Rmu_sc0001004.1_g000004

Endoplasmic reticulum-Golgi intermediate compartment protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001004.1
OG0025501
Physical Location & Seq
Reverse (-)
9523 .. 11603
2081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001004.1_g000004.1.cds

Sequence Viewer

Length: 747 bp
atggggatgaaacaagccttgaagagcttggatgcgtttcctcgagccgaggagcatttgttgcagaagactcaatctggggcttttgtttctgttgttggtctgctcataatggcgacgttgtttttgcacgagctgagatattatctttcatcgtatactgttcatcagatgtctgtggacttgaagcgcggtgagactcttccaattcacataaacatgacgtttccggctctaccttgtgaagtcctgagtgtggatgcaattgatatgtcgggcaagcatgaagtggatcttgacacaaatatatggaaacttcgccttaacagtcatggacacatcatcggcactgaatatttgtctgaccttgtggagaaggaacattctaacaaccatgatgatggtaaagagcatcaccaggaaaaccatttacatggagcttttgatctagctgcagaagaactgatcaagaaagtaaagaaagcattagatgatggagaaggatgcagggtttatggtgttttagatgtccaaagggttgctggaaactttcatatatcagttcatgggttaaacattttcgttgcacaaatgatttttgaaggatctaaaaatgtaaatgtaagtcacattattcatgacttgtcatttggcccaaaatatccagggattcacaacccgcttgacggaactgagcgcattttgcatggcaccagtggcacattcaaatattatataaaggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPIIcoated_ERV ERGIC_N

Protein Analysis

248

Amino Acids

27.81

Weight (kDa)

6.15

Isoelectric Point (pI)

30.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025501)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8363955.1_g000001 Rmu_sc0001004.1_g000004
rosa_samantha Rh2DG531300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 710
AccI GTMKAC 1 cut(s) 158
AccII CGCG 1 cut(s) 192
AciI CCGC 2 cut(s) 192, 680
AclWI GGATC 2 cut(s) 300, 613
AfiI CCNNNNNNNGG 2 cut(s) 256, 686
AgsI TTSAA 4 cut(s) 22, 187, 602, 727
AjnI CCWGG 2 cut(s) 417, 664
AluBI AGCT 4 cut(s) 27, 136, 440, 452
AluI AGCT 4 cut(s) 27, 136, 440, 452
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 2 cut(s) 300, 613
Ama87I CYCGRG 1 cut(s) 42
AoxI GGCC 1 cut(s) 652
ApeKI GCWGC 1 cut(s) 452
ArsI GACNNNNNNTTYG 4 cut(s) 109, 141, 632, 664
AspLEI GCGC 2 cut(s) 192, 699
AspS9I GGNCC 1 cut(s) 653
AsuHPI GGTGA 2 cut(s) 206, 407
AvaI CYCGRG 1 cut(s) 42
BanI GGYRCC 1 cut(s) 710
BauI CACGAG 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 439
BccI CCATC 2 cut(s) 395, 488
BciT130I CCWGG 2 cut(s) 419, 666
BclI TGATCA 1 cut(s) 465
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 1 cut(s) 449
BfmI CTRYAG 1 cut(s) 453
BisI GCNGC 1 cut(s) 453
BlsI GCNGC 1 cut(s) 454
Bme1390I CCNGG 2 cut(s) 419, 666
BmeT110I CYCGRG 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 653
BmiI GGNNCC 1 cut(s) 712
BmrFI CCNGG 2 cut(s) 419, 666
BmsI GCATC 4 cut(s) 22, 250, 421, 494
BpiI GAAGAC 1 cut(s) 74
BsaJI CCNNGG 2 cut(s) 48, 665
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 686
Bse1I ACTGG 1 cut(s) 714
BseBI CCWGG 2 cut(s) 419, 666
BseDI CCNNGG 2 cut(s) 48, 665
BseGI GGATG 4 cut(s) 12, 37, 265, 509
BseLI CCNNNNNNNGG 2 cut(s) 256, 686
BseMII CTCAG 3 cut(s) 128, 242, 684
BseNI ACTGG 1 cut(s) 714
BseRI GAGGAG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 439
Bsh1236I CGCG 1 cut(s) 192
BshFI GGCC 1 cut(s) 654
BshNI GGYRCC 1 cut(s) 710
BsiHKCI CYCGRG 1 cut(s) 42
BsiSI CCGG 1 cut(s) 230
BslI CCNNNNNNNGG 2 cut(s) 256, 686
BsmAI GTCTC 1 cut(s) 191
BsnI GGCC 1 cut(s) 654
BsoBI CYCGRG 1 cut(s) 42
Bsp143I GATC 4 cut(s) 292, 445, 465, 605
BspACI CCGC 2 cut(s) 192, 680
BspANI GGCC 1 cut(s) 654
BspCNI CTCAG 3 cut(s) 129, 243, 685
BspFNI CGCG 1 cut(s) 192
BspHI TCATGA 1 cut(s) 637
BspLI GGNNCC 1 cut(s) 712
BspMAI CTGCAG 1 cut(s) 457
BspPI GGATC 2 cut(s) 300, 613
BspQI GCTCTTC 1 cut(s) 17
BspT107I GGYRCC 1 cut(s) 710
BsrI ACTGG 1 cut(s) 714
BssECI CCNNGG 2 cut(s) 48, 665
BssMI GATC 4 cut(s) 292, 445, 465, 605
BssNAI GTATAC 1 cut(s) 159
BssSI CACGAG 1 cut(s) 131
Bst1107I GTATAC 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 131
Bst2UI CCWGG 2 cut(s) 419, 666
Bst4CI ACNGT 2 cut(s) 163, 329
Bst6I CTCTTC 2 cut(s) 17, 207
BstAPI GCANNNNNTGC 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 281
BstDEI CTNAG 3 cut(s) 137, 251, 693
BstF5I GGATG 4 cut(s) 12, 37, 265, 509
BstFNI CGCG 1 cut(s) 192
BstHHI GCGC 2 cut(s) 192, 699
BstKTI GATC 4 cut(s) 295, 448, 468, 608
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 4 cut(s) 292, 445, 465, 605
BstMWI GCNNNNNNNGC 3 cut(s) 61, 703, 717
BstNI CCWGG 2 cut(s) 419, 666
BstSCI CCNGG 2 cut(s) 417, 664
BstSFI CTRYAG 1 cut(s) 453
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 439
BstV2I GAAGAC 1 cut(s) 74
BstX2I RGATCY 2 cut(s) 292, 605
BstXI CCANNNNNNTGG 2 cut(s) 401, 434
BstYI RGATCY 2 cut(s) 292, 605
BstZ17I GTATAC 1 cut(s) 159
BsuRI GGCC 1 cut(s) 654
BtsCI GGATG 4 cut(s) 12, 37, 265, 509
BtsIMutI CAGTG 2 cut(s) 348, 721
Cac8I GCNNGC 1 cut(s) 281
CciI TCATGA 1 cut(s) 637
CfoI GCGC 2 cut(s) 192, 699
Cfr13I GGNCC 1 cut(s) 653
CviAII CATG 8 cut(s) 220, 284, 332, 395, 434, 566, 638, 707
CviJI RGCY 9 cut(s) 17, 27, 47, 83, 136, 233, 440, 452, 654
CviKI_1 RGCY 9 cut(s) 17, 27, 47, 83, 136, 233, 440, 452, 654
DdeI CTNAG 3 cut(s) 137, 251, 693
DpnI GATC 4 cut(s) 294, 447, 467, 607
DpnII GATC 4 cut(s) 292, 445, 465, 605
Eam1104I CTCTTC 2 cut(s) 17, 207
EarI CTCTTC 2 cut(s) 17, 207
Eco88I CYCGRG 1 cut(s) 42
EcoRII CCWGG 2 cut(s) 417, 664
FaeI CATG 8 cut(s) 223, 287, 335, 398, 437, 569, 641, 710
FalI AAGNNNNNCTT 2 cut(s) 279, 311
FatI CATG 8 cut(s) 219, 283, 331, 394, 433, 565, 637, 706
FauI CCCGC 1 cut(s) 687
FbaI TGATCA 1 cut(s) 465
FblI GTMKAC 1 cut(s) 158
Fnu4HI GCNGC 1 cut(s) 453
FokI GGATG 4 cut(s) 19, 44, 272, 516
Fsp4HI GCNGC 1 cut(s) 453
FspBI CTAG 1 cut(s) 449
GlaI GCGC 2 cut(s) 191, 698
GluI GCNGC 1 cut(s) 453
HaeIII GGCC 1 cut(s) 654
HapII CCGG 1 cut(s) 230
HhaI GCGC 2 cut(s) 192, 699
Hin1II CATG 8 cut(s) 223, 287, 335, 398, 437, 569, 641, 710
Hin6I GCGC 2 cut(s) 190, 697
HinP1I GCGC 2 cut(s) 190, 697
HinfI GANTC 3 cut(s) 70, 199, 670
HpaII CCGG 1 cut(s) 230
HphI GGTGA 2 cut(s) 206, 407
Hpy166II GTNNAC 2 cut(s) 159, 181
Hpy188I TCNGA 2 cut(s) 171, 364
Hpy188III TCNNGA 4 cut(s) 250, 296, 469, 638
Hpy8I GTNNAC 2 cut(s) 159, 181
Hpy99I CGWCG 1 cut(s) 121
HpyAV CCTTC 3 cut(s) 370, 494, 596
HpyCH4III ACNGT 2 cut(s) 163, 329
HpyCH4IV ACGT 2 cut(s) 119, 224
HpyCH4V TGCA 7 cut(s) 64, 130, 263, 455, 507, 587, 706
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 703, 717
HpyF3I CTNAG 3 cut(s) 137, 251, 693
HpySE526I ACGT 2 cut(s) 119, 224
Hsp92II CATG 8 cut(s) 223, 287, 335, 398, 437, 569, 641, 710
HspAI GCGC 2 cut(s) 190, 697
Ksp22I TGATCA 1 cut(s) 465
Kzo9I GATC 4 cut(s) 292, 445, 465, 605
LguI GCTCTTC 1 cut(s) 17
LmnI GCTCC 2 cut(s) 52, 437
Lsp1109I GCAGC 1 cut(s) 439
LweI GCATC 4 cut(s) 22, 250, 421, 494
MaeI CTAG 1 cut(s) 449
MaeII ACGT 2 cut(s) 119, 224
MaeIII GTNAC 1 cut(s) 626
MalI GATC 4 cut(s) 294, 447, 467, 607
MboI GATC 4 cut(s) 292, 445, 465, 605
MboII GAAGA 4 cut(s) 34, 79, 194, 470
MfeI CAATTG 1 cut(s) 264
MflI RGATCY 2 cut(s) 292, 605
MluCI AATT 2 cut(s) 207, 264
MlyI GAGTC 2 cut(s) 64, 193
MnlI CCTC 2 cut(s) 43, 51
MseI TTAA 2 cut(s) 324, 572
MslI CAYNNNNRTG 3 cut(s) 218, 399, 432
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 2 cut(s) 419, 666
MunI CAATTG 1 cut(s) 264
MvaI CCWGG 2 cut(s) 419, 666
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 3 cut(s) 61, 703, 717
NdeII GATC 4 cut(s) 292, 445, 465, 605
NlaIII CATG 8 cut(s) 223, 287, 335, 398, 437, 569, 641, 710
NlaIV GGNNCC 1 cut(s) 712
NmeAIII GCCGAG 1 cut(s) 73
NmuCI GTSAC 1 cut(s) 626
PaeR7I CTCGAG 1 cut(s) 42
PagI TCATGA 1 cut(s) 637
PciSI GCTCTTC 1 cut(s) 17
PfeI GAWTC 1 cut(s) 670
PkrI GCNGC 1 cut(s) 454
PleI GAGTC 2 cut(s) 64, 193
PpsI GAGTC 2 cut(s) 64, 193
Psp6I CCWGG 2 cut(s) 417, 664
PspGI CCWGG 2 cut(s) 417, 664
PspN4I GGNNCC 1 cut(s) 712
PspPI GGNCC 1 cut(s) 653
PspXI VCTCGAGB 1 cut(s) 42
PstI CTGCAG 1 cut(s) 457
PsuI RGATCY 2 cut(s) 292, 605
RseI CAYNNNNRTG 3 cut(s) 218, 399, 432
SapI GCTCTTC 1 cut(s) 17
SaqAI TTAA 2 cut(s) 324, 572
SatI GCNGC 1 cut(s) 453
Sau3AI GATC 4 cut(s) 292, 445, 465, 605
Sau96I GGNCC 1 cut(s) 653
SchI GAGTC 2 cut(s) 64, 193
ScrFI CCNGG 2 cut(s) 419, 666
SetI ASST 9 cut(s) 29, 122, 138, 227, 241, 369, 442, 454, 744
SfaNI GCATC 4 cut(s) 22, 250, 421, 494
SfcI CTRYAG 1 cut(s) 453
Sfr274I CTCGAG 1 cut(s) 42
SlaI CTCGAG 1 cut(s) 42
SmiMI CAYNNNNRTG 3 cut(s) 218, 399, 432
SmlI CTYRAG 1 cut(s) 42
SmoI CTYRAG 1 cut(s) 42
Sse9I AATT 2 cut(s) 207, 264
SsiI CCGC 2 cut(s) 192, 680
SspI AATATT 2 cut(s) 356, 731
SspMI CTAG 1 cut(s) 449
StyD4I CCNGG 2 cut(s) 417, 664
TaaI ACNGT 2 cut(s) 163, 329
TaiI ACGT 2 cut(s) 122, 227
TaqI TCGA 1 cut(s) 43
TasI AATT 2 cut(s) 207, 264
TfiI GAWTC 1 cut(s) 670
Tru1I TTAA 2 cut(s) 324, 572
Tru9I TTAA 2 cut(s) 324, 572
TscAI CASTG 2 cut(s) 355, 721
TseFI GTSAC 1 cut(s) 626
TseI GCWGC 1 cut(s) 452
Tsp45I GTSAC 1 cut(s) 626
TspDTI ATGAA 7 cut(s) 23, 141, 155, 300, 542, 554, 626
TspGWI ACGGA 1 cut(s) 702
TspRI CASTG 2 cut(s) 355, 721
XcmI CCANNNNNNNNNTGG 1 cut(s) 539
XhoI CTCGAG 1 cut(s) 42
XmiI GTMKAC 1 cut(s) 158
XspI CTAG 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.