Rmu_co8363955.1_g000001

Endoplasmic reticulum-Golgi intermediate compartment protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8363955.1
Physical Location & Seq
Reverse (-)
2 .. 1034
1033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8363955.1_g000001.1.cds

Sequence Viewer

Length: 401 bp
atgactcgttttccacttttgatcacagtcctgagtgtggatgcaattgatatgtcgggcaagcatgaagtggatcttgacacaaatatatggaaacttcgccttaacagtcatggacacatcatcggcactgaatatttgtctgaccttgtggagaaggaacattctaacaaccatgatgatggtaaagagcatcaccaggaaaaccatttacatggagcttttgatctagctgcagaagaactgatcaagaaagtaaagaaagcattagatgatggagaaggatgcagggtttatggtgttttagatgtccaaagggttgctggaaactttcatatatcagttcatgggttaaacattttcgttgcacaaatggttggttttccttggatcttcgtact
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

134

Amino Acids

15.12

Weight (kDa)

5.69

Isoelectric Point (pI)

19.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025501)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8363955.1_g000001 Rmu_sc0001004.1_g000004
rosa_samantha Rh2DG531300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 81, 398
AfaI GTAC 1 cut(s) 399
AfiI CCNNNNNNNGG 1 cut(s) 37
AjnI CCWGG 1 cut(s) 198
AluBI AGCT 2 cut(s) 221, 233
AluI AGCT 2 cut(s) 221, 233
AlwI GGATC 2 cut(s) 81, 398
ApeKI GCWGC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 188
BbvI GCAGC 1 cut(s) 220
BccI CCATC 2 cut(s) 176, 269
BciT130I CCWGG 1 cut(s) 200
BclI TGATCA 2 cut(s) 21, 246
BfaI CTAG 1 cut(s) 230
BfmI CTRYAG 1 cut(s) 234
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 200
BmsI GCATC 3 cut(s) 31, 202, 275
BsaJI CCNNGG 1 cut(s) 386
Bsc4I CCNNNNNNNGG 1 cut(s) 37
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 386
BseGI GGATG 2 cut(s) 46, 290
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMII CTCAG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 220
BslI CCNNNNNNNGG 1 cut(s) 37
Bsp143I GATC 5 cut(s) 21, 73, 226, 246, 390
BspCNI CTCAG 1 cut(s) 24
BspMAI CTGCAG 1 cut(s) 238
BspPI GGATC 2 cut(s) 81, 398
BssECI CCNNGG 1 cut(s) 386
BssMI GATC 5 cut(s) 21, 73, 226, 246, 390
BssT1I CCWWGG 1 cut(s) 386
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 2 cut(s) 28, 110
BstC8I GCNNGC 1 cut(s) 62
BstDEI CTNAG 1 cut(s) 32
BstF5I GGATG 2 cut(s) 46, 290
BstKTI GATC 5 cut(s) 24, 76, 229, 249, 393
BstMBI GATC 5 cut(s) 21, 73, 226, 246, 390
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 198
BstSFI CTRYAG 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 220
BstX2I RGATCY 2 cut(s) 73, 390
BstXI CCANNNNNNTGG 2 cut(s) 182, 215
BstYI RGATCY 2 cut(s) 73, 390
BtsCI GGATG 2 cut(s) 46, 290
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 62
Csp6I GTAC 1 cut(s) 398
CviAII CATG 5 cut(s) 65, 113, 176, 215, 347
CviJI RGCY 2 cut(s) 221, 233
CviKI_1 RGCY 2 cut(s) 221, 233
CviQI GTAC 1 cut(s) 398
DdeI CTNAG 1 cut(s) 32
DpnI GATC 5 cut(s) 23, 75, 228, 248, 392
DpnII GATC 5 cut(s) 21, 73, 226, 246, 390
Eco130I CCWWGG 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 386
ErhI CCWWGG 1 cut(s) 386
FaeI CATG 5 cut(s) 68, 116, 179, 218, 350
FalI AAGNNNNNCTT 2 cut(s) 60, 92
FatI CATG 5 cut(s) 64, 112, 175, 214, 346
FbaI TGATCA 2 cut(s) 21, 246
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 2 cut(s) 53, 297
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 1 cut(s) 230
GluI GCNGC 1 cut(s) 234
Hin1II CATG 5 cut(s) 68, 116, 179, 218, 350
HinfI GANTC 1 cut(s) 4
HphI GGTGA 1 cut(s) 188
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 3 cut(s) 31, 77, 250
HpyAV CCTTC 2 cut(s) 151, 275
HpyCH4III ACNGT 2 cut(s) 28, 110
HpyCH4V TGCA 4 cut(s) 44, 236, 288, 368
HpyF3I CTNAG 1 cut(s) 32
Hsp92II CATG 5 cut(s) 68, 116, 179, 218, 350
Ksp22I TGATCA 2 cut(s) 21, 246
Kzo9I GATC 5 cut(s) 21, 73, 226, 246, 390
LmnI GCTCC 1 cut(s) 218
LpnPI CCDG 5 cut(s) 44, 185, 212, 274, 309
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 3 cut(s) 31, 202, 275
MaeI CTAG 1 cut(s) 230
MalI GATC 5 cut(s) 23, 75, 228, 248, 392
MboI GATC 5 cut(s) 21, 73, 226, 246, 390
MboII GAAGA 2 cut(s) 251, 385
MfeI CAATTG 1 cut(s) 45
MflI RGATCY 2 cut(s) 73, 390
MluCI AATT 1 cut(s) 45
MseI TTAA 2 cut(s) 105, 353
MslI CAYNNNNRTG 2 cut(s) 180, 213
MspR9I CCNGG 1 cut(s) 200
MunI CAATTG 1 cut(s) 45
MvaI CCWGG 1 cut(s) 200
NdeII GATC 5 cut(s) 21, 73, 226, 246, 390
NlaIII CATG 5 cut(s) 68, 116, 179, 218, 350
PkrI GCNGC 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PstI CTGCAG 1 cut(s) 238
PsuI RGATCY 2 cut(s) 73, 390
RsaI GTAC 1 cut(s) 399
RsaNI GTAC 1 cut(s) 398
RseI CAYNNNNRTG 2 cut(s) 180, 213
SaqAI TTAA 2 cut(s) 105, 353
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 5 cut(s) 21, 73, 226, 246, 390
ScrFI CCNGG 1 cut(s) 200
SetI ASST 3 cut(s) 150, 223, 235
SfaNI GCATC 3 cut(s) 31, 202, 275
SfcI CTRYAG 1 cut(s) 234
SmiMI CAYNNNNRTG 2 cut(s) 180, 213
Sse9I AATT 1 cut(s) 45
SspI AATATT 1 cut(s) 137
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 386
TaaI ACNGT 2 cut(s) 28, 110
TasI AATT 1 cut(s) 45
Tru1I TTAA 2 cut(s) 105, 353
Tru9I TTAA 2 cut(s) 105, 353
TscAI CASTG 1 cut(s) 136
TseI GCWGC 1 cut(s) 233
TspDTI ATGAA 3 cut(s) 81, 323, 335
TspRI CASTG 1 cut(s) 136
XcmI CCANNNNNNNNNTGG 1 cut(s) 320
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.