 cut(s)	63, 131, 134, 245, 248, 633
Sau96I	GGNCC	2 cut(s)	20, 262
SchI	GAGTC	2 cut(s)	86, 158
ScrFI	CCNGG	3 cut(s)	139, 238, 792
SduI	GDGCHC	2 cut(s)	588, 642
SetI	ASST	8 cut(s)	208, 583, 588, 637, 642, 673, 705, 796
SfaNI	GCATC	4 cut(s)	496, 529, 703, 733
SfcI	CTRYAG	2 cut(s)	543, 651
SinI	GGWCC	2 cut(s)	20, 262
SmiMI	CAYNNNNRTG	2 cut(s)	105, 507
SmlI	CTYRAG	1 cut(s)	704
SmoI	CTYRAG	1 cut(s)	704
SpeI	ACTAGT	1 cut(s)	104
Sse9I	AATT	4 cut(s)	344, 566, 715, 796
SsiI	CCGC	4 cut(s)	179, 245, 248, 817
SspMI	CTAG	3 cut(s)	105, 267, 645
SstI	GAGCTC	2 cut(s)	588, 642
StyD4I	CCNGG	3 cut(s)	137, 236, 790
TaqI	TCGA	2 cut(s)	419, 697
TasI	AATT	4 cut(s)	344, 566, 715, 796
TauI	GCSGC	2 cut(s)	247, 250
TfiI	GAWTC	1 cut(s)	475
Tru1I	TTAA	2 cut(s)	705, 753
Tru9I	TTAA	2 cut(s)	705, 753
TscAI	CASTG	1 cut(s)	297
TseI	GCWGC	4 cut(s)	62, 130, 133, 632
TspDTI	ATGAA	5 cut(s)	89, 269, 542, 669, 799
TspRI	CASTG	1 cut(s)	297
Vha464I	CTTAAG	1 cut(s)	704
VpaK11BI	GGWCC	2 cut(s)	20, 262
XagI	CCTNNNNNAGG	1 cut(s)	270
XapI	RAATTY	1 cut(s)	715
XmnI	GAANNNNTTC	1 cut(s)	41
XspI	CTAG	3 cut(s)	105, 267, 645
Zsp2I	ATGCAT	2 cut(s)	489, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.