Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0031681

Physical Location & Seq

Genomic Coordinates Reverse (-)

16504914 .. 16510621

Gene Structure 5708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG094500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGGGAATACTTGTGTTGGACCCAGCATTTCCAAGAATGGCTTCTTCCAATCAGTTTCGGCTGCAATGTGGCGAACCCCTTTGCCTGATGACTCTCTTCATACTAGTGGAGGAGAAACTGTCAATGAGCAGCAGCCCAGGGAACCCGAGTCGCCTCTTCCGGTACAAGACAAGCCCCCGCAACAAGTGATGACCATACCAAAACCTGAAACTGAGCCGAAGCAACCCTCCAAACCCAGGAAGCCGCAGATGAAGAGGGTCCCTAGTGCAGGGCTTCGTGCTGGTTCAGTGTTGCAAACAAAGACGGGAAAAATAAAGGAGTTTTATAGTTTTGGGAGGAAATTGGGACAGGGGCAGTTTGGGGTAACAACTCTGTGCGTGGAGAAGGCCACGGGAAAAGAGTATGCGTGCAAGTCGATTGCAAAAAGGAAGTTGATAACTGACGATGATGTGGAGGATGTGAGGAGGGAGATTCAGATAATGCATCATCTGGCAGGCCACCCTAATGTTATATCTATAAAGGGTGCTTATGAGGATGCTGTAGCAGTTCATGTTGTTATGGAATTATGTGCAGGAGGTGAGCTCTTTGATAGGATTATCCAGCGTGGCCATTATACAGAAAGAAAGGCAGCTGAGCTCACTAGGACTATAGTCGGAGTTGTAGAAGCTTGCCATTCATTAGGAGTTATGCATCGAGACCTTAAGCCCGAGAATTTTCTTTTTGTCTGTCAGGAGGAGGATGCACTTCTTAAAACTATTGATTTTGGATTATCTATTTTCTTGAAGCCAGGCCACCCCTGGGTGCAAGTTGATGGTGTGGCTCCTGATAAGGCTCTTGATTCTGCAGTTCTAAGTCGCTTAAAGCAATTTTCAGCTATGAACAAGCTGAAGAAAATGGCTCTTAGGGTTATTGCTGAGAGCTTATCTGAAGAAGAAATAGCTGGCCTGAAAGAAATGTTCAAGATGATAGACACTGACAGCAGTGGCCAAATCACTTTTGAAGAACTTAAGGCTGGACTGAAAAAATTTGGAGCTACTCTCAAGGAGTCAGAAATTTATGATCTGATGCAAGCAGATGGACGCATAGATTACAACGAGTTTGTGGCTATGATGCAAAAAGGAAATTTTGTTGGCCCGGCCAAGAAGGGCCTGCAAAGTAGCTTCAGTATTAACTTCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005509 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0031090 GO:0031903 GO:0031984 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042175 GO:0042221 GO:0042579 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0098588 GO:0098805 GO:0098827 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

393

Amino Acids

43.51

Weight (kDa)

8.37

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	109 - 265	1.6e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	111 - 261	4.1e-16	Protein tyrosine and serine/threonine kinase
EF-hand_1	PF00036	316 - 343	2.2e-08	EF hand domain
EF-hand_6	PF13405	316 - 344	4.7e-07	EF-hand domain
EF-hand_7	PF13499	316 - 372	1e-09	EF-hand domain pair
EF-hand_5	PF13202	316 - 338	6.2e-06	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0031681)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8358139.1_g000001
rosa_samantha	Rh1BG094500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	179, 245
AcoI	YGGCCR	3 cut(s)	607, 985, 1137
AcsI	RAATTY	4 cut(s)	712, 1025, 1053, 1123
AcuI	CTGAAG	4 cut(s)	908, 948, 1147, 1159
AfaI	GTAC	1 cut(s)	165
AfiI	CCNNNNNNNGG	3 cut(s)	237, 269, 799
AflII	CTTAAG	2 cut(s)	701, 1007
AgsI	TTSAA	3 cut(s)	784, 961, 1001
AhlI	ACTAGT	1 cut(s)	104
AjnI	CCWGG	4 cut(s)	137, 236, 787, 797
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
Alw21I	GWGCWC	2 cut(s)	585, 639
Alw26I	GTCTC	1 cut(s)	690
Ama87I	CYCGRG	2 cut(s)	146, 707
AoxI	GGCC	9 cut(s)	387, 496, 607, 790, 943, 985, 1132, 1137, 1147
ApeKI	GCWGC	4 cut(s)	62, 130, 133, 629
ApoI	RAATTY	4 cut(s)	712, 1025, 1053, 1123
Asp700I	GAANNNNTTC	1 cut(s)	41
AspS9I	GGNCC	4 cut(s)	20, 259, 1133, 1147
AsuC2I	CCSGG	1 cut(s)	1136
AsuHPI	GGTGA	1 cut(s)	590
AvaI	CYCGRG	2 cut(s)	146, 707
AvaII	GGWCC	2 cut(s)	20, 259
BalI	TGGCCA	2 cut(s)	609, 987
BanII	GRGCYC	2 cut(s)	585, 639
Bbv12I	GWGCWC	2 cut(s)	585, 639
BbvI	GCAGC	4 cut(s)	49, 142, 145, 641
BccI	CCATC	2 cut(s)	806, 1070
BciT130I	CCWGG	4 cut(s)	139, 238, 789, 799
BcnI	CCSGG	1 cut(s)	1136
BcoDI	GTCTC	1 cut(s)	690
BcuI	ACTAGT	1 cut(s)	104
BfaI	CTAG	3 cut(s)	105, 264, 642
BfmI	CTRYAG	3 cut(s)	540, 648, 843
BfrI	CTTAAG	2 cut(s)	701, 1007
BisI	GCNGC	5 cut(s)	63, 131, 134, 245, 630
BlpI	GCTNAGC	1 cut(s)	633
BlsI	GCNGC	5 cut(s)	64, 132, 135, 246, 631
Bme1390I	CCNGG	5 cut(s)	139, 238, 789, 799, 1136
Bme18I	GGWCC	2 cut(s)	20, 259
BmeT110I	CYCGRG	2 cut(s)	146, 707
BmgT120I	GGNCC	4 cut(s)	20, 259, 1133, 1147
BmiI	GGNNCC	5 cut(s)	22, 144, 260, 261, 822
BmrFI	CCNGG	5 cut(s)	139, 238, 789, 799, 1136
BmsI	GCATC	6 cut(s)	493, 526, 700, 730, 1056, 1101
BoxI	GACNNNNGTC	1 cut(s)	650
BplI	GAGNNNNNCTC	4 cut(s)	567, 599, 1023, 1055
Bpu1102I	GCTNAGC	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	1025
BpuMI	CCSGG	1 cut(s)	1136
BsaI	GGTCTC	1 cut(s)	690
BsaJI	CCNNGG	6 cut(s)	137, 138, 236, 390, 797, 798
BsaWI	WCCGGW	1 cut(s)	160
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	3 cut(s)	237, 269, 799
Bse3DI	GCAATG	1 cut(s)	72
BseBI	CCWGG	4 cut(s)	139, 238, 789, 799
BseDI	CCNNGG	6 cut(s)	137, 138, 236, 390, 797, 798
BseGI	GGATG	3 cut(s)	463, 541, 745
BseLI	CCNNNNNNNGG	3 cut(s)	237, 269, 799
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	3 cut(s)	204, 624, 906
BseRI	GAGGAG	3 cut(s)	126, 478, 749
BseXI	GCAGC	4 cut(s)	49, 142, 145, 641
BseYI	CCCAGC	1 cut(s)	23
BsgI	GTGCAG	2 cut(s)	288, 591
BshFI	GGCC	9 cut(s)	389, 498, 609, 792, 945, 987, 1134, 1139, 1149
BsiHKAI	GWGCWC	2 cut(s)	585, 639
BsiHKCI	CYCGRG	2 cut(s)	146, 707
BsiSI	CCGG	2 cut(s)	161, 1136
BslFI	GGGAC	2 cut(s)	245, 360
BslI	CCNNNNNNNGG	3 cut(s)	237, 269, 799
BsmAI	GTCTC	1 cut(s)	690
BsmFI	GGGAC	2 cut(s)	245, 360
BsnI	GGCC	9 cut(s)	389, 498, 609, 792, 945, 987, 1134, 1139, 1149
Bso31I	GGTCTC	1 cut(s)	690
BsoBI	CYCGRG	2 cut(s)	146, 707
Bsp1286I	GDGCHC	2 cut(s)	585, 639
Bsp143I	GATC	1 cut(s)	1060
Bsp1720I	GCTNAGC	1 cut(s)	633
BspACI	CCGC	2 cut(s)	179, 245
BspANI	GGCC	9 cut(s)	389, 498, 609, 792, 945, 987, 1134, 1139, 1149
BspCNI	CTCAG	3 cut(s)	205, 625, 907
BspLI	GGNNCC	5 cut(s)	22, 144, 260, 261, 822
BspMAI	CTGCAG	1 cut(s)	847
BspTI	CTTAAG	2 cut(s)	701, 1007
BspTNI	GGTCTC	1 cut(s)	690
BsrDI	GCAATG	1 cut(s)	72
BssECI	CCNNGG	6 cut(s)	137, 138, 236, 390, 797, 798
BssMI	GATC	1 cut(s)	1060
Bst2UI	CCWGG	4 cut(s)	139, 238, 789, 799
Bst4CI	ACNGT	1 cut(s)	121
Bst6I	CTCTTC	3 cut(s)	102, 162, 248
BstAFI	CTTAAG	2 cut(s)	701, 1007
BstC8I	GCNNGC	6 cut(s)	409, 496, 670, 943, 1071, 1151
BstDEI	CTNAG	5 cut(s)	213, 633, 851, 902, 915
BstDSI	CCRYGG	1 cut(s)	390
BstENI	CCTNNNNNAGG	1 cut(s)	267
BstF5I	GGATG	3 cut(s)	463, 541, 745
BstKTI	GATC	1 cut(s)	1063
BstMAI	GTCTC	1 cut(s)	690
BstMBI	GATC	1 cut(s)	1060
BstNI	CCWGG	4 cut(s)	139, 238, 789, 799
BstPAI	GACNNNNGTC	1 cut(s)	650
BstSCI	CCNGG	5 cut(s)	137, 236, 787, 797, 1134
BstSFI	CTRYAG	3 cut(s)	540, 648, 843
BstV1I	GCAGC	4 cut(s)	49, 142, 145, 641
BsuRI	GGCC	9 cut(s)	389, 498, 609, 792, 945, 987, 1134, 1139, 1149
BtgI	CCRYGG	1 cut(s)	390
BtsCI	GGATG	3 cut(s)	463, 541, 745
BtsI	GCAGTG	1 cut(s)	988
BtsIMutI	CAGTG	3 cut(s)	294, 972, 988
Cac8I	GCNNGC	6 cut(s)	409, 496, 670, 943, 1071, 1151
Cfr13I	GGNCC	4 cut(s)	20, 259, 1133, 1147
CseI	GACGC	1 cut(s)	1089
Csp6I	GTAC	1 cut(s)	164
CviAII	CATG	1 cut(s)	551
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	5 cut(s)	213, 633, 851, 902, 915
DpnI	GATC	1 cut(s)	1062
DpnII	GATC	1 cut(s)	1060
EaeI	YGGCCR	3 cut(s)	607, 985, 1137
Eam1104I	CTCTTC	3 cut(s)	102, 162, 248
EarI	CTCTTC	3 cut(s)	102, 162, 248
Ecl136II	GAGCTC	2 cut(s)	583, 637
Eco24I	GRGCYC	2 cut(s)	585, 639
Eco31I	GGTCTC	1 cut(s)	690
Eco47I	GGWCC	2 cut(s)	20, 259
Eco53kI	GAGCTC	2 cut(s)	583, 637
Eco57I	CTGAAG	4 cut(s)	908, 948, 1147, 1159
Eco88I	CYCGRG	2 cut(s)	146, 707
EcoICRI	GAGCTC	2 cut(s)	583, 637
EcoNI	CCTNNNNNAGG	1 cut(s)	267
EcoO109I	RGGNCCY	2 cut(s)	259, 1147
EcoRII	CCWGG	4 cut(s)	137, 236, 787, 797
EcoT22I	ATGCAT	2 cut(s)	486, 693
EcoT38I	GRGCYC	2 cut(s)	585, 639
FaeI	CATG	1 cut(s)	554
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FaqI	GGGAC	2 cut(s)	245, 360
FatI	CATG	1 cut(s)	550
FauI	CCCGC	1 cut(s)	186
Fnu4HI	GCNGC	5 cut(s)	63, 131, 134, 245, 630
FokI	GGATG	3 cut(s)	470, 548, 752
FriOI	GRGCYC	2 cut(s)	585, 639
Fsp4HI	GCNGC	5 cut(s)	63, 131, 134, 245, 630
FspBI	CTAG	3 cut(s)	105, 264, 642
GluI	GCNGC	5 cut(s)	63, 131, 134, 245, 630
GsaI	CCCAGC	1 cut(s)	27
HaeIII	GGCC	9 cut(s)	389, 498, 609, 792, 945, 987, 1134, 1139, 1149
HapII	CCGG	2 cut(s)	161, 1136
HgaI	GACGC	1 cut(s)	1089
Hin1II	CATG	1 cut(s)	554
HindIII	AAGCTT	1 cut(s)	666
HinfI	GANTC	5 cut(s)	92, 149, 472, 839, 1046
HpaII	CCGG	2 cut(s)	161, 1136
HphI	GGTGA	1 cut(s)	590
Hpy188I	TCNGA	6 cut(s)	477, 656, 928, 1051, 1065, 1178
Hpy188III	TCNNGA	6 cut(s)	695, 731, 781, 824, 836, 961
HpyAV	CCTTC	2 cut(s)	379, 1138
HpyCH4III	ACNGT	1 cut(s)	121
HpyF3I	CTNAG	5 cut(s)	213, 633, 851, 902, 915
Hsp92II	CATG	1 cut(s)	554
KflI	GGGWCCC	1 cut(s)	259
Kzo9I	GATC	1 cut(s)	1060
LmnI	GCTCC	2 cut(s)	826, 1031
Lsp1109I	GCAGC	4 cut(s)	49, 142, 145, 641
LweI	GCATC	6 cut(s)	493, 526, 700, 730, 1056, 1101
MaeI	CTAG	3 cut(s)	105, 264, 642
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	1 cut(s)	1062
MboI	GATC	1 cut(s)	1060
MboII	GAAGA	8 cut(s)	37, 89, 149, 265, 901, 941, 944, 1013
MhlI	GDGCHC	2 cut(s)	585, 639
MlsI	TGGCCA	2 cut(s)	609, 987
MluCI	AATT	7 cut(s)	341, 563, 712, 866, 1025, 1053, 1123
MluNI	TGGCCA	2 cut(s)	609, 987
MlyI	GAGTC	3 cut(s)	86, 158, 1055
MmeI	TCCRAC	1 cut(s)	634
Mox20I	TGGCCA	2 cut(s)	609, 987
Mph1103I	ATGCAT	2 cut(s)	486, 693
MroXI	GAANNNNTTC	1 cut(s)	41
MscI	TGGCCA	2 cut(s)	609, 987
MseI	TTAA	5 cut(s)	702, 750, 860, 1008, 1170
MslI	CAYNNNNRTG	2 cut(s)	105, 504
Msp20I	TGGCCA	2 cut(s)	609, 987
MspA1I	CMGCKG	1 cut(s)	632
MspCI	CTTAAG	2 cut(s)	701, 1007
MspI	CCGG	2 cut(s)	161, 1136
MspR9I	CCNGG	5 cut(s)	139, 238, 789, 799, 1136
MvaI	CCWGG	4 cut(s)	139, 238, 789, 799
NciI	CCSGG	1 cut(s)	1136
NdeII	GATC	1 cut(s)	1060
NlaIII	CATG	1 cut(s)	554
NlaIV	GGNNCC	5 cut(s)	22, 144, 260, 261, 822
NsiI	ATGCAT	2 cut(s)	486, 693
PasI	CCCWGGG	2 cut(s)	138, 798
PdmI	GAANNNNTTC	1 cut(s)	41
PfeI	GAWTC	2 cut(s)	472, 839
PkrI	GCNGC	5 cut(s)	64, 132, 135, 246, 631
PleI	GAGTC	3 cut(s)	86, 157, 1054
PpsI	GAGTC	3 cut(s)	86, 157, 1054
PpuMI	RGGWCCY	1 cut(s)	259
PshAI	GACNNNNGTC	1 cut(s)	650
Psp124BI	GAGCTC	2 cut(s)	585, 639
Psp5II	RGGWCCY	1 cut(s)	259
Psp6I	CCWGG	4 cut(s)	137, 236, 787, 797
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	4 cut(s)	137, 236, 787, 797
PspN4I	GGNNCC	5 cut(s)	22, 144, 260, 261, 822
PspPI	GGNCC	4 cut(s)	20, 259, 1133, 1147
PspPPI	RGGWCCY	1 cut(s)	259
PstI	CTGCAG	1 cut(s)	847
PvuII	CAGCTG	1 cut(s)	632
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
RseI	CAYNNNNRTG	2 cut(s)	105, 504
SacI	GAGCTC	2 cut(s)	585, 639
SaqAI	TTAA	5 cut(s)	702, 750, 860, 1008, 1170
SatI	GCNGC	5 cut(s)	63, 131, 134, 245, 630
Sau3AI	GATC	1 cut(s)	1060
Sau96I	GGNCC	4 cut(s)	20, 259, 1133, 1147
SchI	GAGTC	3 cut(s)	86, 158, 1055
ScrFI	CCNGG	5 cut(s)	139, 238, 789, 799, 1136
SduI	GDGCHC	2 cut(s)	585, 639
SfaNI	GCATC	6 cut(s)	493, 526, 700, 730, 1056, 1101
SfcI	CTRYAG	3 cut(s)	540, 648, 843
SinI	GGWCC	2 cut(s)	20, 259
SmiMI	CAYNNNNRTG	2 cut(s)	105, 504
SmlI	CTYRAG	3 cut(s)	701, 1007, 1040
SmoI	CTYRAG	3 cut(s)	701, 1007, 1040
SpeI	ACTAGT	1 cut(s)	104
Sse9I	AATT	7 cut(s)	341, 563, 712, 866, 1025, 1053, 1123
SsiI	CCGC	2 cut(s)	179, 245
SspMI	CTAG	3 cut(s)	105, 264, 642
SstI	GAGCTC	2 cut(s)	585, 639
StyD4I	CCNGG	5 cut(s)	137, 236, 787, 797, 1134
TaaI	ACNGT	1 cut(s)	121
TaqI	TCGA	2 cut(s)	416, 694
TasI	AATT	7 cut(s)	341, 563, 712, 866, 1025, 1053, 1123
TauI	GCSGC	1 cut(s)	247
TfiI	GAWTC	2 cut(s)	472, 839
Tru1I	TTAA	5 cut(s)	702, 750, 860, 1008, 1170
Tru9I	TTAA	5 cut(s)	702, 750, 860, 1008, 1170
TscAI	CASTG	3 cut(s)	294, 979, 988
TseI	GCWGC	4 cut(s)	62, 130, 133, 629
TspDTI	ATGAA	5 cut(s)	89, 266, 539, 666, 893
TspRI	CASTG	3 cut(s)	294, 979, 988
Vha464I	CTTAAG	2 cut(s)	701, 1007
VpaK11BI	GGWCC	2 cut(s)	20, 259
XagI	CCTNNNNNAGG	1 cut(s)	267
XapI	RAATTY	4 cut(s)	712, 1025, 1053, 1123
XcmI	CCANNNNNNNNNTGG	1 cut(s)	795
XmnI	GAANNNNTTC	1 cut(s)	41
XspI	CTAG	3 cut(s)	105, 264, 642
Zsp2I	ATGCAT	2 cut(s)	486, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.